Wall clock time and date at job start Mon Mar 30 2020 03:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86798 * 119.99466 * 2 1 4 4 H 1.48497 * 109.47673 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47084 * 239.99736 * 3 2 1 6 6 H 1.48510 * 109.46991 * 120.00000 * 3 2 1 7 7 C 1.40045 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00222 * 4.67054 * 7 2 1 9 9 C 1.46373 * 119.99626 * 184.67774 * 7 2 1 10 10 O 1.21687 * 120.00293 * 6.23890 * 9 7 2 11 11 N 1.34780 * 119.99746 * 186.24684 * 9 7 2 12 12 C 1.46505 * 119.99680 * 179.97438 * 11 9 7 13 13 H 1.08998 * 110.42628 * 36.06677 * 12 11 9 14 14 C 1.54540 * 110.47474 * 158.72205 * 12 11 9 15 15 C 1.54361 * 101.77980 * 143.83567 * 14 12 11 16 16 N 1.47010 * 105.54289 * 334.33051 * 15 14 12 17 17 C 1.37196 * 141.59712 * 196.97617 * 16 15 14 18 18 C 1.34561 * 106.83747 * 180.20987 * 17 16 15 19 19 N 1.34010 * 108.02926 * 359.97278 * 18 17 16 20 20 C 1.30904 * 109.30051 * 359.89390 * 19 18 17 21 21 H 0.97000 * 120.00092 * 174.89925 * 1 2 3 22 22 H 0.97002 * 119.99928 * 359.97438 * 11 9 7 23 23 H 1.09001 * 110.97019 * 261.98388 * 14 12 11 24 24 H 1.09005 * 110.96651 * 25.74136 * 14 12 11 25 25 H 1.09000 * 110.27124 * 215.29352 * 15 14 12 26 26 H 1.09002 * 110.26391 * 93.36893 * 15 14 12 27 27 H 1.07999 * 126.58192 * 0.18780 * 17 16 15 28 28 H 1.08000 * 125.98757 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 1.2756 2.7465 0.0006 5 1 3.0944 1.6965 -1.2125 6 1 3.0944 1.6965 1.2126 7 6 2.0070 -1.2128 -0.0005 8 1 1.4697 -2.1465 -0.0771 9 6 3.4671 -1.2149 0.1028 10 8 4.0644 -0.1738 0.3031 11 7 4.1499 -2.3700 -0.0240 12 6 5.6114 -2.3719 0.0789 13 1 5.9414 -1.6460 0.8220 14 6 6.1264 -3.7851 0.4338 15 6 7.4394 -3.8543 -0.3748 16 7 7.2598 -2.9232 -1.4982 17 6 7.7812 -2.6082 -2.7274 18 6 7.0614 -1.5757 -3.2032 19 7 6.1268 -1.2676 -2.2936 20 6 6.2382 -2.0741 -1.2685 21 1 -0.4850 -0.8367 -0.0747 22 1 3.6738 -3.1999 -0.1834 23 1 6.3211 -3.8723 1.5028 24 1 5.4243 -4.5506 0.1030 25 1 7.6015 -4.8662 -0.7461 26 1 8.2806 -3.5410 0.2437 27 1 8.6106 -3.0952 -3.2188 28 1 7.2107 -1.0817 -4.1520 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141290358.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:20 Heat of formation + Delta-G solvation = -3.224537 kcal Electronic energy + Delta-G solvation = -14826.007330 eV Core-core repulsion = 12262.692389 eV Total energy + Delta-G solvation = -2563.314941 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.35784 -39.89998 -37.48098 -35.13238 -34.66154 -31.74522 -29.51465 -28.75366 -26.85991 -23.13403 -22.30218 -21.91192 -20.70634 -20.11951 -17.98131 -17.50823 -17.12961 -16.16474 -15.77078 -15.53482 -15.27383 -14.78645 -14.62218 -14.45478 -14.14623 -13.80238 -13.24448 -13.00693 -12.55128 -12.36405 -12.14308 -11.35692 -11.19063 -10.76966 -10.53225 -10.11493 -9.89895 -9.34390 -9.17098 -7.13142 1.07642 1.44686 1.53469 1.84635 1.95874 2.16816 2.22847 2.42839 2.81072 3.10061 3.28318 3.59774 3.77564 3.96088 4.14936 4.40204 4.42916 4.58586 4.69781 4.86828 4.92897 5.35084 5.44003 5.52487 5.85052 5.90964 5.96201 6.19547 6.64160 7.12571 7.29708 8.02517 8.12668 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.040787 B = 0.008931 C = 0.008018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.320640 B = 3134.395345 C = 3491.506056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.033 3.967 3 Si 1.159 2.841 4 H -0.306 1.306 5 H -0.307 1.307 6 H -0.292 1.292 7 C -0.615 4.615 8 H 0.069 0.931 9 C 0.556 3.444 10 O -0.633 6.633 11 N -0.727 5.727 12 C 0.218 3.782 13 H 0.087 0.913 14 C -0.118 4.118 15 C 0.105 3.895 16 N -0.479 5.479 17 C -0.021 4.021 18 C -0.065 4.065 19 N -0.533 5.533 20 C 0.152 3.848 21 H 0.278 0.722 22 H 0.402 0.598 23 H 0.138 0.862 24 H 0.104 0.896 25 H 0.127 0.873 26 H 0.115 0.885 27 H 0.218 0.782 28 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.344 -12.920 -0.619 20.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.478 5.478 2 C -0.182 4.182 3 Si 0.992 3.008 4 H -0.236 1.236 5 H -0.235 1.235 6 H -0.220 1.220 7 C -0.652 4.652 8 H 0.087 0.913 9 C 0.362 3.638 10 O -0.527 6.527 11 N -0.378 5.378 12 C 0.109 3.891 13 H 0.104 0.896 14 C -0.156 4.156 15 C -0.015 4.015 16 N -0.163 5.163 17 C -0.153 4.153 18 C -0.213 4.213 19 N -0.252 5.252 20 C -0.113 4.113 21 H 0.089 0.911 22 H 0.237 0.763 23 H 0.156 0.844 24 H 0.123 0.877 25 H 0.145 0.855 26 H 0.133 0.867 27 H 0.234 0.766 28 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 16.094 -10.272 -0.462 19.098 hybrid contribution 0.101 -2.428 -0.504 2.481 sum 16.195 -12.699 -0.965 20.603 Atomic orbital electron populations 1.70658 1.07673 1.32135 1.37344 1.27642 0.95707 1.06503 0.88300 0.81971 0.70624 0.70330 0.77919 1.23620 1.23534 1.21958 1.22211 0.91220 0.96154 1.55584 0.91264 1.18320 0.88376 0.82377 0.74751 1.90138 1.70982 1.32448 1.59144 1.45421 1.04833 1.10142 1.77383 1.20002 0.81193 0.99633 0.88244 0.89562 1.23105 0.95974 0.92671 1.03890 1.22736 0.99567 0.94410 0.84794 1.46835 1.26071 1.28029 1.15397 1.22908 1.04362 1.02021 0.86033 1.22857 0.96408 1.00724 1.01271 1.69858 1.25459 1.27059 1.02858 1.25156 0.94314 0.92535 0.99263 0.91104 0.76297 0.84376 0.87721 0.85530 0.86691 0.76555 0.79863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -50.80 13.64 21.84 0.30 -50.50 15 2 C 0.03 1.99 5.52 85.30 0.47 2.46 15 3 Si 1.16 65.17 25.99 68.60 1.78 66.95 15 4 H -0.31 -15.99 7.11 99.48 0.71 -15.28 15 5 H -0.31 -18.20 7.11 99.48 0.71 -17.50 15 6 H -0.29 -16.73 6.78 99.48 0.67 -16.05 15 7 C -0.61 -36.15 9.96 24.83 0.25 -35.90 15 8 H 0.07 3.96 8.05 -2.91 -0.02 3.93 15 9 C 0.56 30.71 7.56 86.36 0.65 31.37 15 10 O -0.63 -38.60 11.78 -4.31 -0.05 -38.65 15 11 N -0.73 -30.73 5.15 -446.55 -2.30 -33.03 15 12 C 0.22 7.54 3.22 45.05 0.15 7.69 15 13 H 0.09 3.33 7.66 -2.39 -0.02 3.31 15 14 C -0.12 -2.11 6.85 31.58 0.22 -1.90 15 15 C 0.10 1.55 7.78 86.74 0.67 2.23 15 16 N -0.48 -12.80 3.61 -509.19 -1.84 -14.64 15 17 C -0.02 -0.52 12.04 83.01 1.00 0.48 15 18 C -0.06 -2.20 11.86 83.52 0.99 -1.21 15 19 N -0.53 -24.24 11.26 -187.33 -2.11 -26.35 15 20 C 0.15 5.87 8.21 138.36 1.14 7.01 15 21 H 0.28 15.95 8.72 -92.71 -0.81 15.14 15 22 H 0.40 14.65 8.36 -92.71 -0.78 13.87 15 23 H 0.14 1.59 8.14 -2.39 -0.02 1.57 15 24 H 0.10 1.62 7.80 -2.38 -0.02 1.61 15 25 H 0.13 1.03 8.14 -2.39 -0.02 1.01 15 26 H 0.12 1.20 8.14 -2.39 -0.02 1.18 15 27 H 0.22 3.11 8.06 -2.91 -0.02 3.09 15 28 H 0.18 5.17 8.06 -2.91 -0.02 5.15 15 Total: -1.00 -84.63 246.58 1.65 -82.98 By element: Atomic # 1 Polarization: 0.69 SS G_CDS: 0.34 Total: 1.03 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 5.53 Total: 12.22 kcal Atomic # 7 Polarization: -118.57 SS G_CDS: -5.95 Total: -124.52 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -0.05 Total: -38.65 kcal Atomic # 14 Polarization: 65.17 SS G_CDS: 1.78 Total: 66.95 kcal Total: -84.63 1.65 -82.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141290358.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.752 kcal (2) G-P(sol) polarization free energy of solvation -84.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds