Wall clock time and date at job start Mon Mar 30 2020 03:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86796 * 119.99887 * 2 1 4 4 H 1.48502 * 109.47028 * 239.99399 * 3 2 1 5 5 H 1.48497 * 109.47531 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47039 * 120.00146 * 3 2 1 7 7 C 1.38945 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00271 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99860 * 0.02562 * 7 2 1 10 10 C 1.34777 * 119.99634 * 179.97438 * 9 7 2 11 11 O 1.21293 * 120.00456 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99675 * 179.72687 * 10 9 7 13 13 H 1.09000 * 115.55362 * 34.60723 * 12 10 9 14 14 C 1.53005 * 117.49752 * 248.90055 * 12 10 9 15 15 C 1.53000 * 59.99996 * 252.50802 * 14 12 10 16 16 H 1.09007 * 117.50109 * 107.48706 * 15 14 12 17 17 C 1.50700 * 117.51980 * 252.51729 * 15 14 12 18 18 C 1.34671 * 126.59009 * 33.65652 * 17 15 14 19 19 N 1.34125 * 108.01973 * 179.97438 * 18 17 15 20 20 C 1.30506 * 109.25623 * 359.97438 * 19 18 17 21 21 N 1.35042 * 108.69677 * 359.77068 * 20 19 18 22 22 H 0.97008 * 126.39134 * 180.27123 * 21 20 19 23 23 H 0.97004 * 119.99542 * 0.02562 * 1 2 3 24 24 H 0.97001 * 119.99881 * 0.02562 * 9 7 2 25 25 H 1.08994 * 117.50050 * 359.97438 * 14 12 10 26 26 H 1.09004 * 117.49949 * 145.02287 * 14 12 10 27 27 H 1.07994 * 125.98825 * 359.96026 * 18 17 15 28 28 H 1.08001 * 125.64814 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6963 -1.2124 5 1 1.2832 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5578 0.0005 11 8 3.2101 -3.5579 0.0010 12 6 1.2437 -4.8629 0.0068 13 1 0.3053 -4.8667 -0.5479 14 6 1.3188 -5.7160 1.2747 15 6 2.0657 -6.1533 0.0131 16 1 3.1516 -6.0583 0.0126 17 6 1.5161 -7.3322 -0.7480 18 6 0.2186 -7.6671 -0.8819 19 7 0.1519 -8.7771 -1.6318 20 6 1.3587 -9.1425 -1.9682 21 7 2.2394 -8.2646 -1.4416 22 1 3.2046 -8.2910 -1.5357 23 1 -0.4850 0.8401 -0.0004 24 1 0.3533 -2.3906 -0.0002 25 1 1.9135 -5.3335 2.1041 26 1 0.4296 -6.2811 1.5545 27 1 -0.6209 -7.1352 -0.4594 28 1 1.6110 -10.0021 -2.5714 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262107001.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:56 Heat of formation + Delta-G solvation = 17.417347 kcal Electronic energy + Delta-G solvation = -14086.239156 eV Core-core repulsion = 11523.819314 eV Total energy + Delta-G solvation = -2562.419842 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.98739 -40.46389 -37.53725 -35.89567 -33.42653 -33.26482 -30.20141 -27.56946 -24.72337 -24.12908 -22.50149 -21.43321 -20.67197 -19.80767 -19.00332 -17.76208 -16.72295 -15.99167 -15.85236 -15.68690 -15.36205 -14.97497 -14.70799 -14.37423 -13.57658 -13.37401 -12.97419 -12.85397 -12.47076 -12.16704 -11.90803 -11.64449 -11.43542 -10.98513 -10.90134 -10.44500 -10.06312 -9.20088 -8.49512 -5.99301 0.99400 1.37756 1.40890 1.52220 1.89103 2.17747 2.19248 2.30112 2.96889 3.10668 3.30070 3.73085 3.84275 3.99991 4.08874 4.16145 4.46660 4.51414 4.63361 4.80530 4.96777 5.10649 5.35721 5.38088 5.75052 5.95867 6.54199 6.57110 7.07107 7.11902 7.51556 8.05660 8.67413 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.062767 B = 0.005446 C = 0.005304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.985574 B = 5139.932945 C = 5278.228723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 0.995 3.005 4 H -0.271 1.271 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.340 4.340 8 H 0.081 0.919 9 N -0.562 5.562 10 C 0.463 3.537 11 O -0.637 6.637 12 C -0.165 4.165 13 H 0.132 0.868 14 C -0.117 4.117 15 C -0.053 4.053 16 H 0.108 0.892 17 C 0.008 3.992 18 C -0.039 4.039 19 N -0.534 5.534 20 C 0.193 3.807 21 N -0.559 5.559 22 H 0.434 0.566 23 H 0.279 0.721 24 H 0.398 0.602 25 H 0.097 0.903 26 H 0.133 0.867 27 H 0.174 0.826 28 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.112 -13.772 -0.960 13.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.211 4.211 3 Si 0.818 3.182 4 H -0.196 1.196 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.470 4.470 8 H 0.099 0.901 9 N -0.197 5.197 10 C 0.251 3.749 11 O -0.526 6.526 12 C -0.187 4.187 13 H 0.149 0.851 14 C -0.155 4.155 15 C -0.073 4.073 16 H 0.126 0.874 17 C -0.108 4.108 18 C -0.186 4.186 19 N -0.254 5.254 20 C -0.090 4.090 21 N -0.163 5.163 22 H 0.274 0.726 23 H 0.089 0.911 24 H 0.232 0.768 25 H 0.116 0.884 26 H 0.152 0.848 27 H 0.191 0.809 28 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 0.979 -13.996 -1.189 14.080 hybrid contribution 1.044 1.430 0.062 1.772 sum 2.023 -12.565 -1.126 12.777 Atomic orbital electron populations 1.69676 1.06926 1.29581 1.49559 1.26097 0.96562 1.02554 0.95919 0.84965 0.77786 0.76400 0.79052 1.19644 1.19367 1.19483 1.19691 0.92809 0.83968 1.50490 0.90115 1.41874 1.09435 1.04576 1.63802 1.19879 0.87381 0.85313 0.82303 1.90462 1.15813 1.88075 1.58279 1.22172 1.01580 0.88776 1.06179 0.85067 1.23179 1.02909 0.99430 0.89978 1.19967 0.98139 0.89204 1.00007 0.87394 1.20255 0.92468 0.94947 1.03162 1.22231 0.95377 0.97155 1.03857 1.70269 1.24267 1.14227 1.16603 1.25785 0.83684 0.98012 1.01565 1.43198 1.11526 1.21691 1.39852 0.72605 0.91107 0.76824 0.88412 0.84849 0.80890 0.73363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.71 13.05 21.66 0.28 -49.43 15 2 C -0.01 -0.59 5.50 84.92 0.47 -0.12 15 3 Si 0.99 42.72 29.55 68.60 2.03 44.74 15 4 H -0.27 -11.50 7.11 99.48 0.71 -10.80 15 5 H -0.27 -10.87 7.11 99.48 0.71 -10.16 15 6 H -0.27 -11.38 7.11 99.48 0.71 -10.67 15 7 C -0.34 -19.45 9.68 84.04 0.81 -18.64 15 8 H 0.08 4.88 7.16 -2.91 -0.02 4.85 15 9 N -0.56 -29.39 5.29 -306.98 -1.62 -31.01 15 10 C 0.46 22.41 7.57 87.66 0.66 23.08 15 11 O -0.64 -35.38 15.83 -3.07 -0.05 -35.43 15 12 C -0.17 -5.82 5.71 -11.54 -0.07 -5.88 15 13 H 0.13 4.19 7.98 -2.39 -0.02 4.17 15 14 C -0.12 -3.29 9.76 30.60 0.30 -2.99 15 15 C -0.05 -1.59 5.84 -11.54 -0.07 -1.66 15 16 H 0.11 3.54 7.67 -2.38 -0.02 3.53 15 17 C 0.01 0.21 6.92 40.95 0.28 0.49 15 18 C -0.04 -1.07 10.94 83.52 0.91 -0.16 15 19 N -0.53 -14.53 11.25 -200.31 -2.25 -16.78 15 20 C 0.19 3.76 13.04 180.26 2.35 6.11 15 21 N -0.56 -11.22 6.15 -186.49 -1.15 -12.37 15 22 H 0.43 6.05 8.96 -92.70 -0.83 5.22 15 23 H 0.28 14.15 8.31 -92.71 -0.77 13.38 15 24 H 0.40 19.87 7.90 -92.71 -0.73 19.14 15 25 H 0.10 2.89 8.14 -2.39 -0.02 2.87 15 26 H 0.13 2.93 7.95 -2.38 -0.02 2.91 15 27 H 0.17 4.31 8.06 -2.91 -0.02 4.29 15 28 H 0.25 2.23 8.06 -2.91 -0.02 2.21 15 Total: -1.00 -71.65 257.58 2.54 -69.11 By element: Atomic # 1 Polarization: 31.30 SS G_CDS: -0.36 Total: 30.95 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 5.66 Total: 0.22 kcal Atomic # 7 Polarization: -104.86 SS G_CDS: -4.74 Total: -109.60 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -0.05 Total: -35.43 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -71.65 2.54 -69.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262107001.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.532 kcal (2) G-P(sol) polarization free energy of solvation -71.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds