Wall clock time and date at job start Mon Mar 30 2020 03:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35398 * 119.63003 * 2 1 4 4 C 1.41843 * 119.20378 * 180.23329 * 3 2 1 5 5 N 1.33432 * 120.71153 * 179.79230 * 4 3 2 6 6 N 1.40107 * 119.99606 * 179.72069 * 5 4 3 7 7 C 1.34783 * 119.99646 * 179.97438 * 6 5 4 8 8 O 1.22186 * 120.00096 * 359.97438 * 7 6 5 9 9 C 1.39044 * 119.99441 * 179.97438 * 7 6 5 10 10 H 1.08005 * 120.00518 * 353.63244 * 9 7 6 11 11 C 1.39782 * 119.99670 * 173.63536 * 9 7 6 12 12 N 1.30863 * 120.00084 * 6.33658 * 11 9 7 13 13 Si 1.86809 * 120.00056 * 186.34150 * 11 9 7 14 14 H 1.48495 * 109.46996 * 94.98292 * 13 11 9 15 15 H 1.48497 * 109.47052 * 214.98589 * 13 11 9 16 16 H 1.48507 * 109.46815 * 334.98318 * 13 11 9 17 17 C 1.41840 * 118.57152 * 359.51058 * 4 3 2 18 18 C 1.35404 * 119.20120 * 0.25383 * 17 4 3 19 19 N 1.35637 * 119.63375 * 179.73847 * 2 1 3 20 20 H 0.97003 * 119.22641 * 359.97438 * 19 2 1 21 21 H 1.09004 * 109.46844 * 270.26253 * 1 2 3 22 22 H 1.08994 * 109.46991 * 30.26082 * 1 2 3 23 23 H 1.08999 * 109.46998 * 150.26462 * 1 2 3 24 24 H 1.08008 * 120.40193 * 0.02562 * 3 2 1 25 25 H 0.96995 * 120.00091 * 359.97438 * 6 5 4 26 26 H 0.97004 * 119.99990 * 180.02562 * 12 11 9 27 27 H 1.07998 * 120.39718 * 180.27211 * 17 4 3 28 28 H 1.08001 * 119.62855 * 179.97438 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1765 1.1769 0.0000 4 6 3.5948 1.1664 -0.0050 5 7 4.2848 2.3085 -0.0093 6 7 5.6856 2.2806 -0.0084 7 6 6.3826 3.4342 -0.0132 8 8 5.7928 4.5043 -0.0190 9 6 7.7727 3.4065 -0.0117 10 1 8.2941 2.4669 0.0970 11 6 8.4956 4.5948 -0.1510 12 7 7.8700 5.7442 -0.1580 13 14 10.3546 4.5421 -0.3270 14 1 10.7163 4.5683 -1.7670 15 1 10.9499 5.7194 0.3545 16 1 10.8752 3.2964 0.2915 17 6 4.2639 -0.0843 0.0007 18 6 3.5334 -1.2243 0.0056 19 7 2.1777 -1.1790 0.0054 20 1 1.6761 -2.0092 0.0095 21 1 -0.3633 0.0047 1.0277 22 1 -0.3633 0.8876 -0.5179 23 1 -0.3633 -0.8923 -0.5097 24 1 1.6369 2.1126 0.0004 25 1 6.1538 1.4311 -0.0042 26 1 8.3716 6.5688 -0.2550 27 1 5.3431 -0.1267 0.0015 28 1 4.0357 -2.1804 0.0095 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001301221509.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:51 Heat of formation + Delta-G solvation = 4.055753 kcal Electronic energy + Delta-G solvation = -14042.059932 eV Core-core repulsion = 11479.060688 eV Total energy + Delta-G solvation = -2562.999244 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.24155 -39.30633 -36.71448 -34.66939 -33.80130 -33.28602 -30.22950 -28.77243 -27.70341 -23.93887 -23.05743 -21.36641 -19.67931 -19.22020 -17.94760 -17.63598 -16.67584 -15.87350 -15.63283 -15.60340 -14.84604 -14.75786 -14.22829 -13.70462 -13.49434 -13.25774 -13.03507 -12.93743 -12.64536 -12.54071 -12.53689 -11.98505 -10.97852 -10.51984 -10.18914 -10.13150 -9.84857 -8.37284 -7.72326 -6.97747 0.59356 0.64029 1.37013 1.40904 1.57832 2.20704 2.27959 2.39800 2.75536 2.89072 3.77444 3.82637 4.04275 4.29340 4.41402 4.56383 4.82016 4.83224 4.99475 5.19130 5.24410 5.36952 5.56166 5.70449 5.90193 6.15209 6.26058 6.64920 6.71271 7.32000 7.76301 8.50223 8.78434 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.066200 B = 0.005613 C = 0.005193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.857635 B = 4986.904634 C = 5390.975921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.167 3.833 3 C -0.228 4.228 4 C 0.132 3.868 5 N -0.373 5.373 6 N -0.601 5.601 7 C 0.545 3.455 8 O -0.633 6.633 9 C -0.567 4.567 10 H 0.089 0.911 11 C 0.025 3.975 12 N -0.805 5.805 13 Si 1.015 2.985 14 H -0.259 1.259 15 H -0.266 1.266 16 H -0.244 1.244 17 C -0.298 4.298 18 C 0.168 3.832 19 N -0.587 5.587 20 H 0.439 0.561 21 H 0.099 0.901 22 H 0.086 0.914 23 H 0.107 0.893 24 H 0.121 0.879 25 H 0.369 0.631 26 H 0.279 0.721 27 H 0.119 0.881 28 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.880 -21.304 -0.114 23.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.056 3.944 3 C -0.256 4.256 4 C -0.043 4.043 5 N -0.189 5.189 6 N -0.344 5.344 7 C 0.353 3.647 8 O -0.520 6.520 9 C -0.604 4.604 10 H 0.107 0.893 11 C -0.192 4.192 12 N -0.433 5.433 13 Si 0.832 3.168 14 H -0.183 1.183 15 H -0.190 1.190 16 H -0.167 1.167 17 C -0.327 4.327 18 C 0.038 3.962 19 N -0.198 5.198 20 H 0.279 0.721 21 H 0.118 0.882 22 H 0.105 0.895 23 H 0.126 0.874 24 H 0.139 0.861 25 H 0.206 0.794 26 H 0.089 0.911 27 H 0.137 0.863 28 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -11.208 -19.259 -0.123 22.283 hybrid contribution 1.148 -0.686 -0.041 1.338 sum -10.060 -19.945 -0.164 22.339 Atomic orbital electron populations 1.21059 0.84785 1.05869 1.05204 1.20432 0.95908 0.84562 0.93492 1.20108 0.90637 0.98333 1.16480 1.20193 0.95441 0.90637 0.98032 1.76316 0.92013 1.24491 1.26083 1.46792 1.01038 1.08481 1.78133 1.16720 0.88469 0.81515 0.77947 1.90655 1.72622 1.30805 1.57954 1.19897 0.90773 0.96443 1.53261 0.89306 1.27221 1.07627 0.93418 0.90948 1.70368 1.40134 0.99477 1.33349 0.84783 0.72707 0.79689 0.79581 1.18297 1.19036 1.16684 1.21098 1.00412 0.92618 1.18585 1.22053 0.82907 0.99976 0.91272 1.40906 1.05406 1.08578 1.64911 0.72121 0.88215 0.89535 0.87438 0.86079 0.79351 0.91057 0.86263 0.77014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 10.07 71.24 0.72 -0.26 15 2 C 0.17 3.13 6.81 41.32 0.28 3.42 15 3 C -0.23 -7.54 9.64 22.51 0.22 -7.32 15 4 C 0.13 5.62 6.75 40.68 0.27 5.89 15 5 N -0.37 -21.49 11.21 -51.23 -0.57 -22.06 15 6 N -0.60 -35.79 6.16 -181.43 -1.12 -36.91 15 7 C 0.54 37.88 7.59 84.43 0.64 38.52 15 8 O -0.63 -50.41 15.18 -5.93 -0.09 -50.50 15 9 C -0.57 -35.90 9.15 22.84 0.21 -35.69 15 10 H 0.09 4.97 7.85 -2.91 -0.02 4.95 15 11 C 0.03 1.52 5.48 85.21 0.47 1.99 15 12 N -0.81 -53.17 11.70 21.79 0.25 -52.92 15 13 Si 1.02 43.03 29.56 68.60 2.03 45.06 15 14 H -0.26 -10.36 7.11 99.48 0.71 -9.65 15 15 H -0.27 -10.65 7.11 99.48 0.71 -9.95 15 16 H -0.24 -9.46 7.11 99.48 0.71 -8.75 15 17 C -0.30 -9.52 9.45 22.51 0.21 -9.31 15 18 C 0.17 2.84 11.18 83.45 0.93 3.77 15 19 N -0.59 -7.22 5.24 -182.97 -0.96 -8.18 15 20 H 0.44 0.75 8.77 -92.71 -0.81 -0.06 15 21 H 0.10 0.65 8.14 -2.38 -0.02 0.63 15 22 H 0.09 0.90 8.07 -2.39 -0.02 0.88 15 23 H 0.11 0.21 8.14 -2.39 -0.02 0.19 15 24 H 0.12 4.26 8.06 -2.91 -0.02 4.24 15 25 H 0.37 18.90 6.47 -213.32 -1.38 17.52 15 26 H 0.28 16.36 8.30 -92.71 -0.77 15.59 15 27 H 0.12 3.98 6.23 -2.91 -0.02 3.96 15 28 H 0.21 1.21 8.06 -2.91 -0.02 1.18 15 Total: -1.00 -106.30 254.57 2.51 -103.79 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -0.99 Total: 20.71 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 3.95 Total: 1.00 kcal Atomic # 7 Polarization: -117.66 SS G_CDS: -2.40 Total: -120.06 kcal Atomic # 8 Polarization: -50.41 SS G_CDS: -0.09 Total: -50.50 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -106.30 2.51 -103.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001301221509.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.845 kcal (2) G-P(sol) polarization free energy of solvation -106.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds