Wall clock time and date at job start Mon Mar 30 2020 03:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38503 * 120.00662 * 2 1 4 4 C 1.40168 * 117.80357 * 180.02562 * 3 2 1 5 5 C 1.47984 * 121.15464 * 179.97438 * 4 3 2 6 6 O 1.21570 * 119.99759 * 329.73762 * 5 4 3 7 7 N 1.34772 * 119.99779 * 149.73271 * 5 4 3 8 8 C 1.46504 * 119.99677 * 183.54762 * 7 5 4 9 9 C 1.36789 * 120.00504 * 3.55299 * 7 5 4 10 10 H 1.08010 * 119.99628 * 321.33088 * 9 7 5 11 11 C 1.39105 * 120.00502 * 141.33257 * 9 7 5 12 12 N 1.31322 * 120.00228 * 161.65423 * 11 9 7 13 13 Si 1.86799 * 119.99732 * 341.65239 * 11 9 7 14 14 H 1.48501 * 109.47129 * 95.35078 * 13 11 9 15 15 H 1.48497 * 109.46945 * 215.35328 * 13 11 9 16 16 H 1.48497 * 109.46987 * 335.35124 * 13 11 9 17 17 C 1.39861 * 117.69253 * 0.02562 * 4 3 2 18 18 N 1.31867 * 119.64076 * 359.97438 * 17 4 3 19 19 N 1.28270 * 122.33777 * 0.02562 * 18 17 4 20 20 H 1.09004 * 109.46900 * 269.97761 * 1 2 3 21 21 H 1.08995 * 109.47382 * 29.97843 * 1 2 3 22 22 H 1.09008 * 109.46959 * 149.98121 * 1 2 3 23 23 H 1.07998 * 121.09868 * 359.97438 * 3 2 1 24 24 H 1.09008 * 109.46700 * 85.11121 * 8 7 5 25 25 H 1.08999 * 109.47289 * 205.10472 * 8 7 5 26 26 H 1.09001 * 109.47488 * 325.11505 * 8 7 5 27 27 H 0.96994 * 120.00182 * 180.02562 * 12 11 9 28 28 H 1.07998 * 120.18001 * 180.02562 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1994 0.0000 4 6 3.6003 1.1455 -0.0006 5 6 4.4140 2.3816 -0.0012 6 8 3.9884 3.3891 -0.5318 7 7 5.6268 2.3902 0.5866 8 6 6.3990 3.6333 0.6545 9 6 6.1367 1.2383 1.1198 10 1 5.4868 0.5501 1.6399 11 6 7.4923 0.9533 0.9923 12 7 8.0543 0.0680 1.7828 13 14 8.5131 1.8300 -0.3033 14 1 9.1873 3.0034 0.3081 15 1 9.5350 0.8974 -0.8428 16 1 7.6284 2.2861 -1.4053 17 6 4.2022 -0.1170 -0.0016 18 7 3.4483 -1.1989 -0.0016 19 7 2.1668 -1.1422 -0.0010 20 1 -0.3633 -0.0004 1.0277 21 1 -0.3634 0.8901 -0.5135 22 1 -0.3633 -0.8899 -0.5142 23 1 1.6778 2.1449 -0.0004 24 1 6.0889 4.2064 1.5283 25 1 7.4604 3.3979 0.7324 26 1 6.2221 4.2206 -0.2466 27 1 8.9996 -0.1304 1.6941 28 1 5.2785 -0.2053 -0.0017 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326142989.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:18 Heat of formation + Delta-G solvation = 38.219170 kcal Electronic energy + Delta-G solvation = -14852.220049 eV Core-core repulsion = 12290.702242 eV Total energy + Delta-G solvation = -2561.517807 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.61790 -38.70161 -35.28470 -33.47615 -32.54169 -32.25439 -27.91778 -27.26275 -25.41259 -23.83967 -22.84201 -19.46580 -17.90482 -17.33830 -16.28022 -15.74792 -15.12785 -14.82632 -14.59363 -14.14006 -13.49289 -12.92617 -12.86406 -12.71615 -12.53625 -12.39376 -12.18597 -11.76182 -11.04399 -10.67243 -10.28280 -10.16460 -9.73928 -9.55034 -9.32755 -9.13565 -8.79222 -8.07244 -6.75466 -4.39233 1.02855 1.44881 2.88877 3.07069 3.13398 3.46481 3.87885 3.97755 4.20850 4.50462 4.65446 5.00422 5.17161 5.27051 5.43176 5.62605 5.64799 5.81046 5.88250 6.09669 6.13403 6.29860 6.38594 6.53688 6.86850 7.02604 7.73374 7.91150 8.58821 8.97084 9.25102 9.31398 10.31562 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.037402 B = 0.010103 C = 0.008510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.440807 B = 2770.848521 C = 3289.608352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.047 3.953 3 C -0.087 4.087 4 C -0.091 4.091 5 C 0.511 3.489 6 O -0.589 6.589 7 N -0.446 5.446 8 C 0.072 3.928 9 C -0.369 4.369 10 H 0.114 0.886 11 C 0.070 3.930 12 N -0.839 5.839 13 Si 0.886 3.114 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.258 1.258 17 C 0.077 3.923 18 N -0.256 5.256 19 N -0.252 5.252 20 H 0.078 0.922 21 H 0.074 0.926 22 H 0.078 0.922 23 H 0.148 0.852 24 H 0.055 0.945 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.282 0.718 28 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.205 2.296 -2.264 6.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.098 4.098 3 C -0.117 4.117 4 C -0.106 4.106 5 C 0.300 3.700 6 O -0.475 6.475 7 N -0.164 5.164 8 C -0.070 4.070 9 C -0.496 4.496 10 H 0.131 0.869 11 C -0.141 4.141 12 N -0.471 5.471 13 Si 0.712 3.288 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.182 1.182 17 C -0.087 4.087 18 N -0.096 5.096 19 N -0.095 5.095 20 H 0.096 0.904 21 H 0.093 0.907 22 H 0.097 0.903 23 H 0.166 0.834 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -6.240 1.017 -2.430 6.773 hybrid contribution 0.906 1.955 -0.327 2.179 sum -5.334 2.972 -2.757 6.700 Atomic orbital electron populations 1.20586 0.87969 1.03478 1.03121 1.22675 0.98640 0.90397 0.98086 1.22283 0.93549 0.99769 0.96129 1.21212 0.94219 0.96302 0.98844 1.17859 0.83798 0.86939 0.81385 1.90655 1.73312 1.34699 1.48826 1.43476 1.15381 1.08812 1.48747 1.21881 0.95875 0.87525 1.01719 1.19309 0.94754 0.99294 1.36201 0.86901 1.25419 0.96783 0.95915 0.95997 1.69684 1.13106 1.31275 1.33074 0.86784 0.80290 0.79106 0.82572 1.19739 1.20956 1.18232 1.25941 1.04867 0.87873 0.90006 1.73054 0.98540 1.27769 1.10238 1.72690 1.02964 1.24943 1.08916 0.90374 0.90667 0.90329 0.83418 0.92662 0.91782 0.91515 0.90702 0.77213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.09 10.19 36.01 0.37 -0.72 15 2 C 0.05 0.79 6.86 -82.46 -0.57 0.23 15 3 C -0.09 -1.58 9.47 -38.76 -0.37 -1.94 15 4 C -0.09 -1.93 5.59 -104.57 -0.58 -2.52 15 5 C 0.51 11.78 7.47 -12.27 -0.09 11.69 15 6 O -0.59 -14.36 16.48 5.30 0.09 -14.27 15 7 N -0.45 -10.31 2.57 -123.23 -0.32 -10.62 15 8 C 0.07 1.49 8.98 59.85 0.54 2.03 15 9 C -0.37 -8.97 6.74 -15.02 -0.10 -9.07 15 10 H 0.11 2.92 6.15 -52.48 -0.32 2.59 15 11 C 0.07 1.70 5.34 -17.45 -0.09 1.61 15 12 N -0.84 -21.47 13.95 55.50 0.77 -20.69 15 13 Si 0.89 18.95 24.82 -169.99 -4.22 14.73 15 14 H -0.27 -5.52 6.73 56.52 0.38 -5.14 15 15 H -0.28 -6.04 7.11 56.52 0.40 -5.63 15 16 H -0.26 -5.65 7.10 56.52 0.40 -5.25 15 17 C 0.08 1.65 9.06 -16.93 -0.15 1.50 15 18 N -0.26 -5.49 11.49 30.80 0.35 -5.13 15 19 N -0.25 -4.95 11.40 33.57 0.38 -4.56 15 20 H 0.08 0.81 8.14 -51.93 -0.42 0.38 15 21 H 0.07 0.72 8.09 -51.93 -0.42 0.30 15 22 H 0.08 0.86 8.14 -51.92 -0.42 0.44 15 23 H 0.15 2.36 8.03 -52.49 -0.42 1.94 15 24 H 0.05 1.04 8.14 -51.92 -0.42 0.61 15 25 H 0.06 1.30 3.37 -51.93 -0.17 1.13 15 26 H 0.07 1.32 7.52 -51.93 -0.39 0.93 15 27 H 0.28 6.70 8.31 -40.82 -0.34 6.36 15 28 H 0.21 4.74 5.34 -52.49 -0.28 4.46 15 LS Contribution 242.57 15.07 3.66 3.66 Total: -1.00 -28.20 242.57 -2.77 -30.97 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -2.43 Total: 3.13 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -1.05 Total: 2.80 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: 1.19 Total: -41.01 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: 0.09 Total: -14.27 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -4.22 Total: 14.73 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -28.20 -2.77 -30.97 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326142989.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.188 kcal (2) G-P(sol) polarization free energy of solvation -28.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds