Wall clock time and date at job start Mon Mar 30 2020 03:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38503 * 120.00662 * 2 1 4 4 C 1.40168 * 117.80357 * 180.02562 * 3 2 1 5 5 C 1.47984 * 121.15464 * 179.97438 * 4 3 2 6 6 O 1.21570 * 119.99759 * 329.73762 * 5 4 3 7 7 N 1.34772 * 119.99779 * 149.73271 * 5 4 3 8 8 C 1.46504 * 119.99677 * 183.54762 * 7 5 4 9 9 C 1.36789 * 120.00504 * 3.55299 * 7 5 4 10 10 H 1.08010 * 119.99628 * 321.33088 * 9 7 5 11 11 C 1.39105 * 120.00502 * 141.33257 * 9 7 5 12 12 N 1.31322 * 120.00228 * 161.65423 * 11 9 7 13 13 Si 1.86799 * 119.99732 * 341.65239 * 11 9 7 14 14 H 1.48501 * 109.47129 * 95.35078 * 13 11 9 15 15 H 1.48497 * 109.46945 * 215.35328 * 13 11 9 16 16 H 1.48497 * 109.46987 * 335.35124 * 13 11 9 17 17 C 1.39861 * 117.69253 * 0.02562 * 4 3 2 18 18 N 1.31867 * 119.64076 * 359.97438 * 17 4 3 19 19 N 1.28270 * 122.33777 * 0.02562 * 18 17 4 20 20 H 1.09004 * 109.46900 * 269.97761 * 1 2 3 21 21 H 1.08995 * 109.47382 * 29.97843 * 1 2 3 22 22 H 1.09008 * 109.46959 * 149.98121 * 1 2 3 23 23 H 1.07998 * 121.09868 * 359.97438 * 3 2 1 24 24 H 1.09008 * 109.46700 * 85.11121 * 8 7 5 25 25 H 1.08999 * 109.47289 * 205.10472 * 8 7 5 26 26 H 1.09001 * 109.47488 * 325.11505 * 8 7 5 27 27 H 0.96994 * 120.00182 * 180.02562 * 12 11 9 28 28 H 1.07998 * 120.18001 * 180.02562 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1994 0.0000 4 6 3.6003 1.1455 -0.0006 5 6 4.4140 2.3816 -0.0012 6 8 3.9884 3.3891 -0.5318 7 7 5.6268 2.3902 0.5866 8 6 6.3990 3.6333 0.6545 9 6 6.1367 1.2383 1.1198 10 1 5.4868 0.5501 1.6399 11 6 7.4923 0.9533 0.9923 12 7 8.0543 0.0680 1.7828 13 14 8.5131 1.8300 -0.3033 14 1 9.1873 3.0034 0.3081 15 1 9.5350 0.8974 -0.8428 16 1 7.6284 2.2861 -1.4053 17 6 4.2022 -0.1170 -0.0016 18 7 3.4483 -1.1989 -0.0016 19 7 2.1668 -1.1422 -0.0010 20 1 -0.3633 -0.0004 1.0277 21 1 -0.3634 0.8901 -0.5135 22 1 -0.3633 -0.8899 -0.5142 23 1 1.6778 2.1449 -0.0004 24 1 6.0889 4.2064 1.5283 25 1 7.4604 3.3979 0.7324 26 1 6.2221 4.2206 -0.2466 27 1 8.9996 -0.1304 1.6941 28 1 5.2785 -0.2053 -0.0017 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326142989.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:18 Heat of formation + Delta-G solvation = 18.696317 kcal Electronic energy + Delta-G solvation = -14853.066623 eV Core-core repulsion = 12290.702242 eV Total energy + Delta-G solvation = -2562.364381 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.19657 -40.44928 -37.10587 -34.86430 -34.13824 -34.11732 -29.16759 -28.92258 -27.23024 -25.42528 -24.34964 -21.22410 -19.66025 -18.98226 -17.95858 -17.31770 -16.85132 -16.49323 -16.17584 -15.79210 -14.96882 -14.69160 -14.43512 -14.16012 -14.14615 -13.71082 -13.47838 -13.17087 -12.80547 -12.36691 -11.91356 -11.84897 -11.47211 -11.12526 -11.03738 -10.61715 -10.49622 -9.89421 -8.62249 -6.29822 -0.55048 -0.04667 1.18847 1.32860 1.43375 1.73977 2.10268 2.31313 2.58185 2.84262 3.14525 3.54352 3.61866 3.75459 3.93733 4.23285 4.38941 4.48747 4.54687 4.72339 4.79744 4.88890 5.10234 5.13311 5.22448 5.38209 5.86190 6.04239 6.72955 7.12503 7.48157 7.70915 8.48666 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.037402 B = 0.010103 C = 0.008510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.440807 B = 2770.848521 C = 3289.608352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.059 3.941 3 C -0.074 4.074 4 C -0.116 4.116 5 C 0.511 3.489 6 O -0.604 6.604 7 N -0.456 5.456 8 C 0.067 3.933 9 C -0.366 4.366 10 H 0.089 0.911 11 C 0.038 3.962 12 N -0.878 5.878 13 Si 0.936 3.064 14 H -0.249 1.249 15 H -0.282 1.282 16 H -0.266 1.266 17 C 0.070 3.930 18 N -0.278 5.278 19 N -0.267 5.267 20 H 0.099 0.901 21 H 0.103 0.897 22 H 0.088 0.912 23 H 0.175 0.825 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.287 0.713 28 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.620 3.371 -2.761 8.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.087 4.087 3 C -0.104 4.104 4 C -0.130 4.130 5 C 0.301 3.699 6 O -0.490 6.490 7 N -0.174 5.174 8 C -0.074 4.074 9 C -0.493 4.493 10 H 0.106 0.894 11 C -0.170 4.170 12 N -0.512 5.512 13 Si 0.760 3.240 14 H -0.175 1.175 15 H -0.209 1.209 16 H -0.190 1.190 17 C -0.094 4.094 18 N -0.117 5.117 19 N -0.110 5.110 20 H 0.117 0.883 21 H 0.122 0.878 22 H 0.107 0.893 23 H 0.192 0.808 24 H 0.091 0.909 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.098 0.902 28 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -7.649 2.090 -2.916 8.448 hybrid contribution 1.157 1.606 -0.164 1.986 sum -6.492 3.696 -3.080 8.081 Atomic orbital electron populations 1.20811 0.83652 1.05457 1.05002 1.23473 1.01125 0.88926 0.95166 1.22672 0.92257 1.01446 0.93994 1.21215 0.95661 0.95271 1.00864 1.18124 0.83804 0.87279 0.80732 1.90629 1.73621 1.35369 1.49421 1.43589 1.15770 1.09213 1.48867 1.22024 0.95772 0.86744 1.02908 1.19079 0.94619 0.99741 1.35881 0.89364 1.25930 0.97506 0.96469 0.97104 1.69740 1.13775 1.33018 1.34677 0.86000 0.78931 0.78885 0.80156 1.17478 1.20851 1.19045 1.25573 1.04146 0.88446 0.91269 1.72996 0.99649 1.27951 1.11101 1.72647 1.02203 1.26531 1.09639 0.88277 0.87799 0.89299 0.80767 0.90948 0.91562 0.90777 0.90234 0.79077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.74 10.19 71.24 0.73 -1.01 15 2 C 0.06 1.83 6.86 42.61 0.29 2.12 15 3 C -0.07 -2.50 9.47 22.80 0.22 -2.28 15 4 C -0.12 -4.87 5.59 -19.83 -0.11 -4.98 15 5 C 0.51 23.27 7.47 86.83 0.65 23.92 15 6 O -0.60 -28.61 16.48 -3.94 -0.06 -28.67 15 7 N -0.46 -20.96 2.57 -662.04 -1.70 -22.66 15 8 C 0.07 2.67 8.98 127.77 1.15 3.82 15 9 C -0.37 -18.11 6.74 84.13 0.57 -17.54 15 10 H 0.09 4.75 6.15 -2.91 -0.02 4.74 15 11 C 0.04 1.85 5.34 84.98 0.45 2.31 15 12 N -0.88 -45.73 13.95 21.69 0.30 -45.43 15 13 Si 0.94 38.60 24.82 68.60 1.70 40.30 15 14 H -0.25 -9.40 6.73 99.48 0.67 -8.73 15 15 H -0.28 -11.52 7.11 99.48 0.71 -10.81 15 16 H -0.27 -11.24 7.10 99.48 0.71 -10.53 15 17 C 0.07 3.09 9.06 85.08 0.77 3.86 15 18 N -0.28 -12.01 11.49 -56.48 -0.65 -12.66 15 19 N -0.27 -10.22 11.40 -47.70 -0.54 -10.77 15 20 H 0.10 1.58 8.14 -2.38 -0.02 1.56 15 21 H 0.10 1.46 8.09 -2.39 -0.02 1.44 15 22 H 0.09 1.58 8.14 -2.38 -0.02 1.56 15 23 H 0.17 4.94 8.03 -2.91 -0.02 4.92 15 24 H 0.07 2.60 8.14 -2.38 -0.02 2.58 15 25 H 0.07 2.58 3.37 -2.39 -0.01 2.58 15 26 H 0.07 2.82 7.52 -2.39 -0.02 2.80 15 27 H 0.29 13.82 8.31 -92.71 -0.77 13.05 15 28 H 0.19 9.07 5.34 -2.91 -0.02 9.06 15 Total: -1.00 -60.36 242.57 4.91 -55.45 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 1.15 Total: 14.22 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: 4.71 Total: 10.22 kcal Atomic # 7 Polarization: -88.93 SS G_CDS: -2.59 Total: -91.52 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -0.06 Total: -28.67 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 1.70 Total: 40.30 kcal Total: -60.36 4.91 -55.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326142989.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.149 kcal (2) G-P(sol) polarization free energy of solvation -60.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds