Wall clock time and date at job start Mon Mar 30 2020 03:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38828 * 120.41168 * 2 1 4 4 C 1.38789 * 118.52869 * 180.02562 * 3 2 1 5 5 N 1.32117 * 119.17759 * 0.02562 * 4 3 2 6 6 C 1.32543 * 120.75427 * 359.97438 * 5 4 3 7 7 C 1.48318 * 119.19523 * 180.02562 * 6 5 4 8 8 O 1.21543 * 120.00114 * 156.06460 * 7 6 5 9 9 N 1.34774 * 120.00194 * 336.05912 * 7 6 5 10 10 C 1.46500 * 120.00517 * 185.57558 * 9 7 6 11 11 C 1.36685 * 119.99688 * 5.58388 * 9 7 6 12 12 H 1.07999 * 120.00232 * 325.63935 * 11 9 7 13 13 C 1.39175 * 120.00200 * 145.64373 * 11 9 7 14 14 N 1.31277 * 119.99866 * 4.97959 * 13 11 9 15 15 Si 1.86801 * 120.00247 * 184.97973 * 13 11 9 16 16 H 1.48503 * 109.47081 * 89.99653 * 15 13 11 17 17 H 1.48501 * 109.47225 * 209.99473 * 15 13 11 18 18 H 1.48498 * 109.46913 * 329.99973 * 15 13 11 19 19 N 1.32085 * 120.41092 * 179.71985 * 2 1 3 20 20 H 1.08994 * 109.47360 * 90.00118 * 1 2 3 21 21 H 1.09001 * 109.47180 * 210.00055 * 1 2 3 22 22 H 1.09004 * 109.47421 * 329.99676 * 1 2 3 23 23 H 1.08001 * 120.73680 * 359.97438 * 3 2 1 24 24 H 1.08000 * 120.41465 * 179.97438 * 4 3 2 25 25 H 1.09003 * 109.46923 * 5.20174 * 10 9 7 26 26 H 1.08998 * 109.47164 * 125.19880 * 10 9 7 27 27 H 1.08999 * 109.47545 * 245.20295 * 10 9 7 28 28 H 0.97007 * 120.00145 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2097 1.1973 0.0000 4 6 3.5969 1.1517 -0.0005 5 7 4.2027 -0.0224 -0.0016 6 6 3.5013 -1.1470 -0.0015 7 6 4.2171 -2.4461 -0.0021 8 8 3.6679 -3.4427 0.4249 9 7 5.4764 -2.5214 -0.4763 10 6 6.1395 -3.8228 -0.5907 11 6 6.1350 -1.3836 -0.8502 12 1 5.5892 -0.5657 -1.2967 13 6 7.5091 -1.2791 -0.6555 14 7 8.1882 -2.3078 -0.2040 15 14 8.3872 0.3250 -1.0367 16 1 8.4008 1.1822 0.1759 17 1 9.7826 0.0381 -1.4558 18 1 7.6760 1.0301 -2.1332 19 7 2.1756 -1.1391 0.0056 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3634 0.8900 0.5139 23 1 1.6886 2.1432 -0.0004 24 1 4.1739 2.0646 -0.0010 25 1 5.4339 -4.6137 -0.3361 26 1 6.4895 -3.9635 -1.6133 27 1 6.9883 -3.8595 0.0921 28 1 9.1460 -2.2349 -0.0680 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326799036.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:13 Heat of formation + Delta-G solvation = 36.969271 kcal Electronic energy + Delta-G solvation = -14843.912588 eV Core-core repulsion = 12282.340581 eV Total energy + Delta-G solvation = -2561.572007 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.56178 -38.06070 -34.87031 -33.89922 -32.00733 -31.44377 -28.37654 -26.63449 -25.19935 -23.34092 -22.54188 -19.50791 -17.92813 -17.06612 -15.91266 -15.43386 -14.84726 -14.56065 -14.27143 -13.85511 -13.68287 -12.94435 -12.71536 -12.60287 -12.18440 -11.78250 -11.27075 -11.13037 -10.97757 -10.58812 -10.37449 -10.23961 -9.90662 -9.16753 -9.03828 -8.63640 -8.42355 -7.64682 -6.25122 -3.93518 1.13079 1.60993 3.15451 3.22120 3.25418 3.64864 3.94382 4.22020 4.52294 4.68096 4.81115 5.13412 5.22079 5.36074 5.47232 5.59615 5.63389 5.98679 6.10121 6.17056 6.71824 6.88089 6.97476 7.40023 7.55110 7.70597 7.84020 8.43198 8.65127 9.08759 9.42975 9.84051 10.66716 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.031422 B = 0.010882 C = 0.008252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.886597 B = 2572.516897 C = 3392.464347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.158 3.842 3 C -0.240 4.240 4 C 0.130 3.870 5 N -0.456 5.456 6 C 0.318 3.682 7 C 0.506 3.494 8 O -0.587 6.587 9 N -0.408 5.408 10 C 0.088 3.912 11 C -0.302 4.302 12 H 0.112 0.888 13 C 0.039 3.961 14 N -0.872 5.872 15 Si 0.932 3.068 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.270 1.270 19 N -0.488 5.488 20 H 0.080 0.920 21 H 0.080 0.920 22 H 0.075 0.925 23 H 0.139 0.861 24 H 0.164 0.836 25 H 0.046 0.954 26 H 0.044 0.956 27 H 0.105 0.895 28 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.192 8.326 -1.220 11.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.009 3.991 3 C -0.263 4.263 4 C -0.037 4.037 5 N -0.172 5.172 6 C 0.051 3.949 7 C 0.292 3.708 8 O -0.471 6.471 9 N -0.124 5.124 10 C -0.054 4.054 11 C -0.432 4.432 12 H 0.130 0.870 13 C -0.166 4.166 14 N -0.511 5.511 15 Si 0.758 3.242 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.195 1.195 19 N -0.204 5.204 20 H 0.098 0.902 21 H 0.099 0.901 22 H 0.094 0.906 23 H 0.157 0.843 24 H 0.181 0.819 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.123 0.877 28 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.716 6.828 -0.978 9.627 hybrid contribution 0.175 1.851 -0.225 1.873 sum -6.540 8.679 -1.203 10.934 Atomic orbital electron populations 1.20705 0.88343 1.03568 1.03194 1.21686 0.97367 0.88353 0.91648 1.22759 0.96882 0.99872 1.06807 1.23466 0.91826 0.97157 0.91228 1.69358 1.39307 0.97986 1.10591 1.23267 0.86271 0.93833 0.91551 1.17202 0.83772 0.85187 0.84637 1.90637 1.68816 1.35553 1.52120 1.43428 1.10371 1.08042 1.50563 1.22008 0.98026 0.83159 1.02246 1.20040 0.91203 0.93955 1.37981 0.87045 1.25516 0.96903 0.98382 0.95761 1.69759 1.08458 1.29239 1.43663 0.85857 0.77991 0.81533 0.78797 1.20071 1.21104 1.19474 1.68185 1.09447 1.29821 1.12955 0.90176 0.90110 0.90589 0.84341 0.81918 0.93488 0.93758 0.87686 0.92004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.18 10.22 36.00 0.37 -0.81 15 2 C 0.16 2.64 6.82 -82.27 -0.56 2.08 15 3 C -0.24 -3.48 9.87 -39.16 -0.39 -3.87 15 4 C 0.13 2.19 11.30 -17.22 -0.19 1.99 15 5 N -0.46 -10.11 6.74 -11.15 -0.08 -10.18 15 6 C 0.32 7.72 7.27 -157.00 -1.14 6.58 15 7 C 0.51 13.87 7.61 -12.11 -0.09 13.77 15 8 O -0.59 -17.17 16.32 5.33 0.09 -17.09 15 9 N -0.41 -11.09 2.99 -123.12 -0.37 -11.46 15 10 C 0.09 2.24 9.43 59.85 0.56 2.80 15 11 C -0.30 -8.03 7.98 -15.04 -0.12 -8.15 15 12 H 0.11 2.90 5.68 -52.49 -0.30 2.60 15 13 C 0.04 1.00 5.43 -17.44 -0.09 0.90 15 14 N -0.87 -23.13 10.36 55.51 0.58 -22.55 15 15 Si 0.93 20.04 29.56 -169.99 -5.02 15.01 15 16 H -0.27 -5.89 7.11 56.52 0.40 -5.49 15 17 H -0.29 -6.07 7.11 56.52 0.40 -5.67 15 18 H -0.27 -5.64 7.11 56.52 0.40 -5.24 15 19 N -0.49 -10.73 10.15 -7.40 -0.08 -10.80 15 20 H 0.08 0.82 8.14 -51.93 -0.42 0.40 15 21 H 0.08 0.99 8.14 -51.93 -0.42 0.57 15 22 H 0.08 0.66 8.10 -51.93 -0.42 0.24 15 23 H 0.14 1.40 8.06 -52.49 -0.42 0.97 15 24 H 0.16 2.11 8.06 -52.49 -0.42 1.69 15 25 H 0.05 1.16 6.95 -51.93 -0.36 0.80 15 26 H 0.04 1.07 8.14 -51.93 -0.42 0.65 15 27 H 0.11 2.78 5.90 -51.93 -0.31 2.48 15 28 H 0.27 6.71 8.31 -40.82 -0.34 6.37 15 LS Contribution 248.83 15.07 3.75 3.75 Total: -1.00 -32.23 248.83 -5.42 -37.65 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -2.63 Total: 0.36 kcal Atomic # 6 Polarization: 16.96 SS G_CDS: -1.66 Total: 15.30 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: 0.06 Total: -54.99 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: 0.09 Total: -17.09 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -32.23 -5.42 -37.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326799036.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.621 kcal (2) G-P(sol) polarization free energy of solvation -32.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds