Wall clock time and date at job start Mon Mar 30 2020 03:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38828 * 120.41168 * 2 1 4 4 C 1.38789 * 118.52869 * 180.02562 * 3 2 1 5 5 N 1.32117 * 119.17759 * 0.02562 * 4 3 2 6 6 C 1.32543 * 120.75427 * 359.97438 * 5 4 3 7 7 C 1.48318 * 119.19523 * 180.02562 * 6 5 4 8 8 O 1.21543 * 120.00114 * 156.06460 * 7 6 5 9 9 N 1.34774 * 120.00194 * 336.05912 * 7 6 5 10 10 C 1.46500 * 120.00517 * 185.57558 * 9 7 6 11 11 C 1.36685 * 119.99688 * 5.58388 * 9 7 6 12 12 H 1.07999 * 120.00232 * 325.63935 * 11 9 7 13 13 C 1.39175 * 120.00200 * 145.64373 * 11 9 7 14 14 N 1.31277 * 119.99866 * 4.97959 * 13 11 9 15 15 Si 1.86801 * 120.00247 * 184.97973 * 13 11 9 16 16 H 1.48503 * 109.47081 * 89.99653 * 15 13 11 17 17 H 1.48501 * 109.47225 * 209.99473 * 15 13 11 18 18 H 1.48498 * 109.46913 * 329.99973 * 15 13 11 19 19 N 1.32085 * 120.41092 * 179.71985 * 2 1 3 20 20 H 1.08994 * 109.47360 * 90.00118 * 1 2 3 21 21 H 1.09001 * 109.47180 * 210.00055 * 1 2 3 22 22 H 1.09004 * 109.47421 * 329.99676 * 1 2 3 23 23 H 1.08001 * 120.73680 * 359.97438 * 3 2 1 24 24 H 1.08000 * 120.41465 * 179.97438 * 4 3 2 25 25 H 1.09003 * 109.46923 * 5.20174 * 10 9 7 26 26 H 1.08998 * 109.47164 * 125.19880 * 10 9 7 27 27 H 1.08999 * 109.47545 * 245.20295 * 10 9 7 28 28 H 0.97007 * 120.00145 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2097 1.1973 0.0000 4 6 3.5969 1.1517 -0.0005 5 7 4.2027 -0.0224 -0.0016 6 6 3.5013 -1.1470 -0.0015 7 6 4.2171 -2.4461 -0.0021 8 8 3.6679 -3.4427 0.4249 9 7 5.4764 -2.5214 -0.4763 10 6 6.1395 -3.8228 -0.5907 11 6 6.1350 -1.3836 -0.8502 12 1 5.5892 -0.5657 -1.2967 13 6 7.5091 -1.2791 -0.6555 14 7 8.1882 -2.3078 -0.2040 15 14 8.3872 0.3250 -1.0367 16 1 8.4008 1.1822 0.1759 17 1 9.7826 0.0381 -1.4558 18 1 7.6760 1.0301 -2.1332 19 7 2.1756 -1.1391 0.0056 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3634 0.8900 0.5139 23 1 1.6886 2.1432 -0.0004 24 1 4.1739 2.0646 -0.0010 25 1 5.4339 -4.6137 -0.3361 26 1 6.4895 -3.9635 -1.6133 27 1 6.9883 -3.8595 0.0921 28 1 9.1460 -2.2349 -0.0680 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326799036.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:12 Heat of formation + Delta-G solvation = 14.623669 kcal Electronic energy + Delta-G solvation = -14844.881566 eV Core-core repulsion = 12282.340581 eV Total energy + Delta-G solvation = -2562.540985 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.07408 -40.01775 -36.88191 -35.31250 -33.52341 -33.35865 -29.64644 -28.45563 -27.09551 -25.06696 -23.86750 -21.40222 -19.75171 -18.59380 -17.79640 -16.79047 -16.48444 -16.21978 -16.17489 -15.45688 -15.36185 -14.54597 -14.09024 -13.97433 -13.60926 -13.17297 -13.12335 -13.00435 -12.74590 -12.45446 -12.05502 -11.79407 -11.48326 -11.09756 -10.62531 -10.33298 -10.02911 -9.65707 -8.19125 -5.96525 -0.34188 0.27638 1.46617 1.47677 1.61345 1.87078 2.20809 2.49259 2.92614 3.10334 3.41820 3.57902 3.69093 4.13766 4.24740 4.46923 4.66217 4.75749 4.78313 4.88372 4.90729 5.12477 5.36667 5.52259 5.67881 5.83118 6.19934 6.46137 7.02168 7.18610 7.45541 7.83123 8.74818 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.031422 B = 0.010882 C = 0.008252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.886597 B = 2572.516897 C = 3392.464347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.140 3.860 3 C -0.199 4.199 4 C 0.116 3.884 5 N -0.486 5.486 6 C 0.286 3.714 7 C 0.490 3.510 8 O -0.624 6.624 9 N -0.422 5.422 10 C 0.097 3.903 11 C -0.322 4.322 12 H 0.116 0.884 13 C -0.006 4.006 14 N -0.903 5.903 15 Si 1.001 2.999 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.257 1.257 19 N -0.521 5.521 20 H 0.098 0.902 21 H 0.068 0.932 22 H 0.117 0.883 23 H 0.200 0.800 24 H 0.205 0.795 25 H 0.043 0.957 26 H 0.047 0.953 27 H 0.094 0.906 28 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.412 12.054 -1.601 14.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.007 4.007 3 C -0.221 4.221 4 C -0.049 4.049 5 N -0.203 5.203 6 C 0.018 3.982 7 C 0.278 3.722 8 O -0.512 6.512 9 N -0.138 5.138 10 C -0.046 4.046 11 C -0.450 4.450 12 H 0.133 0.867 13 C -0.206 4.206 14 N -0.543 5.543 15 Si 0.824 3.176 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.181 1.181 19 N -0.238 5.238 20 H 0.116 0.884 21 H 0.087 0.913 22 H 0.136 0.864 23 H 0.217 0.783 24 H 0.222 0.778 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.112 0.888 28 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.952 10.584 -1.369 13.309 hybrid contribution 0.373 0.799 -0.077 0.885 sum -7.579 11.384 -1.446 13.752 Atomic orbital electron populations 1.20879 0.84666 1.05057 1.04753 1.22660 0.99665 0.87807 0.90532 1.23372 0.95937 1.01380 1.01426 1.24252 0.93668 0.96553 0.90406 1.69149 1.40586 0.99019 1.11536 1.22461 0.87166 0.93104 0.95510 1.17863 0.83916 0.86553 0.83900 1.90564 1.69664 1.37375 1.53582 1.43662 1.10773 1.08568 1.50780 1.21870 0.97401 0.83260 1.02066 1.20278 0.91668 0.94039 1.39058 0.86711 1.26440 0.97231 1.01694 0.95284 1.69871 1.08800 1.31025 1.44561 0.84817 0.76679 0.77212 0.78912 1.19620 1.20752 1.18125 1.68111 1.08730 1.33021 1.13968 0.88380 0.91304 0.86432 0.78317 0.77802 0.93809 0.93390 0.88835 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.87 10.22 71.24 0.73 -1.14 15 2 C 0.14 4.26 6.82 42.66 0.29 4.55 15 3 C -0.20 -4.75 9.87 22.54 0.22 -4.53 15 4 C 0.12 3.48 11.30 84.78 0.96 4.44 15 5 N -0.49 -21.12 6.74 -189.17 -1.27 -22.39 15 6 C 0.29 14.08 7.27 137.56 1.00 15.08 15 7 C 0.49 28.10 7.61 86.93 0.66 28.76 15 8 O -0.62 -38.54 16.32 -3.85 -0.06 -38.61 15 9 N -0.42 -23.90 2.99 -661.73 -1.98 -25.88 15 10 C 0.10 5.17 9.43 127.77 1.20 6.37 15 11 C -0.32 -17.40 7.98 84.16 0.67 -16.73 15 12 H 0.12 6.01 5.68 -2.91 -0.02 5.99 15 13 C -0.01 -0.29 5.43 85.00 0.46 0.18 15 14 N -0.90 -48.86 10.36 21.70 0.22 -48.63 15 15 Si 1.00 40.48 29.56 68.60 2.03 42.50 15 16 H -0.27 -10.69 7.11 99.48 0.71 -9.99 15 17 H -0.28 -11.15 7.11 99.48 0.71 -10.44 15 18 H -0.26 -9.77 7.11 99.48 0.71 -9.07 15 19 N -0.52 -22.82 10.15 -177.33 -1.80 -24.62 15 20 H 0.10 1.60 8.14 -2.39 -0.02 1.58 15 21 H 0.07 1.53 8.14 -2.39 -0.02 1.51 15 22 H 0.12 1.32 8.10 -2.38 -0.02 1.30 15 23 H 0.20 2.35 8.06 -2.91 -0.02 2.33 15 24 H 0.21 4.22 8.06 -2.91 -0.02 4.20 15 25 H 0.04 2.29 6.95 -2.39 -0.02 2.28 15 26 H 0.05 2.44 8.14 -2.39 -0.02 2.42 15 27 H 0.09 5.21 5.90 -2.39 -0.01 5.20 15 28 H 0.27 13.76 8.31 -92.70 -0.77 12.99 15 Total: -1.00 -74.86 248.83 4.51 -70.35 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 1.18 Total: 10.30 kcal Atomic # 6 Polarization: 30.78 SS G_CDS: 6.20 Total: 36.98 kcal Atomic # 7 Polarization: -116.70 SS G_CDS: -4.83 Total: -121.53 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -0.06 Total: -38.61 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.50 kcal Total: -74.86 4.51 -70.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326799036.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.973 kcal (2) G-P(sol) polarization free energy of solvation -74.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds