Wall clock time and date at job start Mon Mar 30 2020 02:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30663 * 1 3 3 Si 1.86801 * 120.00198 * 2 1 4 4 H 1.48501 * 109.47316 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47396 * 300.00161 * 3 2 1 6 6 H 1.48506 * 109.47165 * 60.00032 * 3 2 1 7 7 C 1.40053 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99736 * 179.97438 * 7 2 1 9 9 C 1.46377 * 119.99922 * 0.02562 * 7 2 1 10 10 O 1.21685 * 119.99478 * 359.97438 * 9 7 2 11 11 N 1.34771 * 119.99832 * 180.02562 * 9 7 2 12 12 C 1.46495 * 119.99849 * 179.97438 * 11 9 7 13 13 H 1.09003 * 110.52559 * 327.56358 * 12 11 9 14 14 C 1.54555 * 110.46870 * 204.99953 * 12 11 9 15 15 C 1.54365 * 102.02625 * 266.64150 * 14 12 11 16 16 N 1.46976 * 105.67977 * 334.08582 * 15 14 12 17 17 C 1.35331 * 142.23363 * 196.80016 * 16 15 14 18 18 N 1.30451 * 108.72370 * 180.19404 * 17 16 15 19 19 C 1.34116 * 109.25777 * 0.18888 * 18 17 16 20 20 C 1.34671 * 107.94729 * 359.82780 * 19 18 17 21 21 H 0.97004 * 120.00076 * 359.97438 * 1 2 3 22 22 H 0.97000 * 120.00335 * 359.97438 * 11 9 7 23 23 H 1.09003 * 110.91906 * 148.45984 * 14 12 11 24 24 H 1.08993 * 110.95150 * 24.83676 * 14 12 11 25 25 H 1.09005 * 110.20781 * 215.03759 * 15 14 12 26 26 H 1.08996 * 110.27749 * 93.17774 * 15 14 12 27 27 H 1.07991 * 125.63906 * 0.16382 * 17 16 15 28 28 H 1.07999 * 126.02978 * 179.82879 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7007 1.3464 0.0006 5 1 1.8820 2.3965 -1.2124 6 1 1.8820 2.3965 1.2125 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2128 -0.0010 9 6 1.2750 -2.4806 -0.0017 10 8 0.0582 -2.4804 -0.0017 11 7 1.9489 -3.6477 -0.0017 12 6 1.2164 -4.9164 -0.0022 13 1 0.2790 -4.8167 0.5450 14 6 2.0824 -6.0407 0.6098 15 6 2.7491 -6.6506 -0.6418 16 7 1.8367 -6.3634 -1.7577 17 6 1.5527 -6.7303 -3.0290 18 7 0.5498 -6.0143 -3.4573 19 6 0.1631 -5.1708 -2.4891 20 6 0.9552 -5.3756 -1.4194 21 1 -0.4850 0.8401 0.0004 22 1 2.9189 -3.6477 -0.0013 23 1 1.4608 -6.7779 1.1179 24 1 2.8304 -5.6309 1.2885 25 1 2.8664 -7.7274 -0.5190 26 1 3.7184 -6.1846 -0.8185 27 1 2.0709 -7.4898 -3.5954 28 1 -0.6417 -4.4536 -2.5554 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329683037.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:33 Heat of formation + Delta-G solvation = 34.991388 kcal Electronic energy + Delta-G solvation = -14761.023823 eV Core-core repulsion = 12199.366049 eV Total energy + Delta-G solvation = -2561.657774 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.03718 -37.62401 -35.84664 -32.86314 -32.14312 -29.82046 -28.83854 -26.63649 -25.21506 -21.84064 -20.76462 -20.23592 -19.33380 -17.37674 -16.57451 -15.89399 -15.25303 -14.26577 -14.13610 -13.84980 -13.65085 -13.06706 -12.75524 -12.50757 -12.36179 -11.81969 -11.59220 -11.14638 -11.03036 -10.93047 -10.48325 -10.21029 -9.67260 -9.18298 -8.88450 -8.06884 -7.65829 -7.58362 -6.20578 -4.66805 2.44778 3.06006 3.12387 3.20674 3.24675 3.58187 4.09754 4.34122 4.53545 4.71058 4.83473 4.98320 5.04602 5.22496 5.32322 5.70117 5.76140 5.78353 6.03525 6.29395 6.38090 6.69606 7.18161 7.41364 7.63389 7.83258 7.99397 8.27791 8.46058 9.00437 9.45092 10.56799 10.74795 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.042487 B = 0.007714 C = 0.007282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.860178 B = 3628.765389 C = 3844.203753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.544 4.544 8 H 0.067 0.933 9 C 0.556 3.444 10 O -0.573 6.573 11 N -0.753 5.753 12 C 0.217 3.783 13 H 0.102 0.898 14 C -0.139 4.139 15 C 0.108 3.892 16 N -0.485 5.485 17 C 0.184 3.816 18 N -0.492 5.492 19 C -0.001 4.001 20 C -0.030 4.030 21 H 0.268 0.732 22 H 0.379 0.621 23 H 0.088 0.912 24 H 0.099 0.901 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.197 0.803 28 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.175 -11.008 0.902 13.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.581 4.581 8 H 0.085 0.915 9 C 0.360 3.640 10 O -0.455 6.455 11 N -0.407 5.407 12 C 0.108 3.892 13 H 0.119 0.881 14 C -0.177 4.177 15 C -0.014 4.014 16 N -0.172 5.172 17 C -0.096 4.096 18 N -0.210 5.210 19 C -0.148 4.148 20 C -0.147 4.147 21 H 0.079 0.921 22 H 0.211 0.789 23 H 0.107 0.893 24 H 0.118 0.882 25 H 0.103 0.897 26 H 0.102 0.898 27 H 0.214 0.786 28 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 5.904 -11.109 0.121 12.581 hybrid contribution 1.413 0.789 0.573 1.717 sum 7.317 -10.321 0.694 12.670 Atomic orbital electron populations 1.70016 1.07022 1.27239 1.35093 1.25690 0.94620 1.00258 0.92607 0.86325 0.80437 0.81796 0.78243 1.18845 1.20126 1.20150 1.20883 0.93543 0.89284 1.54389 0.91486 1.18254 0.87311 0.82250 0.76174 1.90607 1.13925 1.86474 1.54501 1.46244 1.08231 1.04010 1.82221 1.19359 0.97014 0.84787 0.88021 0.88052 1.23030 1.00265 0.98288 0.96151 1.22277 0.92977 1.01502 0.84634 1.46783 1.27351 1.30851 1.12217 1.24483 0.98839 1.03651 0.82646 1.70368 1.12171 1.08700 1.29781 1.21551 1.02902 1.01606 0.88735 1.23271 0.96207 0.95298 0.99916 0.92088 0.78887 0.89327 0.88226 0.89680 0.89757 0.78635 0.81454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.77 11.83 55.55 0.66 -22.11 15 2 C 0.09 2.44 5.50 -17.37 -0.10 2.35 15 3 Si 0.91 20.04 29.56 -169.99 -5.02 15.01 15 4 H -0.26 -5.63 7.11 56.52 0.40 -5.23 15 5 H -0.28 -6.03 7.11 56.52 0.40 -5.62 15 6 H -0.28 -5.95 7.11 56.52 0.40 -5.55 15 7 C -0.54 -15.16 9.54 -35.63 -0.34 -15.50 15 8 H 0.07 1.72 7.85 -52.49 -0.41 1.30 15 9 C 0.56 15.42 7.75 -12.99 -0.10 15.32 15 10 O -0.57 -18.08 14.67 5.20 0.08 -18.01 15 11 N -0.75 -16.12 5.09 -55.29 -0.28 -16.40 15 12 C 0.22 4.00 3.27 -68.00 -0.22 3.78 15 13 H 0.10 2.10 7.56 -51.93 -0.39 1.71 15 14 C -0.14 -1.68 6.75 -25.20 -0.17 -1.85 15 15 C 0.11 1.20 7.77 -3.07 -0.02 1.18 15 16 N -0.49 -7.54 3.61 -112.63 -0.41 -7.95 15 17 C 0.18 2.90 13.05 -90.15 -1.18 1.72 15 18 N -0.49 -9.60 11.25 -14.61 -0.16 -9.76 15 19 C 0.00 -0.01 11.87 -17.82 -0.21 -0.23 15 20 C -0.03 -0.59 7.15 -81.45 -0.58 -1.17 15 21 H 0.27 7.24 8.29 -40.82 -0.34 6.90 15 22 H 0.38 7.10 8.62 -40.82 -0.35 6.75 15 23 H 0.09 0.92 8.14 -51.93 -0.42 0.50 15 24 H 0.10 1.05 8.07 -51.93 -0.42 0.63 15 25 H 0.08 0.70 8.14 -51.93 -0.42 0.27 15 26 H 0.08 0.85 8.14 -51.93 -0.42 0.43 15 27 H 0.20 2.17 8.06 -52.49 -0.42 1.75 15 28 H 0.17 3.70 8.06 -52.49 -0.42 3.27 15 LS Contribution 250.89 15.07 3.78 3.78 Total: -1.00 -35.62 250.89 -7.11 -42.73 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -2.82 Total: 7.10 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: -2.92 Total: 5.60 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: -0.20 Total: -56.22 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: 0.08 Total: -18.01 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -35.62 -7.11 -42.73 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329683037.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.719 kcal (2) G-P(sol) polarization free energy of solvation -35.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds