Wall clock time and date at job start Mon Mar 30 2020 02:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86801 * 119.99960 * 2 1 4 4 H 1.48505 * 109.47195 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.46919 * 120.00184 * 3 2 1 6 6 H 1.48499 * 109.47272 * 240.00155 * 3 2 1 7 7 C 1.40042 * 119.99961 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00378 * 4.67208 * 7 2 1 9 9 C 1.46373 * 119.99893 * 184.67122 * 7 2 1 10 10 O 1.21686 * 120.00338 * 6.24667 * 9 7 2 11 11 N 1.34777 * 120.00175 * 186.24280 * 9 7 2 12 12 C 1.46503 * 120.00527 * 179.97438 * 11 9 7 13 13 H 1.09005 * 110.41210 * 34.30019 * 12 11 9 14 14 C 1.54543 * 110.46747 * 156.79450 * 12 11 9 15 15 C 1.54569 * 101.93340 * 143.96355 * 14 12 11 16 16 N 1.46967 * 105.73667 * 334.23891 * 15 14 12 17 17 C 1.35335 * 142.23139 * 196.94349 * 16 15 14 18 18 N 1.30451 * 108.72443 * 180.28226 * 17 16 15 19 19 C 1.34112 * 109.25591 * 359.92772 * 18 17 16 20 20 C 1.34668 * 107.95055 * 359.93910 * 19 18 17 21 21 H 0.96998 * 120.00557 * 174.89346 * 1 2 3 22 22 H 0.97004 * 120.00076 * 0.02562 * 11 9 7 23 23 H 1.09006 * 110.92058 * 262.22270 * 14 12 11 24 24 H 1.08996 * 110.92331 * 25.86120 * 14 12 11 25 25 H 1.09003 * 110.25652 * 215.12243 * 15 14 12 26 26 H 1.09002 * 110.16973 * 93.30664 * 15 14 12 27 27 H 1.08000 * 125.63515 * 0.30885 * 17 16 15 28 28 H 1.07999 * 126.02665 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 1.2757 2.7465 0.0006 5 1 3.0945 1.6964 1.2125 6 1 3.0944 1.6965 -1.2125 7 6 2.0069 -1.2128 -0.0005 8 1 1.4697 -2.1466 -0.0771 9 6 3.4670 -1.2149 0.1027 10 8 4.0644 -0.1739 0.3030 11 7 4.1499 -2.3700 -0.0240 12 6 5.6113 -2.3721 0.0787 13 1 5.9429 -1.6242 0.7990 14 6 6.1227 -3.7739 0.4809 15 6 7.4396 -3.8762 -0.3219 16 7 7.2708 -2.9866 -1.4795 17 6 7.7834 -2.7123 -2.7016 18 7 7.1102 -1.7257 -3.2263 19 6 6.1531 -1.3387 -2.3702 20 6 6.2369 -2.1170 -1.2744 21 1 -0.4851 -0.8366 -0.0748 22 1 3.6738 -3.1999 -0.1840 23 1 6.3131 -3.8260 1.5530 24 1 5.4192 -4.5478 0.1740 25 1 7.5997 -4.9016 -0.6552 26 1 8.2790 -3.5440 0.2890 27 1 8.6125 -3.2255 -3.1659 28 1 5.4403 -0.5435 -2.5314 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329683038.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:36 Heat of formation + Delta-G solvation = 20.028205 kcal Electronic energy + Delta-G solvation = -14823.763706 eV Core-core repulsion = 12261.457080 eV Total energy + Delta-G solvation = -2562.306626 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.18059 -38.06491 -36.20312 -33.19164 -32.78024 -29.98926 -28.96151 -26.72436 -25.11884 -22.03206 -20.86922 -20.38173 -19.37310 -18.06948 -16.92297 -16.25678 -15.26481 -14.63548 -13.95883 -13.85649 -13.64836 -13.38334 -12.91662 -12.77346 -12.61389 -12.22580 -12.08243 -11.84630 -11.19657 -10.41309 -10.21313 -9.79836 -9.32132 -9.21784 -8.96842 -8.21257 -8.01566 -7.89686 -6.99679 -4.94652 2.30817 2.89691 3.45910 3.59838 3.71316 4.04542 4.15387 4.30630 4.42289 4.59154 4.74643 4.85826 4.87058 5.08477 5.15133 5.46582 5.50301 5.59425 5.78491 6.07783 6.25440 6.53242 7.04052 7.42628 7.50026 7.58630 7.73334 8.07615 8.33460 8.82548 8.99476 10.02035 10.32979 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.041083 B = 0.008810 C = 0.007952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.376069 B = 3177.331256 C = 3520.214071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.062 3.938 3 Si 1.128 2.872 4 H -0.323 1.323 5 H -0.281 1.281 6 H -0.289 1.289 7 C -0.596 4.596 8 H 0.069 0.931 9 C 0.553 3.447 10 O -0.613 6.613 11 N -0.742 5.742 12 C 0.218 3.782 13 H 0.104 0.896 14 C -0.138 4.138 15 C 0.110 3.890 16 N -0.488 5.488 17 C 0.187 3.813 18 N -0.490 5.490 19 C 0.003 3.997 20 C -0.036 4.036 21 H 0.277 0.723 22 H 0.389 0.611 23 H 0.099 0.901 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.199 0.801 28 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.723 -9.935 0.448 16.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.156 4.156 3 Si 0.961 3.039 4 H -0.254 1.254 5 H -0.208 1.208 6 H -0.216 1.216 7 C -0.632 4.632 8 H 0.088 0.912 9 C 0.362 3.638 10 O -0.505 6.505 11 N -0.393 5.393 12 C 0.109 3.891 13 H 0.121 0.879 14 C -0.176 4.176 15 C -0.012 4.012 16 N -0.175 5.175 17 C -0.093 4.093 18 N -0.208 5.208 19 C -0.144 4.144 20 C -0.152 4.152 21 H 0.088 0.912 22 H 0.222 0.778 23 H 0.117 0.883 24 H 0.105 0.895 25 H 0.106 0.894 26 H 0.105 0.895 27 H 0.216 0.784 28 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 13.192 -7.514 -0.106 15.182 hybrid contribution -0.163 -2.837 0.479 2.882 sum 13.029 -10.351 0.373 16.645 Atomic orbital electron populations 1.70655 1.07632 1.32003 1.35685 1.27161 0.95294 1.04979 0.88172 0.82403 0.71464 0.70744 0.79286 1.25441 1.20783 1.21583 1.22025 0.89813 0.96337 1.55065 0.91232 1.18477 0.88636 0.81284 0.75431 1.90165 1.70549 1.31042 1.58777 1.45777 1.03187 1.11297 1.79033 1.19550 0.83466 0.95676 0.90407 0.87875 1.23072 0.95471 0.97969 1.01104 1.22289 0.99538 0.94128 0.85253 1.46746 1.27364 1.28794 1.14604 1.24545 1.02649 0.99226 0.82862 1.70393 1.08094 1.12057 1.30294 1.21551 1.00044 1.02543 0.90221 1.23173 0.94809 0.96842 1.00364 0.91204 0.77821 0.88277 0.89495 0.89449 0.89486 0.78433 0.81455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.04 13.64 55.55 0.76 -23.28 15 2 C 0.06 1.77 5.52 -17.37 -0.10 1.68 15 3 Si 1.13 29.96 25.99 -169.99 -4.42 25.55 15 4 H -0.32 -8.28 7.11 56.52 0.40 -7.88 15 5 H -0.28 -7.63 6.78 56.52 0.38 -7.25 15 6 H -0.29 -7.72 7.11 56.52 0.40 -7.32 15 7 C -0.60 -16.62 9.96 -35.64 -0.36 -16.97 15 8 H 0.07 1.91 8.05 -52.49 -0.42 1.49 15 9 C 0.55 14.31 7.57 -12.99 -0.10 14.21 15 10 O -0.61 -17.23 11.75 5.20 0.06 -17.17 15 11 N -0.74 -15.08 5.14 -55.29 -0.28 -15.36 15 12 C 0.22 3.73 3.23 -68.00 -0.22 3.51 15 13 H 0.10 1.94 7.61 -51.93 -0.40 1.54 15 14 C -0.14 -1.52 6.85 -25.10 -0.17 -1.70 15 15 C 0.11 1.08 7.77 -2.96 -0.02 1.06 15 16 N -0.49 -7.03 3.61 -112.52 -0.41 -7.44 15 17 C 0.19 2.76 13.05 -90.15 -1.18 1.58 15 18 N -0.49 -9.18 11.25 -14.61 -0.16 -9.34 15 19 C 0.00 0.07 11.87 -17.82 -0.21 -0.14 15 20 C -0.04 -0.65 7.15 -81.45 -0.58 -1.24 15 21 H 0.28 7.67 8.72 -40.82 -0.36 7.32 15 22 H 0.39 7.05 8.38 -40.82 -0.34 6.71 15 23 H 0.10 0.88 8.14 -51.93 -0.42 0.46 15 24 H 0.09 0.90 7.81 -51.93 -0.41 0.49 15 25 H 0.09 0.63 8.14 -51.93 -0.42 0.21 15 26 H 0.09 0.70 8.14 -51.93 -0.42 0.28 15 27 H 0.20 1.99 8.06 -52.49 -0.42 1.56 15 28 H 0.17 3.68 8.06 -52.49 -0.42 3.25 15 LS Contribution 246.46 15.07 3.71 3.71 Total: -1.00 -33.95 246.46 -6.52 -40.47 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -2.85 Total: 0.86 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -2.93 Total: 1.99 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -0.10 Total: -55.42 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: 0.06 Total: -17.17 kcal Atomic # 14 Polarization: 29.96 SS G_CDS: -4.42 Total: 25.55 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -33.95 -6.52 -40.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329683038.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.501 kcal (2) G-P(sol) polarization free energy of solvation -33.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds