Wall clock time and date at job start Mon Mar 30 2020 02:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86796 * 120.00297 * 2 1 4 4 H 1.48494 * 109.47534 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46865 * 300.00134 * 3 2 1 6 6 H 1.48499 * 109.46963 * 60.00041 * 3 2 1 7 7 C 1.40055 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99935 * 180.02562 * 7 2 1 9 9 C 1.46369 * 119.99980 * 359.97438 * 7 2 1 10 10 O 1.21687 * 120.00428 * 0.02562 * 9 7 2 11 11 N 1.34778 * 119.99693 * 179.97438 * 9 7 2 12 12 C 1.46507 * 119.99582 * 180.02562 * 11 9 7 13 13 H 1.08994 * 110.84495 * 31.32476 * 12 11 9 14 14 C 1.54551 * 110.92239 * 267.64145 * 12 11 9 15 15 C 1.51242 * 104.29461 * 216.48159 * 14 12 11 16 16 C 1.34667 * 143.08682 * 196.57572 * 15 14 12 17 17 N 1.34120 * 107.94412 * 179.84469 * 16 15 14 18 18 C 1.30451 * 109.25644 * 0.06398 * 17 16 15 19 19 N 1.35334 * 108.72302 * 0.07728 * 18 17 16 20 20 C 1.46976 * 142.23304 * 179.73840 * 19 18 17 21 21 H 0.96999 * 120.00000 * 359.97438 * 1 2 3 22 22 H 0.96994 * 120.00113 * 0.02562 * 11 9 7 23 23 H 1.09008 * 110.46701 * 335.18260 * 14 12 11 24 24 H 1.08996 * 110.46652 * 97.64314 * 14 12 11 25 25 H 1.07994 * 126.03234 * 359.84795 * 16 15 14 26 26 H 1.08000 * 125.63972 * 180.12078 * 18 17 16 27 27 H 1.09002 * 110.20750 * 43.88706 * 20 19 18 28 28 H 1.08996 * 110.20563 * 281.99063 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7007 1.3463 -0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8820 2.3963 1.2125 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2130 -0.0001 9 6 1.2750 -2.4805 -0.0005 10 8 0.0581 -2.4805 -0.0005 11 7 1.9489 -3.6477 -0.0016 12 6 1.2163 -4.9165 -0.0022 13 1 0.2686 -4.8169 -0.5313 14 6 0.9923 -5.4251 1.4400 15 6 1.1266 -6.9276 1.3311 16 6 0.8624 -8.0815 1.9730 17 7 1.3001 -9.0908 1.2058 18 6 1.8259 -8.6053 0.1152 19 7 1.7399 -7.2553 0.1550 20 6 2.0723 -6.0468 -0.6126 21 1 -0.4850 0.8400 0.0004 22 1 2.9189 -3.6477 -0.0020 23 1 1.7529 -5.0219 2.1088 24 1 -0.0038 -5.1537 1.7894 25 1 0.3825 -8.1775 2.9358 26 1 2.2578 -9.1850 -0.6873 27 1 1.8178 -6.1862 -1.6633 28 1 3.1321 -5.8145 -0.5088 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348060508.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:39 Heat of formation + Delta-G solvation = 31.947216 kcal Electronic energy + Delta-G solvation = -14432.914331 eV Core-core repulsion = 11871.124552 eV Total energy + Delta-G solvation = -2561.789779 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.25696 -37.91783 -35.81004 -32.83495 -32.16770 -30.73583 -28.31087 -26.41842 -26.06332 -21.77333 -21.02632 -19.99337 -19.66867 -17.49538 -16.65877 -16.08623 -15.41482 -14.49655 -14.20246 -13.70080 -13.54348 -13.12108 -12.94679 -12.61316 -12.49108 -12.34109 -11.40634 -11.24300 -11.09175 -11.02490 -10.60768 -10.30885 -9.94897 -9.35883 -8.98074 -8.15421 -7.85334 -7.78163 -6.31928 -4.78493 2.22695 2.87178 3.05920 3.14841 3.18734 3.28041 3.99750 4.31394 4.50303 4.53411 4.79306 4.86871 5.11102 5.31369 5.33401 5.51662 5.71622 5.82123 6.04024 6.25037 6.35399 6.46492 6.86651 7.31638 7.39017 7.68436 7.84821 8.16335 8.17631 8.89717 9.30157 10.43867 10.61866 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.079399 B = 0.005809 C = 0.005672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.562982 B = 4819.012607 C = 4935.135490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.087 3.913 3 Si 0.910 3.090 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.070 0.930 9 C 0.554 3.446 10 O -0.575 6.575 11 N -0.755 5.755 12 C 0.153 3.847 13 H 0.103 0.897 14 C -0.071 4.071 15 C -0.026 4.026 16 C -0.025 4.025 17 N -0.491 5.491 18 C 0.190 3.810 19 N -0.477 5.477 20 C 0.097 3.903 21 H 0.270 0.730 22 H 0.383 0.617 23 H 0.088 0.912 24 H 0.091 0.909 25 H 0.167 0.833 26 H 0.201 0.799 27 H 0.092 0.908 28 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.466 -8.529 -0.527 10.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.133 4.133 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.580 4.580 8 H 0.088 0.912 9 C 0.359 3.641 10 O -0.458 6.458 11 N -0.411 5.411 12 C 0.045 3.955 13 H 0.120 0.880 14 C -0.111 4.111 15 C -0.143 4.143 16 C -0.172 4.172 17 N -0.209 5.209 18 C -0.090 4.090 19 N -0.162 5.162 20 C -0.026 4.026 21 H 0.080 0.920 22 H 0.216 0.784 23 H 0.107 0.893 24 H 0.109 0.891 25 H 0.184 0.816 26 H 0.217 0.783 27 H 0.110 0.890 28 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 4.438 -9.244 -0.573 10.270 hybrid contribution 1.049 1.503 -0.246 1.849 sum 5.488 -7.741 -0.820 9.524 Atomic orbital electron populations 1.70014 1.07085 1.27443 1.34740 1.25719 0.94659 1.00416 0.92548 0.86283 0.80438 0.81555 0.78314 1.18749 1.20110 1.20075 1.20885 0.93678 0.89103 1.54312 0.91216 1.18294 0.87286 0.82182 0.76344 1.90621 1.13983 1.86460 1.54707 1.46196 1.08503 1.03827 1.82527 1.21390 0.96353 0.84073 0.93701 0.87952 1.21279 1.04307 0.86165 0.99326 1.22797 1.04112 0.97136 0.90244 1.21454 1.07798 0.86469 1.01498 1.70355 1.15844 1.31290 1.03413 1.24567 1.05601 0.78982 0.99872 1.46795 1.44400 1.06663 1.18375 1.22719 1.01232 0.82250 0.96372 0.91965 0.78425 0.89332 0.89083 0.81618 0.78283 0.88976 0.89267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.98 11.83 55.55 0.66 -21.32 15 2 C 0.09 2.31 5.50 -17.36 -0.10 2.22 15 3 Si 0.91 19.25 29.56 -169.99 -5.02 14.22 15 4 H -0.26 -5.37 7.11 56.52 0.40 -4.97 15 5 H -0.28 -5.75 7.11 56.52 0.40 -5.34 15 6 H -0.28 -5.75 7.11 56.52 0.40 -5.35 15 7 C -0.54 -14.41 9.54 -35.63 -0.34 -14.75 15 8 H 0.07 1.69 7.85 -52.49 -0.41 1.27 15 9 C 0.55 14.58 7.75 -12.99 -0.10 14.48 15 10 O -0.58 -17.49 14.66 5.20 0.08 -17.41 15 11 N -0.76 -14.98 5.14 -53.73 -0.28 -15.26 15 12 C 0.15 2.64 3.50 -66.40 -0.23 2.41 15 13 H 0.10 2.02 7.54 -51.93 -0.39 1.63 15 14 C -0.07 -1.17 6.57 -26.80 -0.18 -1.34 15 15 C -0.03 -0.42 7.51 -81.45 -0.61 -1.03 15 16 C -0.03 -0.40 11.87 -17.82 -0.21 -0.61 15 17 N -0.49 -7.84 11.25 -14.61 -0.16 -8.01 15 18 C 0.19 2.61 13.05 -90.15 -1.18 1.43 15 19 N -0.48 -6.86 3.61 -112.63 -0.41 -7.27 15 20 C 0.10 1.28 7.49 -3.07 -0.02 1.26 15 21 H 0.27 7.02 8.29 -40.82 -0.34 6.68 15 22 H 0.38 6.53 8.40 -40.82 -0.34 6.18 15 23 H 0.09 1.45 8.08 -51.92 -0.42 1.03 15 24 H 0.09 1.59 8.14 -51.93 -0.42 1.17 15 25 H 0.17 2.22 8.06 -52.49 -0.42 1.80 15 26 H 0.20 1.91 8.06 -52.49 -0.42 1.49 15 27 H 0.09 1.07 8.14 -51.93 -0.42 0.64 15 28 H 0.09 1.04 7.80 -51.93 -0.40 0.63 15 LS Contribution 250.52 15.07 3.78 3.78 Total: -1.00 -33.21 250.52 -7.13 -40.34 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -2.80 Total: 6.86 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -2.97 Total: 4.07 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: -0.19 Total: -51.85 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: 0.08 Total: -17.41 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.22 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -33.21 -7.13 -40.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348060508.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.284 kcal (2) G-P(sol) polarization free energy of solvation -33.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds