Wall clock time and date at job start Mon Mar 30 2020 02:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86796 * 120.00297 * 2 1 4 4 H 1.48494 * 109.47534 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46865 * 300.00134 * 3 2 1 6 6 H 1.48499 * 109.46963 * 60.00041 * 3 2 1 7 7 C 1.40055 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99935 * 180.02562 * 7 2 1 9 9 C 1.46369 * 119.99980 * 359.97438 * 7 2 1 10 10 O 1.21687 * 120.00428 * 0.02562 * 9 7 2 11 11 N 1.34778 * 119.99693 * 179.97438 * 9 7 2 12 12 C 1.46507 * 119.99582 * 180.02562 * 11 9 7 13 13 H 1.08994 * 110.84495 * 31.32476 * 12 11 9 14 14 C 1.54551 * 110.92239 * 267.64145 * 12 11 9 15 15 C 1.51242 * 104.29461 * 216.48159 * 14 12 11 16 16 C 1.34667 * 143.08682 * 196.57572 * 15 14 12 17 17 N 1.34120 * 107.94412 * 179.84469 * 16 15 14 18 18 C 1.30451 * 109.25644 * 0.06398 * 17 16 15 19 19 N 1.35334 * 108.72302 * 0.07728 * 18 17 16 20 20 C 1.46976 * 142.23304 * 179.73840 * 19 18 17 21 21 H 0.96999 * 120.00000 * 359.97438 * 1 2 3 22 22 H 0.96994 * 120.00113 * 0.02562 * 11 9 7 23 23 H 1.09008 * 110.46701 * 335.18260 * 14 12 11 24 24 H 1.08996 * 110.46652 * 97.64314 * 14 12 11 25 25 H 1.07994 * 126.03234 * 359.84795 * 16 15 14 26 26 H 1.08000 * 125.63972 * 180.12078 * 18 17 16 27 27 H 1.09002 * 110.20750 * 43.88706 * 20 19 18 28 28 H 1.08996 * 110.20563 * 281.99063 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7007 1.3463 -0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8820 2.3963 1.2125 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2130 -0.0001 9 6 1.2750 -2.4805 -0.0005 10 8 0.0581 -2.4805 -0.0005 11 7 1.9489 -3.6477 -0.0016 12 6 1.2163 -4.9165 -0.0022 13 1 0.2686 -4.8169 -0.5313 14 6 0.9923 -5.4251 1.4400 15 6 1.1266 -6.9276 1.3311 16 6 0.8624 -8.0815 1.9730 17 7 1.3001 -9.0908 1.2058 18 6 1.8259 -8.6053 0.1152 19 7 1.7399 -7.2553 0.1550 20 6 2.0723 -6.0468 -0.6126 21 1 -0.4850 0.8400 0.0004 22 1 2.9189 -3.6477 -0.0020 23 1 1.7529 -5.0219 2.1088 24 1 -0.0038 -5.1537 1.7894 25 1 0.3825 -8.1775 2.9358 26 1 2.2578 -9.1850 -0.6873 27 1 1.8178 -6.1862 -1.6633 28 1 3.1321 -5.8145 -0.5088 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348060508.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:38 Heat of formation + Delta-G solvation = 8.732053 kcal Electronic energy + Delta-G solvation = -14433.921016 eV Core-core repulsion = 11871.124552 eV Total energy + Delta-G solvation = -2562.796464 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.42586 -39.67102 -37.38665 -34.71971 -33.91917 -32.04400 -29.77160 -27.98167 -27.54917 -23.33770 -22.15272 -21.55831 -21.07525 -19.32566 -17.90322 -17.52472 -17.18519 -16.07982 -15.78588 -15.15097 -14.97819 -14.38304 -14.34521 -14.17435 -13.95953 -13.75493 -13.09603 -12.90196 -12.68246 -12.59668 -12.45725 -11.97626 -11.16885 -10.95108 -10.50617 -9.89885 -9.63146 -9.33828 -8.30473 -6.86503 1.06731 1.41316 1.42701 1.59575 1.74449 2.12017 2.25182 2.44750 2.96104 3.15546 3.54004 3.75215 3.78975 3.90290 4.07080 4.28348 4.40538 4.47688 4.83864 4.86073 4.94425 5.27266 5.33118 5.66507 5.85526 6.11472 6.23552 6.31977 6.87046 7.03138 7.48422 8.46359 8.65533 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.079399 B = 0.005809 C = 0.005672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 352.562982 B = 4819.012607 C = 4935.135490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.029 3.971 3 Si 0.996 3.004 4 H -0.246 1.246 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.568 4.568 8 H 0.091 0.909 9 C 0.542 3.458 10 O -0.627 6.627 11 N -0.739 5.739 12 C 0.149 3.851 13 H 0.072 0.928 14 C -0.062 4.062 15 C -0.047 4.047 16 C -0.032 4.032 17 N -0.520 5.520 18 C 0.206 3.794 19 N -0.478 5.478 20 C 0.111 3.889 21 H 0.274 0.726 22 H 0.401 0.599 23 H 0.088 0.912 24 H 0.070 0.930 25 H 0.178 0.822 26 H 0.243 0.757 27 H 0.115 0.885 28 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.812 -8.913 -1.197 11.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.186 4.186 3 Si 0.816 3.184 4 H -0.168 1.168 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.605 4.605 8 H 0.109 0.891 9 C 0.347 3.653 10 O -0.514 6.514 11 N -0.394 5.394 12 C 0.041 3.959 13 H 0.090 0.910 14 C -0.103 4.103 15 C -0.163 4.163 16 C -0.178 4.178 17 N -0.238 5.238 18 C -0.075 4.075 19 N -0.163 5.163 20 C -0.011 4.011 21 H 0.084 0.916 22 H 0.236 0.764 23 H 0.107 0.893 24 H 0.088 0.912 25 H 0.196 0.804 26 H 0.259 0.741 27 H 0.134 0.866 28 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 6.835 -9.675 -1.239 11.910 hybrid contribution 0.308 1.502 -0.038 1.533 sum 7.143 -8.173 -1.277 10.929 Atomic orbital electron populations 1.70179 1.09486 1.28931 1.36337 1.26940 0.95479 1.04929 0.91275 0.84986 0.79473 0.75601 0.78351 1.16839 1.19569 1.19678 1.21444 0.94891 0.89779 1.54386 0.89069 1.18580 0.86821 0.84069 0.75872 1.90584 1.16205 1.87659 1.56907 1.45689 1.09234 1.03383 1.81049 1.21361 0.95869 0.84293 0.94393 0.91031 1.21050 1.03145 0.87325 0.98746 1.22604 1.05854 0.96404 0.91473 1.21771 1.07456 0.86462 1.02124 1.70389 1.17244 1.31615 1.04563 1.25433 1.03504 0.78662 0.99876 1.46883 1.44331 1.07225 1.17838 1.22606 1.01529 0.80106 0.96817 0.91573 0.76415 0.89336 0.91162 0.80433 0.74083 0.86641 0.86702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.40 11.83 21.84 0.26 -48.14 15 2 C 0.03 1.55 5.50 85.31 0.47 2.02 15 3 Si 1.00 39.06 29.56 68.60 2.03 41.08 15 4 H -0.25 -8.80 7.11 99.48 0.71 -8.10 15 5 H -0.27 -10.30 7.11 99.48 0.71 -9.59 15 6 H -0.27 -10.40 7.11 99.48 0.71 -9.69 15 7 C -0.57 -30.11 9.54 24.83 0.24 -29.88 15 8 H 0.09 4.27 7.85 -2.91 -0.02 4.24 15 9 C 0.54 29.05 7.75 86.36 0.67 29.72 15 10 O -0.63 -39.70 14.66 -4.31 -0.06 -39.76 15 11 N -0.74 -29.05 5.14 -442.12 -2.27 -31.33 15 12 C 0.15 5.10 3.50 45.98 0.16 5.26 15 13 H 0.07 2.93 7.54 -2.39 -0.02 2.91 15 14 C -0.06 -2.09 6.57 30.55 0.20 -1.89 15 15 C -0.05 -1.45 7.51 41.16 0.31 -1.14 15 16 C -0.03 -0.96 11.87 83.52 0.99 0.03 15 17 N -0.52 -15.55 11.25 -200.14 -2.25 -17.80 15 18 C 0.21 4.98 13.05 180.18 2.35 7.33 15 19 N -0.48 -12.55 3.61 -510.26 -1.84 -14.39 15 20 C 0.11 2.65 7.49 86.75 0.65 3.30 15 21 H 0.27 14.69 8.29 -92.71 -0.77 13.92 15 22 H 0.40 12.96 8.40 -92.71 -0.78 12.18 15 23 H 0.09 2.92 8.08 -2.38 -0.02 2.90 15 24 H 0.07 2.60 8.14 -2.39 -0.02 2.58 15 25 H 0.18 4.67 8.06 -2.91 -0.02 4.65 15 26 H 0.24 3.47 8.06 -2.91 -0.02 3.44 15 27 H 0.12 2.28 8.14 -2.39 -0.02 2.26 15 28 H 0.12 2.22 7.80 -2.39 -0.02 2.20 15 Total: -1.00 -73.97 250.52 2.30 -71.67 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 0.41 Total: 23.90 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: 6.04 Total: 14.76 kcal Atomic # 7 Polarization: -105.55 SS G_CDS: -6.11 Total: -111.66 kcal Atomic # 8 Polarization: -39.70 SS G_CDS: -0.06 Total: -39.76 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 2.03 Total: 41.08 kcal Total: -73.97 2.30 -71.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348060508.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.405 kcal (2) G-P(sol) polarization free energy of solvation -73.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds