Wall clock time and date at job start Mon Mar 30 2020 02:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34705 * 116.99876 * 2 1 4 4 O 1.21470 * 120.00001 * 0.02562 * 3 2 1 5 5 C 1.47720 * 119.99761 * 179.97438 * 3 2 1 6 6 C 1.40079 * 120.56133 * 179.97438 * 5 3 2 7 7 C 1.38344 * 118.28070 * 179.70387 * 6 5 3 8 8 C 1.38356 * 119.31234 * 0.28031 * 7 6 5 9 9 C 1.50703 * 119.45826 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47227 * 125.00073 * 9 8 7 11 11 H 1.07997 * 120.00070 * 359.97438 * 10 9 8 12 12 C 1.37874 * 119.99666 * 179.97438 * 10 9 8 13 13 N 1.31507 * 120.00416 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99605 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47118 * 60.00153 * 14 12 10 16 16 H 1.48503 * 109.46904 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47293 * 300.00205 * 14 12 10 18 18 N 1.31935 * 121.08774 * 359.97438 * 8 7 6 19 19 C 1.31688 * 121.88668 * 359.97438 * 18 8 7 20 20 H 1.09001 * 109.47208 * 60.00071 * 1 2 3 21 21 H 1.09005 * 109.46925 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46831 * 299.99457 * 1 2 3 23 23 H 1.08002 * 120.86232 * 359.97438 * 6 5 3 24 24 H 1.08003 * 120.34490 * 180.25582 * 7 6 5 25 25 H 1.09003 * 109.46542 * 245.00058 * 9 8 7 26 26 H 1.09001 * 109.46836 * 4.99593 * 9 8 7 27 27 H 0.97002 * 120.00493 * 179.97438 * 13 12 10 28 28 H 1.07996 * 119.71627 * 179.97438 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5387 1.2775 0.0006 6 6 4.1869 2.5193 0.0000 7 6 5.5702 2.5367 0.0069 8 6 6.2627 1.3389 0.0081 9 6 7.7696 1.3539 0.0162 10 6 8.2739 0.5416 1.1810 11 1 7.5733 0.0627 1.8490 12 6 9.6297 0.4099 1.3940 13 7 10.4828 0.9926 0.5804 14 14 10.2548 -0.5965 2.8383 15 1 9.7738 -1.9957 2.7118 16 1 11.7397 -0.5827 2.8454 17 1 9.7477 -0.0115 4.1055 18 7 5.6254 0.1836 0.0033 19 6 4.3104 0.1146 -0.0023 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 3.6214 3.4395 -0.0012 24 1 6.1041 3.4755 0.0109 25 1 8.1421 0.9252 -0.9142 26 1 8.1221 2.3811 0.1097 27 1 11.4367 0.9002 0.7304 28 1 3.8250 -0.8501 -0.0065 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535704724.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:54 Heat of formation + Delta-G solvation = -59.055051 kcal Electronic energy + Delta-G solvation = -14010.721867 eV Core-core repulsion = 11412.693182 eV Total energy + Delta-G solvation = -2598.028685 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.56176 -39.30030 -36.42403 -33.65503 -32.12471 -31.62932 -28.68925 -27.22137 -24.30841 -23.29879 -21.98804 -20.55404 -17.97318 -17.10615 -16.41738 -16.33520 -15.74786 -15.22076 -14.42294 -14.24989 -13.75667 -13.16480 -13.07569 -12.74171 -12.21285 -12.17374 -11.67758 -11.47151 -10.87383 -10.78698 -10.69765 -10.61678 -9.93046 -9.55286 -9.50968 -8.82991 -8.56067 -8.34316 -6.08278 -4.09989 0.90332 1.65823 2.68597 2.72655 3.33062 3.36567 3.40625 4.24781 4.45437 4.72189 4.95157 4.99989 5.06015 5.11862 5.26993 5.28577 5.37176 5.44223 5.96202 6.06926 6.25853 6.32428 6.52272 7.06445 7.35287 7.40944 7.75246 7.87874 8.19289 8.58037 8.92635 9.52935 11.02807 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.051698 B = 0.005806 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.481606 B = 4821.815878 C = 5154.420574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.355 6.355 3 C 0.521 3.479 4 O -0.518 6.518 5 C -0.223 4.223 6 C -0.012 4.012 7 C -0.196 4.196 8 C 0.212 3.788 9 C 0.052 3.948 10 C -0.505 4.505 11 H 0.061 0.939 12 C 0.058 3.942 13 N -0.897 5.897 14 Si 0.900 3.100 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.277 1.277 18 N -0.479 5.479 19 C 0.162 3.838 20 H 0.062 0.938 21 H 0.101 0.899 22 H 0.062 0.938 23 H 0.139 0.861 24 H 0.142 0.858 25 H 0.049 0.951 26 H 0.041 0.959 27 H 0.263 0.737 28 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.946 -0.118 -1.574 15.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.272 6.272 3 C 0.367 3.633 4 O -0.407 6.407 5 C -0.227 4.227 6 C -0.038 4.038 7 C -0.216 4.216 8 C 0.077 3.923 9 C 0.015 3.985 10 C -0.543 4.543 11 H 0.079 0.921 12 C -0.144 4.144 13 N -0.536 5.536 14 Si 0.727 3.273 15 H -0.200 1.200 16 H -0.213 1.213 17 H -0.202 1.202 18 N -0.188 5.188 19 C 0.002 3.998 20 H 0.080 0.920 21 H 0.120 0.880 22 H 0.080 0.920 23 H 0.157 0.843 24 H 0.159 0.841 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -14.474 -0.562 -1.606 14.574 hybrid contribution -0.390 0.330 0.783 0.935 sum -14.865 -0.233 -0.823 14.889 Atomic orbital electron populations 1.23248 0.76299 1.03614 1.02459 1.86558 1.23306 1.32827 1.84487 1.21110 0.88915 0.81209 0.72053 1.90793 1.66889 1.36082 1.46981 1.19948 0.89520 0.96636 1.16565 1.21586 0.94491 0.96664 0.91028 1.22124 0.93537 1.00624 1.05363 1.22722 0.99914 0.86799 0.82899 1.18493 0.81638 0.99143 0.99184 1.20910 0.91566 1.31233 1.10607 0.92097 1.24979 0.96790 0.95834 0.96758 1.69926 1.02343 1.43884 1.37404 0.86526 0.77437 0.80805 0.82505 1.20039 1.21256 1.20244 1.67854 1.08232 1.29558 1.13158 1.23270 0.89826 0.97308 0.89382 0.91972 0.88047 0.91953 0.84331 0.84053 0.93281 0.94074 0.92694 0.82159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.56 101.05 1.07 1.41 15 2 O -0.36 -4.64 9.84 -40.51 -0.40 -5.04 15 3 C 0.52 8.01 7.91 34.60 0.27 8.28 15 4 O -0.52 -8.76 16.21 -19.24 -0.31 -9.07 15 5 C -0.22 -3.65 5.89 -104.84 -0.62 -4.27 15 6 C -0.01 -0.20 9.72 -38.85 -0.38 -0.58 15 7 C -0.20 -3.48 9.69 -39.50 -0.38 -3.86 15 8 C 0.21 4.51 6.13 -82.50 -0.51 4.01 15 9 C 0.05 1.30 5.37 -29.03 -0.16 1.15 15 10 C -0.50 -13.95 8.90 -34.44 -0.31 -14.25 15 11 H 0.06 1.70 7.68 -52.49 -0.40 1.29 15 12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 15 13 N -0.90 -25.92 13.29 55.43 0.74 -25.18 15 14 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 15 15 H -0.27 -6.52 7.11 56.52 0.40 -6.12 15 16 H -0.29 -6.74 7.11 56.52 0.40 -6.34 15 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 18 N -0.48 -10.07 9.93 -9.12 -0.09 -10.16 15 19 C 0.16 2.80 10.79 -17.12 -0.18 2.62 15 20 H 0.06 0.55 8.14 -51.93 -0.42 0.13 15 21 H 0.10 0.62 8.14 -51.93 -0.42 0.20 15 22 H 0.06 0.56 8.14 -51.93 -0.42 0.14 15 23 H 0.14 1.95 7.74 -52.49 -0.41 1.54 15 24 H 0.14 2.20 7.94 -52.48 -0.42 1.78 15 25 H 0.05 1.30 8.14 -51.93 -0.42 0.88 15 26 H 0.04 1.02 7.86 -51.93 -0.41 0.61 15 27 H 0.26 7.22 8.31 -40.82 -0.34 6.88 15 28 H 0.16 2.31 7.62 -52.49 -0.40 1.91 15 LS Contribution 260.26 15.07 3.92 3.92 Total: -1.00 -30.94 260.26 -5.31 -36.25 By element: Atomic # 1 Polarization: -0.34 SS G_CDS: -2.86 Total: -3.20 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -1.29 Total: -3.98 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.65 Total: -35.34 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.71 Total: -14.11 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.94 -5.31 -36.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535704724.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.807 kcal (2) G-P(sol) polarization free energy of solvation -30.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds