Wall clock time and date at job start Mon Mar 30 2020 02:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34705 * 116.99876 * 2 1 4 4 O 1.21470 * 120.00001 * 0.02562 * 3 2 1 5 5 C 1.47720 * 119.99761 * 179.97438 * 3 2 1 6 6 C 1.40079 * 120.56133 * 179.97438 * 5 3 2 7 7 C 1.38344 * 118.28070 * 179.70387 * 6 5 3 8 8 C 1.38356 * 119.31234 * 0.28031 * 7 6 5 9 9 C 1.50703 * 119.45826 * 180.02562 * 8 7 6 10 10 C 1.50701 * 109.47227 * 125.00073 * 9 8 7 11 11 H 1.07997 * 120.00070 * 359.97438 * 10 9 8 12 12 C 1.37874 * 119.99666 * 179.97438 * 10 9 8 13 13 N 1.31507 * 120.00416 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99605 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.47118 * 60.00153 * 14 12 10 16 16 H 1.48503 * 109.46904 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47293 * 300.00205 * 14 12 10 18 18 N 1.31935 * 121.08774 * 359.97438 * 8 7 6 19 19 C 1.31688 * 121.88668 * 359.97438 * 18 8 7 20 20 H 1.09001 * 109.47208 * 60.00071 * 1 2 3 21 21 H 1.09005 * 109.46925 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.46831 * 299.99457 * 1 2 3 23 23 H 1.08002 * 120.86232 * 359.97438 * 6 5 3 24 24 H 1.08003 * 120.34490 * 180.25582 * 7 6 5 25 25 H 1.09003 * 109.46542 * 245.00058 * 9 8 7 26 26 H 1.09001 * 109.46836 * 4.99593 * 9 8 7 27 27 H 0.97002 * 120.00493 * 179.97438 * 13 12 10 28 28 H 1.07996 * 119.71627 * 179.97438 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4020 2.2190 0.0005 5 6 3.5387 1.2775 0.0006 6 6 4.1869 2.5193 0.0000 7 6 5.5702 2.5367 0.0069 8 6 6.2627 1.3389 0.0081 9 6 7.7696 1.3539 0.0162 10 6 8.2739 0.5416 1.1810 11 1 7.5733 0.0627 1.8490 12 6 9.6297 0.4099 1.3940 13 7 10.4828 0.9926 0.5804 14 14 10.2548 -0.5965 2.8383 15 1 9.7738 -1.9957 2.7118 16 1 11.7397 -0.5827 2.8454 17 1 9.7477 -0.0115 4.1055 18 7 5.6254 0.1836 0.0033 19 6 4.3104 0.1146 -0.0023 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 3.6214 3.4395 -0.0012 24 1 6.1041 3.4755 0.0109 25 1 8.1421 0.9252 -0.9142 26 1 8.1221 2.3811 0.1097 27 1 11.4367 0.9002 0.7304 28 1 3.8250 -0.8501 -0.0065 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535704724.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:54 Heat of formation + Delta-G solvation = -78.203166 kcal Electronic energy + Delta-G solvation = -14011.552191 eV Core-core repulsion = 11412.693182 eV Total energy + Delta-G solvation = -2598.859009 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.80934 -40.63999 -37.55019 -35.55956 -33.68043 -33.22187 -30.21786 -28.36584 -26.03272 -24.70638 -23.51442 -21.92917 -19.19619 -18.51342 -18.24005 -17.41239 -17.16703 -16.86715 -16.13760 -15.45099 -15.17797 -14.43032 -14.34249 -14.16898 -13.96564 -13.40804 -13.36350 -13.01643 -12.63298 -12.55522 -11.87051 -11.82139 -11.80989 -11.56270 -10.95281 -10.62069 -10.28425 -9.95672 -8.20313 -6.29188 -0.47440 0.29713 1.41313 1.44252 1.45736 1.53152 1.63268 2.42140 2.84356 3.13581 3.40584 3.71982 3.83427 3.87857 4.08534 4.32170 4.36730 4.48177 4.72613 4.76929 4.94518 5.02852 5.23986 5.28834 5.44137 5.63240 5.73666 6.14522 6.59839 6.78877 7.09773 7.37692 8.90689 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.051698 B = 0.005806 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.481606 B = 4821.815878 C = 5154.420574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.356 6.356 3 C 0.528 3.472 4 O -0.533 6.533 5 C -0.215 4.215 6 C -0.003 4.003 7 C -0.190 4.190 8 C 0.182 3.818 9 C 0.059 3.941 10 C -0.521 4.521 11 H 0.053 0.947 12 C 0.007 3.993 13 N -0.928 5.928 14 Si 0.963 3.037 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.269 1.269 18 N -0.513 5.513 19 C 0.161 3.839 20 H 0.066 0.934 21 H 0.136 0.864 22 H 0.064 0.936 23 H 0.165 0.835 24 H 0.160 0.840 25 H 0.019 0.981 26 H 0.033 0.967 27 H 0.266 0.734 28 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.822 -0.441 -0.867 16.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.272 6.272 3 C 0.374 3.626 4 O -0.424 6.424 5 C -0.219 4.219 6 C -0.028 4.028 7 C -0.210 4.210 8 C 0.047 3.953 9 C 0.022 3.978 10 C -0.559 4.559 11 H 0.071 0.929 12 C -0.192 4.192 13 N -0.568 5.568 14 Si 0.788 3.212 15 H -0.197 1.197 16 H -0.205 1.205 17 H -0.194 1.194 18 N -0.222 5.222 19 C 0.002 3.998 20 H 0.084 0.916 21 H 0.154 0.846 22 H 0.083 0.917 23 H 0.183 0.817 24 H 0.177 0.823 25 H 0.037 0.963 26 H 0.051 0.949 27 H 0.075 0.925 28 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -16.369 -0.897 -0.901 16.418 hybrid contribution 0.009 0.408 0.524 0.664 sum -16.360 -0.489 -0.378 16.372 Atomic orbital electron populations 1.23640 0.73858 1.06069 1.02820 1.86543 1.25600 1.31321 1.83741 1.20821 0.88307 0.81705 0.71740 1.90793 1.67072 1.36779 1.47747 1.20155 0.90548 0.96478 1.14690 1.21849 0.93762 0.97743 0.89481 1.22180 0.94341 0.99960 1.04479 1.22223 0.98225 0.88509 0.86311 1.18201 0.84759 0.97792 0.97055 1.21206 0.91862 1.31435 1.11402 0.92876 1.25819 0.97024 0.96908 0.99405 1.70034 1.02630 1.45135 1.39030 0.85524 0.77086 0.79195 0.79384 1.19695 1.20484 1.19375 1.67686 1.10218 1.29997 1.14282 1.23591 0.88538 0.98875 0.88843 0.91561 0.84641 0.91687 0.81715 0.82274 0.96257 0.94906 0.92510 0.79613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.56 113.37 1.20 1.64 15 2 O -0.36 -8.24 9.84 -56.15 -0.55 -8.79 15 3 C 0.53 14.82 7.91 70.33 0.56 15.38 15 4 O -0.53 -16.57 16.21 19.93 0.32 -16.25 15 5 C -0.22 -6.59 5.89 -20.00 -0.12 -6.71 15 6 C 0.00 -0.10 9.72 22.74 0.22 0.13 15 7 C -0.19 -6.56 9.69 22.32 0.22 -6.34 15 8 C 0.18 7.86 6.13 42.57 0.26 8.13 15 9 C 0.06 3.06 5.37 29.10 0.16 3.21 15 10 C -0.52 -29.46 8.90 25.60 0.23 -29.24 15 11 H 0.05 3.01 7.68 -2.91 -0.02 2.99 15 12 C 0.01 0.38 5.46 84.66 0.46 0.84 15 13 N -0.93 -54.74 13.29 21.45 0.28 -54.45 15 14 Si 0.96 44.26 29.54 68.60 2.03 46.28 15 15 H -0.27 -12.25 7.11 99.48 0.71 -11.54 15 16 H -0.28 -12.42 7.11 99.48 0.71 -11.71 15 17 H -0.27 -11.91 7.11 99.48 0.71 -11.20 15 18 N -0.51 -21.59 9.93 -182.78 -1.82 -23.40 15 19 C 0.16 5.34 10.79 85.04 0.92 6.26 15 20 H 0.07 0.98 8.14 -2.39 -0.02 0.96 15 21 H 0.14 1.13 8.14 -2.38 -0.02 1.11 15 22 H 0.06 0.98 8.14 -2.39 -0.02 0.96 15 23 H 0.17 4.11 7.74 -2.91 -0.02 4.09 15 24 H 0.16 4.79 7.94 -2.91 -0.02 4.77 15 25 H 0.02 1.09 8.14 -2.39 -0.02 1.07 15 26 H 0.03 1.70 7.86 -2.39 -0.02 1.68 15 27 H 0.27 14.78 8.31 -92.71 -0.77 14.01 15 28 H 0.19 4.99 7.62 -2.91 -0.02 4.97 15 Total: -1.00 -66.71 260.26 5.53 -61.18 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: 1.16 Total: 2.14 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: 4.10 Total: -6.71 kcal Atomic # 7 Polarization: -76.33 SS G_CDS: -1.53 Total: -77.86 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.23 Total: -25.04 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -66.71 5.53 -61.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535704724.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.019 kcal (2) G-P(sol) polarization free energy of solvation -66.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds