Wall clock time and date at job start Mon Mar 30 2020 04:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.35859 * 126.17640 * 2 1 4 4 N 1.30185 * 109.11908 * 180.02562 * 3 2 1 5 5 C 1.35806 * 109.02095 * 0.02562 * 4 3 2 6 6 C 1.46730 * 126.24512 * 179.97438 * 5 4 3 7 7 C 1.35324 * 120.00580 * 6.66800 * 6 5 4 8 8 C 1.41567 * 119.99723 * 23.72659 * 7 6 5 9 9 O 1.21808 * 119.99716 * 7.20256 * 8 7 6 10 10 N 1.34775 * 120.00050 * 186.92500 * 8 7 6 11 11 C 1.36798 * 120.00438 * 180.27884 * 10 8 7 12 12 H 1.07999 * 119.99407 * 359.97438 * 11 10 8 13 13 C 1.39041 * 120.00134 * 180.02562 * 11 10 8 14 14 N 1.31372 * 120.00164 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99819 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47294 * 59.99452 * 15 13 11 17 17 H 1.48505 * 109.46924 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47045 * 299.99167 * 15 13 11 19 19 C 1.36074 * 126.18019 * 180.34610 * 2 1 3 20 20 H 1.08999 * 109.47321 * 89.97183 * 1 2 3 21 21 H 1.09005 * 109.47326 * 209.97524 * 1 2 3 22 22 H 1.09004 * 109.47479 * 329.96675 * 1 2 3 23 23 H 1.08002 * 125.43998 * 359.97438 * 3 2 1 24 24 H 1.08007 * 119.99788 * 186.66121 * 6 5 4 25 25 H 1.08000 * 119.99979 * 203.73097 * 7 6 5 26 26 H 0.97004 * 119.99402 * 0.28205 * 10 8 7 27 27 H 0.97006 * 119.99973 * 180.02562 * 14 13 11 28 28 H 1.07994 * 126.64044 * 0.02562 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2669 1.0967 0.0000 4 7 3.5115 0.7148 -0.0006 5 6 3.5580 -0.6425 -0.0015 6 6 4.7704 -1.4689 -0.0029 7 6 5.9853 -0.8885 0.1328 8 6 6.0997 0.3756 0.7599 9 8 5.1282 0.8809 1.2933 10 7 7.2848 1.0172 0.7716 11 6 7.3968 2.2361 1.3825 12 1 6.5354 2.6843 1.8551 13 6 8.6194 2.8982 1.3941 14 7 9.6671 2.3531 0.8188 15 14 8.7721 4.5629 2.2277 16 1 8.4219 4.4309 3.6648 17 1 10.1681 5.0533 2.1019 18 1 7.8478 5.5277 1.5796 19 6 2.2682 -1.0983 -0.0066 20 1 -0.3634 0.0005 -1.0276 21 1 -0.3634 -0.8902 0.5135 22 1 -0.3634 0.8897 0.5144 23 1 1.9263 2.1216 -0.0004 24 1 4.6932 -2.5407 -0.1121 25 1 6.8675 -1.3895 -0.2375 26 1 8.0584 0.6147 0.3467 27 1 10.5202 2.8150 0.8272 28 1 1.9493 -2.1301 -0.0133 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001542734848.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:28 Heat of formation + Delta-G solvation = 51.989238 kcal Electronic energy + Delta-G solvation = -14363.743000 eV Core-core repulsion = 11802.822308 eV Total energy + Delta-G solvation = -2560.920692 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.56837 -39.93191 -36.10610 -34.92681 -33.43527 -32.98689 -30.09935 -27.80874 -26.84147 -24.18924 -21.88273 -21.67185 -20.04305 -19.17483 -18.17030 -17.17218 -16.42502 -16.25324 -15.82445 -15.41797 -14.96041 -14.61539 -14.36825 -13.81314 -13.72617 -13.36380 -13.33119 -12.94927 -12.79758 -12.35787 -12.09322 -11.45721 -10.90605 -10.47802 -10.30551 -9.86884 -9.39947 -8.59375 -8.39305 -5.78680 0.19501 1.39336 1.39713 1.50600 1.52704 2.12507 2.35429 2.68279 2.89701 3.54990 3.70506 3.88724 4.03501 4.18129 4.41605 4.50621 4.52774 4.76155 4.80807 4.91654 5.37312 5.45330 5.50605 5.65527 6.03146 6.23025 6.48954 6.77339 7.29581 7.51332 7.76013 8.42794 8.79374 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.046238 B = 0.006809 C = 0.006044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.420785 B = 4111.227016 C = 4631.936639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.466 5.466 3 C 0.135 3.865 4 N -0.455 5.455 5 C -0.043 4.043 6 C 0.002 3.998 7 C -0.228 4.228 8 C 0.462 3.538 9 O -0.584 6.584 10 N -0.582 5.582 11 C -0.316 4.316 12 H 0.074 0.926 13 C -0.024 4.024 14 N -0.927 5.927 15 Si 0.995 3.005 16 H -0.272 1.272 17 H -0.269 1.269 18 H -0.273 1.273 19 C -0.006 4.006 20 H 0.091 0.909 21 H 0.104 0.896 22 H 0.095 0.905 23 H 0.212 0.788 24 H 0.181 0.819 25 H 0.140 0.860 26 H 0.390 0.610 27 H 0.275 0.725 28 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.328 -8.265 -3.439 18.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.149 5.149 3 C -0.148 4.148 4 N -0.172 5.172 5 C -0.170 4.170 6 C -0.020 4.020 7 C -0.251 4.251 8 C 0.254 3.746 9 O -0.468 6.468 10 N -0.219 5.219 11 C -0.446 4.446 12 H 0.092 0.908 13 C -0.222 4.222 14 N -0.569 5.569 15 Si 0.819 3.181 16 H -0.198 1.198 17 H -0.193 1.193 18 H -0.199 1.199 19 C -0.143 4.143 20 H 0.109 0.891 21 H 0.122 0.878 22 H 0.114 0.886 23 H 0.228 0.772 24 H 0.199 0.801 25 H 0.157 0.843 26 H 0.223 0.777 27 H 0.085 0.915 28 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -16.250 -7.280 -3.079 18.071 hybrid contribution 0.234 0.386 0.249 0.515 sum -16.017 -6.895 -2.830 17.666 Atomic orbital electron populations 1.22340 0.73949 1.06071 1.04845 1.45770 1.09123 1.05935 1.54044 1.25704 0.85798 0.94707 1.08610 1.71297 1.18997 1.12835 1.14103 1.20105 0.93830 0.90162 1.12867 1.21915 0.88605 0.98671 0.92798 1.22087 0.99887 0.97390 1.05719 1.17613 0.83100 0.87671 0.86250 1.90675 1.36721 1.69424 1.49993 1.41991 1.10705 1.18339 1.50896 1.19597 0.96402 0.96342 1.32267 0.90752 1.26082 0.94242 1.03439 0.98474 1.69677 1.01302 1.40845 1.45040 0.84966 0.77542 0.77207 0.78414 1.19760 1.19338 1.19858 1.23339 0.89645 0.94125 1.07225 0.89060 0.87774 0.88594 0.77191 0.80142 0.84270 0.77739 0.91526 0.76282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.82 11.16 127.77 1.43 2.24 15 2 N -0.47 -11.66 3.15 -550.85 -1.73 -13.39 15 3 C 0.13 4.68 12.55 180.09 2.26 6.94 15 4 N -0.45 -20.87 7.30 -189.03 -1.38 -22.25 15 5 C -0.04 -1.65 6.18 40.41 0.25 -1.40 15 6 C 0.00 0.06 10.07 23.82 0.24 0.30 15 7 C -0.23 -9.69 9.79 22.42 0.22 -9.47 15 8 C 0.46 25.52 7.12 85.06 0.61 26.12 15 9 O -0.58 -35.64 11.84 -4.70 -0.06 -35.70 15 10 N -0.58 -34.06 5.27 -315.17 -1.66 -35.72 15 11 C -0.32 -19.76 9.67 84.11 0.81 -18.95 15 12 H 0.07 4.93 7.15 -2.91 -0.02 4.91 15 13 C -0.02 -1.40 5.50 84.95 0.47 -0.93 15 14 N -0.93 -54.40 13.05 21.68 0.28 -54.12 15 15 Si 1.00 46.40 29.55 68.60 2.03 48.43 15 16 H -0.27 -12.46 7.11 99.48 0.71 -11.75 15 17 H -0.27 -11.70 7.11 99.48 0.71 -10.99 15 18 H -0.27 -12.57 7.11 99.48 0.71 -11.86 15 19 C -0.01 -0.16 11.53 83.70 0.97 0.80 15 20 H 0.09 0.78 8.14 -2.39 -0.02 0.76 15 21 H 0.10 0.78 8.14 -2.38 -0.02 0.76 15 22 H 0.10 0.94 8.14 -2.39 -0.02 0.92 15 23 H 0.21 6.05 8.06 -2.91 -0.02 6.03 15 24 H 0.18 4.04 8.06 -2.91 -0.02 4.01 15 25 H 0.14 4.98 8.06 -2.91 -0.02 4.96 15 26 H 0.39 21.93 7.85 -92.71 -0.73 21.20 15 27 H 0.28 15.07 8.31 -92.70 -0.77 14.30 15 28 H 0.22 3.37 8.06 -2.91 -0.02 3.34 15 Total: -1.00 -85.67 255.02 5.18 -80.49 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: 0.45 Total: 26.60 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 7.25 Total: 5.66 kcal Atomic # 7 Polarization: -120.99 SS G_CDS: -4.49 Total: -125.48 kcal Atomic # 8 Polarization: -35.64 SS G_CDS: -0.06 Total: -35.70 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 2.03 Total: 48.43 kcal Total: -85.67 5.18 -80.49 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542734848.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.484 kcal (2) G-P(sol) polarization free energy of solvation -85.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds