Wall clock time and date at job start Mon Mar 30 2020 04:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35853 * 126.17604 * 2 1 4 4 N 1.30183 * 109.11974 * 180.02562 * 3 2 1 5 5 C 1.35812 * 109.01900 * 359.97438 * 4 3 2 6 6 C 1.46735 * 126.24650 * 179.97438 * 5 4 3 7 7 C 1.35324 * 120.00080 * 359.74201 * 6 5 4 8 8 C 1.41560 * 120.00171 * 180.27805 * 7 6 5 9 9 O 1.21813 * 120.00206 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00174 * 179.97438 * 8 7 6 11 11 C 1.36806 * 120.00129 * 180.02562 * 10 8 7 12 12 H 1.08001 * 119.99624 * 359.97438 * 11 10 8 13 13 C 1.39045 * 120.00341 * 180.02562 * 11 10 8 14 14 N 1.31374 * 119.99854 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00035 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47341 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46856 * 120.00585 * 15 13 11 18 18 H 1.48498 * 109.47206 * 240.00057 * 15 13 11 19 19 C 1.36079 * 126.17632 * 180.30891 * 2 1 3 20 20 H 1.08996 * 109.46971 * 89.97968 * 1 2 3 21 21 H 1.09004 * 109.46969 * 209.97771 * 1 2 3 22 22 H 1.08999 * 109.47272 * 329.97660 * 1 2 3 23 23 H 1.07999 * 125.44066 * 0.04887 * 3 2 1 24 24 H 1.08002 * 120.00144 * 180.02562 * 6 5 4 25 25 H 1.08001 * 120.00250 * 0.27688 * 7 6 5 26 26 H 0.97000 * 120.00317 * 0.02562 * 10 8 7 27 27 H 0.96996 * 120.00306 * 179.97438 * 14 13 11 28 28 H 1.08000 * 126.64537 * 359.96414 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2669 1.0966 0.0000 4 7 3.5115 0.7148 -0.0006 5 6 3.5580 -0.6425 -0.0004 6 6 4.7704 -1.4691 -0.0013 7 6 5.9896 -0.8819 -0.0079 8 6 7.1593 -1.6793 -0.0148 9 8 7.0683 -2.8941 -0.0153 10 7 8.3735 -1.0945 -0.0218 11 6 9.5039 -1.8652 -0.0290 12 1 9.4231 -2.9421 -0.0286 13 6 10.7566 -1.2619 -0.0357 14 7 10.8548 0.0482 -0.0346 15 14 12.2999 -2.3142 -0.0448 16 1 11.9203 -3.7498 -0.0440 17 1 13.0965 -2.0139 -1.2616 18 1 13.1100 -2.0152 1.1633 19 6 2.2683 -1.0984 -0.0059 20 1 -0.3633 0.0004 -1.0276 21 1 -0.3633 -0.8902 0.5135 22 1 -0.3634 0.8898 0.5142 23 1 1.9263 2.1215 0.0008 24 1 4.6898 -2.5461 -0.0015 25 1 6.0704 0.1951 -0.0078 26 1 8.4461 -0.1272 -0.0217 27 1 11.7287 0.4691 -0.0389 28 1 1.9493 -2.1302 -0.0109 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001542734849.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:36 Heat of formation + Delta-G solvation = 40.155885 kcal Electronic energy + Delta-G solvation = -13700.683583 eV Core-core repulsion = 11139.249758 eV Total energy + Delta-G solvation = -2561.433825 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.78127 -38.18513 -34.57390 -33.90359 -32.05025 -31.18311 -29.17421 -27.04008 -25.22231 -22.84924 -21.16260 -19.96196 -18.37996 -17.62777 -16.94643 -15.94299 -15.70537 -14.67719 -14.26286 -14.12460 -13.60224 -13.34047 -13.04725 -13.01562 -12.90097 -12.46028 -11.50847 -11.12529 -11.11426 -10.32151 -10.21851 -10.03464 -9.88766 -9.52800 -9.22102 -8.30784 -7.95219 -7.58199 -6.45071 -3.74846 1.54584 2.37634 2.73485 3.20632 3.27956 3.36118 3.62879 4.19629 4.46340 4.60636 4.63654 4.82398 4.85968 5.06639 5.23534 5.44320 5.50300 5.80601 6.01958 6.19284 6.54329 6.79611 7.04660 7.24826 7.28894 7.53323 8.11486 8.16297 8.66444 9.19948 9.58952 10.17359 10.71952 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.086964 B = 0.004671 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 321.894406 B = 5993.460701 C = 6300.193640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.469 5.469 3 C 0.177 3.823 4 N -0.476 5.476 5 C 0.034 3.966 6 C -0.052 4.052 7 C -0.145 4.145 8 C 0.455 3.545 9 O -0.612 6.612 10 N -0.545 5.545 11 C -0.290 4.290 12 H 0.107 0.893 13 C 0.020 3.980 14 N -0.889 5.889 15 Si 0.933 3.067 16 H -0.266 1.266 17 H -0.280 1.280 18 H -0.280 1.280 19 C -0.042 4.042 20 H 0.074 0.926 21 H 0.084 0.916 22 H 0.086 0.914 23 H 0.204 0.796 24 H 0.135 0.865 25 H 0.118 0.882 26 H 0.395 0.605 27 H 0.274 0.726 28 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.641 2.972 0.100 18.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.154 5.154 3 C -0.106 4.106 4 N -0.194 5.194 5 C -0.092 4.092 6 C -0.075 4.075 7 C -0.168 4.168 8 C 0.246 3.754 9 O -0.502 6.502 10 N -0.178 5.178 11 C -0.420 4.420 12 H 0.125 0.875 13 C -0.183 4.183 14 N -0.529 5.529 15 Si 0.760 3.240 16 H -0.190 1.190 17 H -0.206 1.206 18 H -0.206 1.206 19 C -0.175 4.175 20 H 0.093 0.907 21 H 0.102 0.898 22 H 0.104 0.896 23 H 0.220 0.780 24 H 0.153 0.847 25 H 0.136 0.864 26 H 0.229 0.771 27 H 0.084 0.916 28 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -17.946 2.845 0.101 18.170 hybrid contribution 0.028 -0.181 -0.015 0.184 sum -17.918 2.664 0.086 18.115 Atomic orbital electron populations 1.22006 0.76835 1.04534 1.03414 1.45354 1.07491 1.07111 1.55396 1.25111 0.85562 0.93295 1.06631 1.70672 1.18693 1.11584 1.18478 1.19771 0.92480 0.89579 1.07390 1.21180 0.88634 0.97809 0.99882 1.22106 0.93432 1.00223 1.01067 1.16725 0.83907 0.88376 0.86396 1.90633 1.87191 1.14237 1.58118 1.42011 1.04955 1.09659 1.61137 1.19891 0.83146 0.93094 1.45881 0.87473 1.25405 0.99700 0.96078 0.97158 1.69622 1.25893 1.08643 1.48760 0.85735 0.80492 0.80003 0.77773 1.19030 1.20627 1.20624 1.22796 0.90681 0.92537 1.11530 0.90692 0.89751 0.89556 0.77961 0.84724 0.86434 0.77137 0.91630 0.80479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.38 11.16 59.85 0.67 1.05 15 2 N -0.47 -4.90 3.15 -125.46 -0.39 -5.30 15 3 C 0.18 2.15 12.55 -89.89 -1.13 1.02 15 4 N -0.48 -8.04 10.87 -11.10 -0.12 -8.16 15 5 C 0.03 0.58 6.85 -83.19 -0.57 0.01 15 6 C -0.05 -1.02 9.62 -37.19 -0.36 -1.38 15 7 C -0.15 -3.22 9.43 -39.35 -0.37 -3.59 15 8 C 0.45 12.04 7.51 -14.99 -0.11 11.93 15 9 O -0.61 -17.99 15.68 5.09 0.08 -17.91 15 10 N -0.54 -14.98 5.27 -13.62 -0.07 -15.05 15 11 C -0.29 -8.42 9.68 -15.03 -0.15 -8.56 15 12 H 0.11 3.23 7.15 -52.49 -0.38 2.86 15 13 C 0.02 0.54 5.50 -17.45 -0.10 0.44 15 14 N -0.89 -24.81 13.05 55.50 0.72 -24.09 15 15 Si 0.93 21.34 29.55 -169.99 -5.02 16.31 15 16 H -0.27 -6.07 7.11 56.52 0.40 -5.67 15 17 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 19 C -0.04 -0.54 11.53 -16.19 -0.19 -0.73 15 20 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 15 21 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 15 22 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 15 23 H 0.20 1.58 8.06 -52.49 -0.42 1.16 15 24 H 0.14 2.61 7.45 -52.49 -0.39 2.22 15 25 H 0.12 2.49 7.75 -52.49 -0.41 2.09 15 26 H 0.39 10.45 7.85 -40.82 -0.32 10.13 15 27 H 0.27 7.13 8.31 -40.82 -0.34 6.79 15 28 H 0.18 1.75 8.06 -52.49 -0.42 1.33 15 LS Contribution 261.76 15.07 3.94 3.94 Total: -1.00 -35.38 261.76 -5.90 -41.28 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -2.74 Total: 8.78 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -2.30 Total: 0.18 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: 0.14 Total: -52.60 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: 0.08 Total: -17.91 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -35.38 -5.90 -41.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542734849.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.438 kcal (2) G-P(sol) polarization free energy of solvation -35.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds