Wall clock time and date at job start Mon Mar 30 2020 04:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.35853 * 126.17604 * 2 1 4 4 N 1.30183 * 109.11974 * 180.02562 * 3 2 1 5 5 C 1.35812 * 109.01900 * 359.97438 * 4 3 2 6 6 C 1.46735 * 126.24650 * 179.97438 * 5 4 3 7 7 C 1.35324 * 120.00080 * 359.74201 * 6 5 4 8 8 C 1.41560 * 120.00171 * 180.27805 * 7 6 5 9 9 O 1.21813 * 120.00206 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00174 * 179.97438 * 8 7 6 11 11 C 1.36806 * 120.00129 * 180.02562 * 10 8 7 12 12 H 1.08001 * 119.99624 * 359.97438 * 11 10 8 13 13 C 1.39045 * 120.00341 * 180.02562 * 11 10 8 14 14 N 1.31374 * 119.99854 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 120.00035 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47341 * 0.02562 * 15 13 11 17 17 H 1.48502 * 109.46856 * 120.00585 * 15 13 11 18 18 H 1.48498 * 109.47206 * 240.00057 * 15 13 11 19 19 C 1.36079 * 126.17632 * 180.30891 * 2 1 3 20 20 H 1.08996 * 109.46971 * 89.97968 * 1 2 3 21 21 H 1.09004 * 109.46969 * 209.97771 * 1 2 3 22 22 H 1.08999 * 109.47272 * 329.97660 * 1 2 3 23 23 H 1.07999 * 125.44066 * 0.04887 * 3 2 1 24 24 H 1.08002 * 120.00144 * 180.02562 * 6 5 4 25 25 H 1.08001 * 120.00250 * 0.27688 * 7 6 5 26 26 H 0.97000 * 120.00317 * 0.02562 * 10 8 7 27 27 H 0.96996 * 120.00306 * 179.97438 * 14 13 11 28 28 H 1.08000 * 126.64537 * 359.96414 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2669 1.0966 0.0000 4 7 3.5115 0.7148 -0.0006 5 6 3.5580 -0.6425 -0.0004 6 6 4.7704 -1.4691 -0.0013 7 6 5.9896 -0.8819 -0.0079 8 6 7.1593 -1.6793 -0.0148 9 8 7.0683 -2.8941 -0.0153 10 7 8.3735 -1.0945 -0.0218 11 6 9.5039 -1.8652 -0.0290 12 1 9.4231 -2.9421 -0.0286 13 6 10.7566 -1.2619 -0.0357 14 7 10.8548 0.0482 -0.0346 15 14 12.2999 -2.3142 -0.0448 16 1 11.9203 -3.7498 -0.0440 17 1 13.0965 -2.0139 -1.2616 18 1 13.1100 -2.0152 1.1633 19 6 2.2683 -1.0984 -0.0059 20 1 -0.3633 0.0004 -1.0276 21 1 -0.3633 -0.8902 0.5135 22 1 -0.3634 0.8898 0.5142 23 1 1.9263 2.1215 0.0008 24 1 4.6898 -2.5461 -0.0015 25 1 6.0704 0.1951 -0.0078 26 1 8.4461 -0.1272 -0.0217 27 1 11.7287 0.4691 -0.0389 28 1 1.9493 -2.1302 -0.0109 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001542734849.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:36 Heat of formation + Delta-G solvation = 15.217327 kcal Electronic energy + Delta-G solvation = -13701.765000 eV Core-core repulsion = 11139.249758 eV Total energy + Delta-G solvation = -2562.515242 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.79983 -40.25383 -36.21708 -35.42570 -33.56869 -33.23085 -30.35560 -28.04058 -26.95843 -24.43605 -22.16082 -21.42880 -20.32245 -19.39473 -18.28455 -17.47694 -16.67154 -16.51512 -15.89575 -15.37845 -15.30797 -14.93293 -14.58233 -14.03018 -13.78781 -13.49329 -13.35797 -12.96153 -12.79855 -12.44565 -12.09243 -11.60955 -11.18061 -10.98280 -10.46979 -10.41083 -10.07949 -8.90990 -8.52616 -5.95781 0.07351 1.27694 1.41053 1.44351 1.57649 1.96141 2.22098 2.29876 2.72291 3.33771 3.37420 3.65008 3.97004 4.10771 4.35236 4.36190 4.52278 4.56521 4.75761 4.80109 5.20186 5.35548 5.45852 5.51270 5.76524 6.01028 6.32486 6.55614 7.06484 7.10778 7.49535 8.07606 8.65299 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.086964 B = 0.004671 C = 0.004443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 321.894406 B = 5993.460701 C = 6300.193640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.461 5.461 3 C 0.186 3.814 4 N -0.526 5.526 5 C -0.033 4.033 6 C 0.005 3.995 7 C -0.198 4.198 8 C 0.462 3.538 9 O -0.649 6.649 10 N -0.559 5.559 11 C -0.334 4.334 12 H 0.085 0.915 13 C -0.017 4.017 14 N -0.915 5.915 15 Si 1.004 2.996 16 H -0.270 1.270 17 H -0.267 1.267 18 H -0.267 1.267 19 C 0.000 4.000 20 H 0.091 0.909 21 H 0.101 0.899 22 H 0.111 0.889 23 H 0.244 0.756 24 H 0.135 0.865 25 H 0.120 0.880 26 H 0.396 0.604 27 H 0.281 0.719 28 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.406 3.275 0.124 21.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.142 5.142 3 C -0.098 4.098 4 N -0.244 5.244 5 C -0.158 4.158 6 C -0.018 4.018 7 C -0.220 4.220 8 C 0.255 3.745 9 O -0.541 6.541 10 N -0.192 5.192 11 C -0.464 4.464 12 H 0.103 0.897 13 C -0.218 4.218 14 N -0.555 5.555 15 Si 0.827 3.173 16 H -0.194 1.194 17 H -0.192 1.192 18 H -0.192 1.192 19 C -0.138 4.138 20 H 0.110 0.890 21 H 0.120 0.880 22 H 0.130 0.870 23 H 0.260 0.740 24 H 0.153 0.847 25 H 0.138 0.862 26 H 0.229 0.771 27 H 0.091 0.909 28 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -20.753 3.187 0.126 20.997 hybrid contribution 0.398 -0.238 -0.023 0.465 sum -20.355 2.950 0.103 20.568 Atomic orbital electron populations 1.22460 0.73007 1.06776 1.05214 1.45738 1.09643 1.05797 1.53043 1.25860 0.84506 0.95215 1.04236 1.70558 1.21822 1.11789 1.20246 1.19629 0.92909 0.90180 1.13107 1.21446 0.89210 0.98222 0.92923 1.21713 0.92645 0.99850 1.07839 1.17351 0.84762 0.88203 0.84225 1.90574 1.87908 1.15950 1.59710 1.42000 1.05106 1.09513 1.62587 1.19855 0.84666 0.92408 1.49456 0.89737 1.26302 1.02197 0.97479 0.95785 1.69691 1.27088 1.09851 1.48867 0.84716 0.76273 0.77806 0.78550 1.19435 1.19232 1.19225 1.23257 0.89494 0.94516 1.06516 0.89035 0.88012 0.87037 0.74002 0.84721 0.86189 0.77053 0.90911 0.77170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.30 11.16 127.77 1.43 1.72 15 2 N -0.46 -7.55 3.15 -550.84 -1.73 -9.28 15 3 C 0.19 3.88 12.55 180.09 2.26 6.14 15 4 N -0.53 -17.11 10.87 -189.03 -2.06 -19.17 15 5 C -0.03 -1.09 6.85 40.41 0.28 -0.82 15 6 C 0.00 0.18 9.62 23.82 0.23 0.41 15 7 C -0.20 -9.19 9.43 22.42 0.21 -8.98 15 8 C 0.46 25.84 7.51 85.06 0.64 26.48 15 9 O -0.65 -40.02 15.68 -4.71 -0.07 -40.10 15 10 N -0.56 -32.60 5.27 -315.16 -1.66 -34.26 15 11 C -0.33 -20.41 9.68 84.11 0.81 -19.60 15 12 H 0.08 5.42 7.15 -2.91 -0.02 5.39 15 13 C -0.02 -0.97 5.50 84.96 0.47 -0.51 15 14 N -0.92 -52.21 13.05 21.68 0.28 -51.93 15 15 Si 1.00 44.51 29.55 68.60 2.03 46.54 15 16 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 17 H -0.27 -11.23 7.11 99.48 0.71 -10.52 15 18 H -0.27 -11.22 7.11 99.48 0.71 -10.51 15 19 C 0.00 -0.01 11.53 83.70 0.97 0.96 15 20 H 0.09 0.23 8.14 -2.39 -0.02 0.21 15 21 H 0.10 0.20 8.14 -2.39 -0.02 0.18 15 22 H 0.11 0.04 8.14 -2.39 -0.02 0.02 15 23 H 0.24 2.72 8.06 -2.91 -0.02 2.70 15 24 H 0.14 5.23 7.45 -2.91 -0.02 5.21 15 25 H 0.12 5.42 7.75 -2.91 -0.02 5.40 15 26 H 0.40 22.31 7.85 -92.71 -0.73 21.58 15 27 H 0.28 14.77 8.31 -92.71 -0.77 14.00 15 28 H 0.21 3.13 8.06 -2.91 -0.02 3.10 15 Total: -1.00 -81.45 261.76 4.53 -76.92 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: 0.45 Total: 25.47 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: 7.29 Total: 5.81 kcal Atomic # 7 Polarization: -109.47 SS G_CDS: -5.16 Total: -114.64 kcal Atomic # 8 Polarization: -40.02 SS G_CDS: -0.07 Total: -40.10 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -81.45 4.53 -76.92 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542734849.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.133 kcal (2) G-P(sol) polarization free energy of solvation -81.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds