Wall clock time and date at job start Mon Mar 30 2020 02:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34743 * 116.99845 * 2 1 4 4 O 1.21509 * 120.00241 * 0.02562 * 3 2 1 5 5 C 1.47487 * 119.99962 * 179.97438 * 3 2 1 6 6 C 1.40306 * 119.92762 * 0.26859 * 5 3 2 7 7 C 1.37667 * 120.48592 * 180.27682 * 6 5 3 8 8 C 1.38967 * 120.33228 * 359.45003 * 7 6 5 9 9 N 1.38234 * 120.08308 * 180.25204 * 8 7 6 10 10 C 1.41680 * 119.84037 * 0.27950 * 8 7 6 11 11 C 1.41129 * 120.23471 * 180.02562 * 10 8 7 12 12 H 1.07999 * 120.00485 * 25.60524 * 11 10 8 13 13 C 1.39918 * 120.00141 * 205.60266 * 11 10 8 14 14 N 1.30886 * 119.99761 * 15.32533 * 13 11 10 15 15 Si 1.86803 * 120.00250 * 195.32780 * 13 11 10 16 16 H 1.48497 * 109.47053 * 89.99993 * 15 13 11 17 17 H 1.48503 * 109.46887 * 209.99665 * 15 13 11 18 18 H 1.48491 * 109.46970 * 329.99714 * 15 13 11 19 19 C 1.39090 * 119.92583 * 180.02562 * 5 3 2 20 20 H 1.09001 * 109.47069 * 300.00005 * 1 2 3 21 21 H 1.09001 * 109.47266 * 60.00125 * 1 2 3 22 22 H 1.09000 * 109.47189 * 180.02562 * 1 2 3 23 23 H 1.07997 * 119.75674 * 0.02562 * 6 5 3 24 24 H 1.08000 * 119.83477 * 179.72738 * 7 6 5 25 25 H 0.97002 * 119.99599 * 359.97438 * 9 8 7 26 26 H 0.96998 * 120.00654 * 180.02562 * 9 8 7 27 27 H 0.97002 * 119.99794 * 180.02562 * 14 13 11 28 28 H 1.07994 * 120.17200 * 0.02562 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4020 2.2197 0.0005 5 6 3.5366 1.2778 0.0006 6 6 4.2993 0.1002 -0.0046 7 6 5.6747 0.1588 0.0016 8 6 6.3248 1.3871 0.0016 9 7 7.7061 1.4399 0.0026 10 6 5.5683 2.5850 0.0011 11 6 6.2199 3.8369 0.0005 12 1 7.2174 3.9264 -0.4038 13 6 5.5737 4.9622 0.5237 14 7 4.5119 4.8168 1.2751 15 14 6.2262 6.6722 0.1497 16 1 5.5854 7.1869 -1.0871 17 1 5.9146 7.5797 1.2831 18 1 7.6970 6.6092 -0.0442 19 6 4.1664 2.5179 0.0011 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 3.8037 -0.8594 -0.0094 24 1 6.2514 -0.7543 0.0020 25 1 8.2228 0.6190 0.0037 26 1 8.1587 2.2978 0.0029 27 1 4.0637 5.5970 1.6375 28 1 3.5797 3.4246 0.0015 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565504793.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:42 Heat of formation + Delta-G solvation = -71.918126 kcal Electronic energy + Delta-G solvation = -14545.676784 eV Core-core repulsion = 11947.090315 eV Total energy + Delta-G solvation = -2598.586470 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.52672 -37.75680 -35.57101 -33.65138 -33.33735 -29.65960 -28.53071 -26.91280 -25.14745 -22.24659 -21.20806 -19.61191 -17.70914 -16.46201 -15.99584 -15.63537 -15.58809 -15.55202 -14.72448 -13.51587 -12.78066 -12.73548 -12.67532 -12.50592 -11.93557 -11.69527 -11.54243 -11.21023 -11.10527 -10.49364 -10.19585 -10.18709 -9.63644 -9.45877 -9.42339 -9.16284 -7.53714 -6.75053 -6.49953 -4.20061 2.16867 2.83499 3.11751 3.13579 3.17484 3.53213 3.75228 3.98688 4.69626 5.05427 5.47172 5.53087 5.61582 5.67992 5.95576 6.18420 6.36544 6.85823 6.90294 7.04495 7.21327 7.27866 7.51534 7.73769 7.83549 8.06560 8.34012 8.64567 8.72580 8.76356 8.93553 8.99306 10.30468 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.027385 B = 0.009936 C = 0.007445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.223885 B = 2817.256316 C = 3759.932880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.364 6.364 3 C 0.511 3.489 4 O -0.526 6.526 5 C -0.166 4.166 6 C -0.125 4.125 7 C -0.198 4.198 8 C 0.155 3.845 9 N -0.873 5.873 10 C 0.044 3.956 11 C -0.467 4.467 12 H 0.074 0.926 13 C 0.073 3.927 14 N -0.799 5.799 15 Si 0.908 3.092 16 H -0.269 1.269 17 H -0.279 1.279 18 H -0.265 1.265 19 C -0.069 4.069 20 H 0.056 0.944 21 H 0.056 0.944 22 H 0.092 0.908 23 H 0.104 0.896 24 H 0.097 0.903 25 H 0.380 0.620 26 H 0.395 0.605 27 H 0.281 0.719 28 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.267 -5.355 -1.603 5.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.281 6.281 3 C 0.359 3.641 4 O -0.416 6.416 5 C -0.169 4.169 6 C -0.146 4.146 7 C -0.222 4.222 8 C 0.050 3.950 9 N -0.413 5.413 10 C 0.039 3.961 11 C -0.498 4.498 12 H 0.092 0.908 13 C -0.143 4.143 14 N -0.425 5.425 15 Si 0.733 3.267 16 H -0.194 1.194 17 H -0.205 1.205 18 H -0.189 1.189 19 C -0.090 4.090 20 H 0.075 0.925 21 H 0.074 0.926 22 H 0.110 0.890 23 H 0.122 0.878 24 H 0.115 0.885 25 H 0.206 0.794 26 H 0.224 0.776 27 H 0.092 0.908 28 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.721 -4.913 -1.453 5.174 hybrid contribution 0.342 0.827 -0.016 0.895 sum -0.380 -4.087 -1.469 4.359 Atomic orbital electron populations 1.23074 0.78157 1.02507 1.01981 1.86601 1.21881 1.34332 1.85317 1.21812 0.90073 0.80356 0.71819 1.90754 1.67116 1.36035 1.47677 1.18660 0.86433 0.95610 1.16174 1.20392 0.92936 0.95872 1.05362 1.19955 0.94128 0.94661 1.13430 1.18187 0.83775 0.93731 0.99262 1.41936 1.03861 1.09485 1.86012 1.17110 0.91080 0.91030 0.96891 1.19079 1.02064 0.92018 1.36679 0.90765 1.25785 0.94520 1.01160 0.92879 1.69789 1.16978 1.32416 1.23303 0.86321 0.79910 0.81588 0.78867 1.19440 1.20464 1.18947 1.21356 0.94130 0.95136 0.98397 0.92512 0.92559 0.88994 0.87753 0.88498 0.79364 0.77564 0.90839 0.84461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.57 101.05 1.07 1.62 15 2 O -0.36 -7.11 9.79 -40.61 -0.40 -7.50 15 3 C 0.51 11.93 7.89 34.50 0.27 12.20 15 4 O -0.53 -13.40 16.11 -19.27 -0.31 -13.71 15 5 C -0.17 -4.07 5.87 -105.04 -0.62 -4.69 15 6 C -0.13 -2.76 9.60 -39.01 -0.37 -3.14 15 7 C -0.20 -4.21 9.84 -39.52 -0.39 -4.60 15 8 C 0.15 3.51 6.78 -83.39 -0.57 2.94 15 9 N -0.87 -16.16 8.95 32.70 0.29 -15.87 15 10 C 0.04 1.13 5.58 -106.69 -0.60 0.54 15 11 C -0.47 -11.93 8.50 -37.86 -0.32 -12.25 15 12 H 0.07 1.76 6.67 -52.49 -0.35 1.41 15 13 C 0.07 1.84 5.18 -17.33 -0.09 1.75 15 14 N -0.80 -21.32 10.88 55.55 0.60 -20.72 15 15 Si 0.91 18.87 29.59 -169.99 -5.03 13.84 15 16 H -0.27 -5.61 7.11 56.52 0.40 -5.21 15 17 H -0.28 -5.75 7.11 56.52 0.40 -5.35 15 18 H -0.27 -5.34 7.11 56.52 0.40 -4.93 15 19 C -0.07 -1.84 8.21 -38.47 -0.32 -2.16 15 20 H 0.06 0.83 8.14 -51.93 -0.42 0.41 15 21 H 0.06 0.81 8.14 -51.93 -0.42 0.38 15 22 H 0.09 0.99 8.14 -51.93 -0.42 0.57 15 23 H 0.10 2.05 7.58 -52.49 -0.40 1.66 15 24 H 0.10 1.75 8.06 -52.49 -0.42 1.33 15 25 H 0.38 5.74 8.82 -40.82 -0.36 5.38 15 26 H 0.40 7.17 7.02 -40.82 -0.29 6.89 15 27 H 0.28 6.95 8.30 -40.82 -0.34 6.61 15 28 H 0.14 3.98 5.70 -52.49 -0.30 3.68 15 LS Contribution 251.21 15.07 3.79 3.79 Total: -1.00 -29.62 251.21 -5.50 -35.12 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -2.52 Total: 12.82 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -1.93 Total: -7.77 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.90 Total: -36.59 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: -0.71 Total: -21.21 kcal Atomic # 14 Polarization: 18.87 SS G_CDS: -5.03 Total: 13.84 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -29.62 -5.50 -35.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565504793.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.799 kcal (2) G-P(sol) polarization free energy of solvation -29.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds