Wall clock time and date at job start Mon Mar 30 2020 02:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34743 * 116.99845 * 2 1 4 4 O 1.21509 * 120.00241 * 0.02562 * 3 2 1 5 5 C 1.47487 * 119.99962 * 179.97438 * 3 2 1 6 6 C 1.40306 * 119.92762 * 0.26859 * 5 3 2 7 7 C 1.37667 * 120.48592 * 180.27682 * 6 5 3 8 8 C 1.38967 * 120.33228 * 359.45003 * 7 6 5 9 9 N 1.38234 * 120.08308 * 180.25204 * 8 7 6 10 10 C 1.41680 * 119.84037 * 0.27950 * 8 7 6 11 11 C 1.41129 * 120.23471 * 180.02562 * 10 8 7 12 12 H 1.07999 * 120.00485 * 25.60524 * 11 10 8 13 13 C 1.39918 * 120.00141 * 205.60266 * 11 10 8 14 14 N 1.30886 * 119.99761 * 15.32533 * 13 11 10 15 15 Si 1.86803 * 120.00250 * 195.32780 * 13 11 10 16 16 H 1.48497 * 109.47053 * 89.99993 * 15 13 11 17 17 H 1.48503 * 109.46887 * 209.99665 * 15 13 11 18 18 H 1.48491 * 109.46970 * 329.99714 * 15 13 11 19 19 C 1.39090 * 119.92583 * 180.02562 * 5 3 2 20 20 H 1.09001 * 109.47069 * 300.00005 * 1 2 3 21 21 H 1.09001 * 109.47266 * 60.00125 * 1 2 3 22 22 H 1.09000 * 109.47189 * 180.02562 * 1 2 3 23 23 H 1.07997 * 119.75674 * 0.02562 * 6 5 3 24 24 H 1.08000 * 119.83477 * 179.72738 * 7 6 5 25 25 H 0.97002 * 119.99599 * 359.97438 * 9 8 7 26 26 H 0.96998 * 120.00654 * 180.02562 * 9 8 7 27 27 H 0.97002 * 119.99794 * 180.02562 * 14 13 11 28 28 H 1.07994 * 120.17200 * 0.02562 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4020 2.2197 0.0005 5 6 3.5366 1.2778 0.0006 6 6 4.2993 0.1002 -0.0046 7 6 5.6747 0.1588 0.0016 8 6 6.3248 1.3871 0.0016 9 7 7.7061 1.4399 0.0026 10 6 5.5683 2.5850 0.0011 11 6 6.2199 3.8369 0.0005 12 1 7.2174 3.9264 -0.4038 13 6 5.5737 4.9622 0.5237 14 7 4.5119 4.8168 1.2751 15 14 6.2262 6.6722 0.1497 16 1 5.5854 7.1869 -1.0871 17 1 5.9146 7.5797 1.2831 18 1 7.6970 6.6092 -0.0442 19 6 4.1664 2.5179 0.0011 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 3.8037 -0.8594 -0.0094 24 1 6.2514 -0.7543 0.0020 25 1 8.2228 0.6190 0.0037 26 1 8.1587 2.2978 0.0029 27 1 4.0637 5.5970 1.6375 28 1 3.5797 3.4246 0.0015 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565504793.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:42 Heat of formation + Delta-G solvation = -91.274118 kcal Electronic energy + Delta-G solvation = -14546.516123 eV Core-core repulsion = 11947.090315 eV Total energy + Delta-G solvation = -2599.425808 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.084 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.24274 -39.51628 -37.26344 -35.49057 -35.05404 -31.50765 -30.17596 -28.36343 -26.95465 -23.96908 -23.02773 -21.34580 -19.49990 -18.15624 -17.81365 -17.32838 -17.17942 -17.17152 -16.44714 -15.12955 -14.48411 -14.37827 -14.30980 -14.23756 -13.70283 -13.38809 -13.01485 -12.86035 -12.80221 -12.20980 -12.00880 -11.70774 -11.42210 -11.25798 -11.15045 -11.01251 -9.39689 -8.58120 -8.24920 -6.10900 0.34621 1.04328 1.40874 1.50216 1.53245 1.94716 1.98853 2.25505 2.85822 3.48934 3.73385 4.19154 4.35911 4.37981 4.49133 4.67508 4.70958 5.05400 5.11788 5.33112 5.40881 5.47184 5.73396 5.93270 5.99433 6.22738 6.48777 6.84943 6.96823 6.99975 7.14545 7.42666 8.47398 Molecular weight = 221.08amu Principal moments of inertia in cm(-1) A = 0.027385 B = 0.009936 C = 0.007445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.223885 B = 2817.256316 C = 3759.932880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.512 3.488 4 O -0.561 6.561 5 C -0.194 4.194 6 C -0.105 4.105 7 C -0.203 4.203 8 C 0.165 3.835 9 N -0.855 5.855 10 C 0.007 3.993 11 C -0.491 4.491 12 H 0.086 0.914 13 C 0.026 3.974 14 N -0.843 5.843 15 Si 0.978 3.022 16 H -0.272 1.272 17 H -0.278 1.278 18 H -0.249 1.249 19 C -0.100 4.100 20 H 0.054 0.946 21 H 0.057 0.943 22 H 0.140 0.860 23 H 0.134 0.866 24 H 0.140 0.860 25 H 0.402 0.598 26 H 0.399 0.601 27 H 0.280 0.720 28 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.977 -7.195 -1.967 7.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C 0.362 3.638 4 O -0.454 6.454 5 C -0.197 4.197 6 C -0.125 4.125 7 C -0.226 4.226 8 C 0.058 3.942 9 N -0.395 5.395 10 C 0.002 3.998 11 C -0.523 4.523 12 H 0.104 0.896 13 C -0.186 4.186 14 N -0.471 5.471 15 Si 0.800 3.200 16 H -0.198 1.198 17 H -0.203 1.203 18 H -0.172 1.172 19 C -0.122 4.122 20 H 0.073 0.927 21 H 0.076 0.924 22 H 0.158 0.842 23 H 0.152 0.848 24 H 0.157 0.843 25 H 0.231 0.769 26 H 0.228 0.772 27 H 0.090 0.910 28 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.570 -6.805 -1.823 7.068 hybrid contribution -0.058 1.170 0.081 1.175 sum 0.512 -5.635 -1.742 5.920 Atomic orbital electron populations 1.23522 0.75261 1.05672 1.02047 1.86551 1.24621 1.31912 1.84510 1.21719 0.89941 0.80939 0.71218 1.90725 1.67777 1.37448 1.49469 1.18862 0.87580 0.95844 1.17456 1.20776 0.93439 0.96013 1.02252 1.20379 0.94156 0.95616 1.12441 1.18368 0.85340 0.93358 0.97098 1.41878 1.02459 1.10921 1.84272 1.17423 0.91230 0.92665 0.98441 1.19397 1.02818 0.92672 1.37374 0.89564 1.26668 0.94576 1.05044 0.92306 1.69921 1.18802 1.33251 1.25111 0.85251 0.79945 0.76554 0.78201 1.19769 1.20308 1.17198 1.21159 0.94778 0.94966 1.01273 0.92699 0.92416 0.84187 0.84813 0.84275 0.76899 0.77195 0.91012 0.88003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 10.57 113.37 1.20 1.97 15 2 O -0.36 -13.52 9.79 -56.53 -0.55 -14.08 15 3 C 0.51 24.22 7.89 70.26 0.55 24.78 15 4 O -0.56 -29.73 16.11 19.81 0.32 -29.41 15 5 C -0.19 -9.62 5.87 -20.13 -0.12 -9.74 15 6 C -0.10 -4.38 9.60 22.64 0.22 -4.17 15 7 C -0.20 -7.94 9.84 22.31 0.22 -7.72 15 8 C 0.17 7.19 6.78 39.16 0.27 7.46 15 9 N -0.86 -29.23 8.95 -50.47 -0.45 -29.68 15 10 C 0.01 0.38 5.58 -21.20 -0.12 0.26 15 11 C -0.49 -25.45 8.50 23.39 0.20 -25.25 15 12 H 0.09 4.06 6.67 -2.91 -0.02 4.04 15 13 C 0.03 1.35 5.18 85.24 0.44 1.79 15 14 N -0.84 -47.31 10.88 21.83 0.24 -47.08 15 15 Si 0.98 39.48 29.59 68.60 2.03 41.51 15 16 H -0.27 -11.00 7.11 99.48 0.71 -10.29 15 17 H -0.28 -11.00 7.11 99.48 0.71 -10.29 15 18 H -0.25 -9.25 7.11 99.48 0.71 -8.54 15 19 C -0.10 -5.56 8.21 22.99 0.19 -5.37 15 20 H 0.05 1.54 8.14 -2.39 -0.02 1.52 15 21 H 0.06 1.58 8.14 -2.39 -0.02 1.56 15 22 H 0.14 2.50 8.14 -2.39 -0.02 2.48 15 23 H 0.13 4.75 7.58 -2.91 -0.02 4.73 15 24 H 0.14 4.28 8.06 -2.91 -0.02 4.25 15 25 H 0.40 10.50 8.82 -92.71 -0.82 9.68 15 26 H 0.40 13.55 7.02 -92.71 -0.65 12.90 15 27 H 0.28 14.67 8.30 -92.71 -0.77 13.90 15 28 H 0.10 6.34 5.70 -2.91 -0.02 6.32 15 Total: -1.00 -66.84 251.21 4.37 -62.47 By element: Atomic # 1 Polarization: 32.52 SS G_CDS: -0.26 Total: 32.26 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: 3.05 Total: -15.99 kcal Atomic # 7 Polarization: -76.54 SS G_CDS: -0.21 Total: -76.76 kcal Atomic # 8 Polarization: -43.25 SS G_CDS: -0.23 Total: -43.49 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.51 kcal Total: -66.84 4.37 -62.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565504793.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.809 kcal (2) G-P(sol) polarization free energy of solvation -66.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds