Wall clock time and date at job start Mon Mar 30 2020 02:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48503 * 109.47078 * 270.00330 * 3 2 1 5 5 H 1.48498 * 109.47066 * 30.00553 * 3 2 1 6 6 H 1.48498 * 109.46882 * 150.00078 * 3 2 1 7 7 C 1.38977 * 119.99524 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00070 * 359.97438 * 7 2 1 9 9 N 1.36988 * 119.99595 * 179.97438 * 7 2 1 10 10 C 1.34771 * 119.99693 * 179.97438 * 9 7 2 11 11 O 1.21626 * 120.00240 * 359.97438 * 10 9 7 12 12 C 1.47358 * 119.99903 * 180.02562 * 10 9 7 13 13 C 1.41743 * 126.50756 * 359.91307 * 12 10 9 14 14 N 1.30284 * 108.01367 * 179.97438 * 13 12 10 15 15 N 1.40514 * 109.03522 * 359.95188 * 14 13 12 16 16 C 1.34241 * 108.28436 * 0.22981 * 15 14 13 17 17 C 1.51387 * 110.36787 * 179.70541 * 16 15 14 18 18 C 1.54568 * 104.14413 * 343.53659 * 17 16 15 19 19 C 1.47252 * 140.81240 * 180.29846 * 15 14 13 20 20 H 0.97007 * 120.00182 * 359.97438 * 1 2 3 21 21 H 0.97005 * 119.99774 * 359.97438 * 9 7 2 22 22 H 1.08004 * 126.00052 * 359.91314 * 13 12 10 23 23 H 1.09001 * 110.49591 * 224.87188 * 17 16 15 24 24 H 1.09004 * 110.49635 * 102.19765 * 17 16 15 25 25 H 1.09000 * 110.98942 * 266.94486 * 18 17 16 26 26 H 1.08999 * 111.02863 * 143.14650 * 18 17 16 27 27 H 1.09002 * 110.23109 * 78.01388 * 19 15 14 28 28 H 1.09000 * 110.22779 * 316.14249 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2036 -0.0005 8 1 1.4689 -2.1389 -0.0005 9 7 3.3788 -1.2036 -0.0011 10 6 4.0526 -2.3708 -0.0011 11 8 3.4444 -3.4241 -0.0001 12 6 5.5262 -2.3709 -0.0011 13 6 6.3695 -1.2317 -0.0028 14 7 7.6050 -1.6450 -0.0016 15 7 7.6182 -3.0501 0.0020 16 6 6.3476 -3.4832 -0.0021 17 6 6.3068 -4.9965 -0.0057 18 6 7.7345 -5.4118 -0.4280 19 6 8.5593 -4.1826 0.0099 20 1 -0.4851 0.8401 0.0004 21 1 3.8638 -0.3635 -0.0014 22 1 6.0449 -0.2015 -0.0057 23 1 5.5750 -5.3568 -0.7287 24 1 6.0785 -5.3745 0.9908 25 1 7.7955 -5.5589 -1.5063 26 1 8.0551 -6.3070 0.1048 27 1 8.9583 -4.3342 1.0129 28 1 9.3711 -4.0029 -0.6949 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001626567342.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:39 Heat of formation + Delta-G solvation = 53.660932 kcal Electronic energy + Delta-G solvation = -14528.042502 eV Core-core repulsion = 11967.194301 eV Total energy + Delta-G solvation = -2560.848202 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.44256 -37.93994 -36.12120 -33.90566 -31.63505 -30.63914 -29.24793 -27.30893 -24.60726 -22.23283 -21.42556 -20.04723 -19.10863 -18.13662 -16.66888 -16.11526 -14.92891 -14.34317 -14.29737 -13.93279 -13.74790 -13.38253 -13.22484 -12.86388 -12.62057 -12.06572 -11.86967 -11.63891 -11.27392 -11.17020 -10.63711 -10.49136 -9.93446 -9.54564 -9.10917 -8.52349 -8.20009 -8.08363 -6.28114 -3.75354 1.93246 2.36877 2.61502 3.09215 3.13070 3.19548 4.05786 4.14538 4.37858 4.52264 4.58187 4.66794 4.90413 5.11324 5.33122 5.33949 5.39431 5.47748 5.76076 5.82003 5.86652 5.95102 6.36798 6.78695 6.92620 7.63057 7.90607 8.21255 8.66712 8.99703 9.48490 9.93107 10.84824 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.049695 B = 0.007686 C = 0.006709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.305315 B = 3641.949445 C = 4172.388345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.041 3.959 3 Si 0.877 3.123 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.299 4.299 8 H 0.121 0.879 9 N -0.581 5.581 10 C 0.525 3.475 11 O -0.584 6.584 12 C -0.244 4.244 13 C 0.070 3.930 14 N -0.283 5.283 15 N -0.395 5.395 16 C 0.115 3.885 17 C -0.064 4.064 18 C -0.134 4.134 19 C 0.131 3.869 20 H 0.273 0.727 21 H 0.370 0.630 22 H 0.190 0.810 23 H 0.103 0.897 24 H 0.098 0.902 25 H 0.086 0.914 26 H 0.101 0.899 27 H 0.087 0.913 28 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.410 -5.840 -0.222 17.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.162 4.162 3 Si 0.703 3.297 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.193 1.193 7 C -0.428 4.428 8 H 0.139 0.861 9 N -0.219 5.219 10 C 0.312 3.688 11 O -0.469 6.469 12 C -0.259 4.259 13 C -0.117 4.117 14 N -0.102 5.102 15 N -0.177 5.177 16 C -0.017 4.017 17 C -0.103 4.103 18 C -0.172 4.172 19 C 0.010 3.990 20 H 0.084 0.916 21 H 0.203 0.797 22 H 0.207 0.793 23 H 0.122 0.878 24 H 0.116 0.884 25 H 0.105 0.895 26 H 0.119 0.881 27 H 0.105 0.895 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 17.248 -6.012 -0.219 18.267 hybrid contribution -0.252 1.383 0.043 1.406 sum 16.996 -4.629 -0.175 17.616 Atomic orbital electron populations 1.69623 1.05642 1.27524 1.49193 1.25043 0.95509 0.97992 0.97693 0.86701 0.79965 0.84001 0.79031 1.19461 1.20118 1.19294 1.19460 0.79227 0.96703 1.47403 0.86116 1.42011 1.07368 1.06049 1.66440 1.16697 0.84249 0.84388 0.83422 1.90610 1.69203 1.30974 1.56078 1.20036 0.95151 0.90560 1.20112 1.24198 0.89457 0.99584 0.98501 1.77056 1.21161 0.85823 1.26200 1.49993 1.06826 1.04201 1.56673 1.22360 0.86165 0.95531 0.97606 1.20884 0.97180 0.87709 1.04514 1.22851 0.94463 0.96781 1.03120 1.22316 0.91891 0.81651 1.03161 0.91603 0.79695 0.79303 0.87815 0.88403 0.89484 0.88093 0.89488 0.89213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.87 13.96 55.50 0.77 -25.10 15 2 C 0.04 1.13 5.50 -17.46 -0.10 1.03 15 3 Si 0.88 19.66 27.74 -169.99 -4.71 14.95 15 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 15 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 15 6 H -0.27 -5.47 6.52 56.52 0.37 -5.10 15 7 C -0.30 -8.63 10.16 -14.97 -0.15 -8.79 15 8 H 0.12 3.94 7.38 -52.49 -0.39 3.55 15 9 N -0.58 -14.60 5.08 -11.97 -0.06 -14.66 15 10 C 0.53 12.98 7.76 -12.55 -0.10 12.88 15 11 O -0.58 -16.31 16.47 5.25 0.09 -16.22 15 12 C -0.24 -4.97 6.15 -104.84 -0.64 -5.61 15 13 C 0.07 1.25 11.52 -16.87 -0.19 1.06 15 14 N -0.28 -4.96 12.64 30.93 0.39 -4.57 15 15 N -0.40 -6.15 4.81 -55.07 -0.27 -6.41 15 16 C 0.12 2.00 7.31 -81.19 -0.59 1.40 15 17 C -0.06 -0.82 6.86 -26.72 -0.18 -1.00 15 18 C -0.13 -1.09 7.18 -25.19 -0.18 -1.27 15 19 C 0.13 1.28 7.77 -2.91 -0.02 1.26 15 20 H 0.27 7.41 8.31 -40.82 -0.34 7.07 15 21 H 0.37 8.20 4.73 -40.82 -0.19 8.01 15 22 H 0.19 2.87 7.52 -52.48 -0.39 2.47 15 23 H 0.10 1.41 8.14 -51.93 -0.42 0.99 15 24 H 0.10 1.17 8.14 -51.93 -0.42 0.75 15 25 H 0.09 0.65 8.14 -51.93 -0.42 0.22 15 26 H 0.10 0.52 8.14 -51.93 -0.42 0.09 15 27 H 0.09 0.71 8.14 -51.93 -0.42 0.28 15 28 H 0.09 0.73 8.14 -51.93 -0.42 0.31 15 LS Contribution 248.44 15.07 3.74 3.74 Total: -1.00 -35.04 248.44 -4.89 -39.93 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -2.68 Total: 7.37 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -2.17 Total: 0.96 kcal Atomic # 7 Polarization: -51.58 SS G_CDS: 0.84 Total: -50.74 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: 0.09 Total: -16.22 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -4.71 Total: 14.95 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -35.04 -4.89 -39.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626567342.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.592 kcal (2) G-P(sol) polarization free energy of solvation -35.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds