Wall clock time and date at job start Mon Mar 30 2020 02:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48503 * 109.47078 * 270.00330 * 3 2 1 5 5 H 1.48498 * 109.47066 * 30.00553 * 3 2 1 6 6 H 1.48498 * 109.46882 * 150.00078 * 3 2 1 7 7 C 1.38977 * 119.99524 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00070 * 359.97438 * 7 2 1 9 9 N 1.36988 * 119.99595 * 179.97438 * 7 2 1 10 10 C 1.34771 * 119.99693 * 179.97438 * 9 7 2 11 11 O 1.21626 * 120.00240 * 359.97438 * 10 9 7 12 12 C 1.47358 * 119.99903 * 180.02562 * 10 9 7 13 13 C 1.41743 * 126.50756 * 359.91307 * 12 10 9 14 14 N 1.30284 * 108.01367 * 179.97438 * 13 12 10 15 15 N 1.40514 * 109.03522 * 359.95188 * 14 13 12 16 16 C 1.34241 * 108.28436 * 0.22981 * 15 14 13 17 17 C 1.51387 * 110.36787 * 179.70541 * 16 15 14 18 18 C 1.54568 * 104.14413 * 343.53659 * 17 16 15 19 19 C 1.47252 * 140.81240 * 180.29846 * 15 14 13 20 20 H 0.97007 * 120.00182 * 359.97438 * 1 2 3 21 21 H 0.97005 * 119.99774 * 359.97438 * 9 7 2 22 22 H 1.08004 * 126.00052 * 359.91314 * 13 12 10 23 23 H 1.09001 * 110.49591 * 224.87188 * 17 16 15 24 24 H 1.09004 * 110.49635 * 102.19765 * 17 16 15 25 25 H 1.09000 * 110.98942 * 266.94486 * 18 17 16 26 26 H 1.08999 * 111.02863 * 143.14650 * 18 17 16 27 27 H 1.09002 * 110.23109 * 78.01388 * 19 15 14 28 28 H 1.09000 * 110.22779 * 316.14249 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2036 -0.0005 8 1 1.4689 -2.1389 -0.0005 9 7 3.3788 -1.2036 -0.0011 10 6 4.0526 -2.3708 -0.0011 11 8 3.4444 -3.4241 -0.0001 12 6 5.5262 -2.3709 -0.0011 13 6 6.3695 -1.2317 -0.0028 14 7 7.6050 -1.6450 -0.0016 15 7 7.6182 -3.0501 0.0020 16 6 6.3476 -3.4832 -0.0021 17 6 6.3068 -4.9965 -0.0057 18 6 7.7345 -5.4118 -0.4280 19 6 8.5593 -4.1826 0.0099 20 1 -0.4851 0.8401 0.0004 21 1 3.8638 -0.3635 -0.0014 22 1 6.0449 -0.2015 -0.0057 23 1 5.5750 -5.3568 -0.7287 24 1 6.0785 -5.3745 0.9908 25 1 7.7955 -5.5589 -1.5063 26 1 8.0551 -6.3070 0.1048 27 1 8.9583 -4.3342 1.0129 28 1 9.3711 -4.0029 -0.6949 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626567342.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:39 Heat of formation + Delta-G solvation = 26.482923 kcal Electronic energy + Delta-G solvation = -14529.221029 eV Core-core repulsion = 11967.194301 eV Total energy + Delta-G solvation = -2562.026729 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.71689 -39.88115 -37.20967 -35.99691 -33.74413 -31.94086 -30.37604 -28.64359 -26.49585 -23.38630 -22.78420 -21.33937 -21.04960 -19.84455 -18.13060 -17.35559 -16.88185 -15.78817 -15.62013 -15.44199 -15.27676 -14.80087 -14.58661 -14.34925 -14.01002 -13.98487 -12.99682 -12.96340 -12.46265 -12.42012 -12.07145 -12.00296 -11.90375 -11.53349 -10.52989 -10.28302 -10.25938 -9.60325 -8.41391 -5.99285 0.56746 1.12871 1.29224 1.31871 1.40704 1.44695 2.23518 2.50092 2.95835 3.16791 3.26627 3.54379 3.73076 3.93974 4.09947 4.24912 4.43289 4.51878 4.57528 4.80903 4.90583 5.03048 5.11562 5.38401 5.58516 5.73671 5.95818 6.55072 6.64682 6.86541 7.39786 7.95317 8.75859 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.049695 B = 0.007686 C = 0.006709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.305315 B = 3641.949445 C = 4172.388345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.957 3.043 4 H -0.254 1.254 5 H -0.270 1.270 6 H -0.233 1.233 7 C -0.326 4.326 8 H 0.060 0.940 9 N -0.582 5.582 10 C 0.529 3.471 11 O -0.628 6.628 12 C -0.293 4.293 13 C 0.076 3.924 14 N -0.295 5.295 15 N -0.386 5.386 16 C 0.118 3.882 17 C -0.073 4.073 18 C -0.112 4.112 19 C 0.116 3.884 20 H 0.280 0.720 21 H 0.387 0.613 22 H 0.212 0.788 23 H 0.090 0.910 24 H 0.106 0.894 25 H 0.097 0.903 26 H 0.142 0.858 27 H 0.112 0.888 28 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.146 -5.314 -0.156 20.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.211 4.211 3 Si 0.776 3.224 4 H -0.179 1.179 5 H -0.195 1.195 6 H -0.156 1.156 7 C -0.456 4.456 8 H 0.079 0.921 9 N -0.221 5.221 10 C 0.318 3.682 11 O -0.515 6.515 12 C -0.308 4.308 13 C -0.111 4.111 14 N -0.114 5.114 15 N -0.166 5.166 16 C -0.017 4.017 17 C -0.112 4.112 18 C -0.150 4.150 19 C -0.003 4.003 20 H 0.090 0.910 21 H 0.223 0.777 22 H 0.228 0.772 23 H 0.108 0.892 24 H 0.125 0.875 25 H 0.116 0.884 26 H 0.160 0.840 27 H 0.130 0.870 28 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 21.045 -5.498 -0.153 21.752 hybrid contribution -1.356 1.004 0.024 1.688 sum 19.688 -4.494 -0.129 20.195 Atomic orbital electron populations 1.69788 1.07951 1.29306 1.49954 1.26061 0.96481 1.02493 0.96023 0.85478 0.79675 0.77022 0.80196 1.17863 1.19523 1.15640 1.19040 0.81068 0.95253 1.50197 0.92145 1.41771 1.05886 1.07096 1.67349 1.17422 0.86218 0.83500 0.81059 1.90565 1.70875 1.32526 1.57577 1.19762 0.92720 0.93310 1.25034 1.24479 0.88970 1.00044 0.97627 1.76990 1.20729 0.87257 1.26395 1.50537 1.07373 1.04324 1.54415 1.22996 0.86581 0.97255 0.94831 1.21137 1.00320 0.84903 1.04870 1.22926 0.90246 0.97469 1.04384 1.22942 0.91762 0.79996 1.05549 0.91010 0.77731 0.77174 0.89192 0.87539 0.88419 0.83958 0.86995 0.86844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.74 13.96 21.67 0.30 -56.44 15 2 C -0.01 -0.65 5.50 84.93 0.47 -0.19 15 3 Si 0.96 39.95 27.74 68.60 1.90 41.85 15 4 H -0.25 -10.04 7.11 99.48 0.71 -9.33 15 5 H -0.27 -11.05 7.11 99.48 0.71 -10.34 15 6 H -0.23 -8.36 6.52 99.48 0.65 -7.71 15 7 C -0.33 -19.85 10.16 84.06 0.85 -19.00 15 8 H 0.06 4.30 7.38 -2.91 -0.02 4.28 15 9 N -0.58 -29.90 5.08 -310.03 -1.57 -31.47 15 10 C 0.53 27.02 7.76 86.64 0.67 27.69 15 11 O -0.63 -37.06 16.47 -4.11 -0.07 -37.13 15 12 C -0.29 -11.88 6.15 -20.00 -0.12 -12.00 15 13 C 0.08 2.58 11.52 85.79 0.99 3.57 15 14 N -0.29 -9.57 12.64 -56.05 -0.71 -10.27 15 15 N -0.39 -10.86 4.81 -328.14 -1.58 -12.44 15 16 C 0.12 3.93 7.31 42.42 0.31 4.24 15 17 C -0.07 -1.75 6.86 30.60 0.21 -1.54 15 18 C -0.11 -1.33 7.18 31.59 0.23 -1.11 15 19 C 0.12 1.74 7.77 86.70 0.67 2.41 15 20 H 0.28 15.58 8.31 -92.70 -0.77 14.81 15 21 H 0.39 16.82 4.73 -92.70 -0.44 16.38 15 22 H 0.21 5.84 7.52 -2.91 -0.02 5.82 15 23 H 0.09 2.41 8.14 -2.39 -0.02 2.39 15 24 H 0.11 2.35 8.14 -2.38 -0.02 2.34 15 25 H 0.10 1.01 8.14 -2.39 -0.02 0.99 15 26 H 0.14 0.61 8.14 -2.39 -0.02 0.59 15 27 H 0.11 1.22 8.14 -2.39 -0.02 1.20 15 28 H 0.11 1.26 8.14 -2.39 -0.02 1.24 15 Total: -1.00 -82.40 248.44 3.25 -79.15 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.69 Total: 22.67 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 4.28 Total: 4.09 kcal Atomic # 7 Polarization: -107.07 SS G_CDS: -3.56 Total: -110.63 kcal Atomic # 8 Polarization: -37.06 SS G_CDS: -0.07 Total: -37.13 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 1.90 Total: 41.85 kcal Total: -82.40 3.25 -79.15 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626567342.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.635 kcal (2) G-P(sol) polarization free energy of solvation -82.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds