Wall clock time and date at job start Mon Mar 30 2020 03:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38064 * 119.57475 * 2 1 4 4 C 1.38845 * 119.32751 * 180.02562 * 3 2 1 5 5 C 1.38338 * 118.50695 * 0.27514 * 4 3 2 6 6 C 1.39103 * 119.09661 * 359.43496 * 5 4 3 7 7 N 1.39003 * 119.70459 * 180.30116 * 6 5 4 8 8 N 1.40099 * 119.99910 * 180.28106 * 7 6 5 9 9 C 1.34780 * 120.00294 * 179.97438 * 8 7 6 10 10 O 1.21693 * 119.99576 * 359.97438 * 9 8 7 11 11 C 1.46370 * 120.00417 * 179.97438 * 9 8 7 12 12 H 1.08004 * 119.99739 * 359.97438 * 11 9 8 13 13 C 1.40048 * 119.99974 * 180.02562 * 11 9 8 14 14 N 1.30671 * 120.00071 * 359.97438 * 13 11 9 15 15 Si 1.86802 * 119.99854 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47159 * 59.99761 * 15 13 11 17 17 H 1.48496 * 109.47264 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47048 * 299.99852 * 15 13 11 19 19 N 1.31948 * 119.57261 * 179.97438 * 2 1 3 20 20 H 1.09000 * 109.47584 * 90.00217 * 1 2 3 21 21 H 1.08998 * 109.47367 * 210.00697 * 1 2 3 22 22 H 1.09009 * 109.46915 * 329.99894 * 1 2 3 23 23 H 1.08001 * 120.33584 * 359.97158 * 3 2 1 24 24 H 1.08002 * 120.74353 * 179.97438 * 4 3 2 25 25 H 1.07995 * 120.45213 * 179.70293 * 5 4 3 26 26 H 0.96993 * 120.00268 * 0.27252 * 7 6 5 27 27 H 0.96998 * 120.00336 * 359.97438 * 8 7 6 28 28 H 0.97003 * 119.99857 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1884 1.2008 0.0000 4 6 3.5768 1.1948 -0.0005 5 6 4.2318 -0.0237 -0.0069 6 6 3.4815 -1.1950 -0.0005 7 7 4.1267 -2.4263 -0.0005 8 7 3.3771 -3.6099 0.0000 9 6 4.0025 -4.8038 -0.0005 10 8 5.2185 -4.8536 -0.0017 11 6 3.2194 -6.0403 0.0006 12 1 2.1403 -5.9961 0.0021 13 6 3.8694 -7.2808 0.0007 14 7 5.1750 -7.3343 -0.0007 15 14 2.8700 -8.8590 0.0027 16 1 2.0124 -8.9033 -1.2088 17 1 3.7879 -10.0263 0.0031 18 1 2.0151 -8.9019 1.2162 19 7 2.1582 -1.1476 0.0005 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3634 -0.8899 0.5139 22 1 -0.3633 0.8901 0.5139 23 1 1.6469 2.1352 -0.0005 24 1 4.1329 2.1206 -0.0010 25 1 5.3110 -0.0650 -0.0123 26 1 5.0958 -2.4660 -0.0008 27 1 2.4079 -3.5702 0.0006 28 1 5.6252 -8.1936 -0.0010 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001633577334.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:32 Heat of formation + Delta-G solvation = 3.588619 kcal Electronic energy + Delta-G solvation = -14110.262373 eV Core-core repulsion = 11547.242873 eV Total energy + Delta-G solvation = -2563.019500 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.17170 -39.49129 -36.64427 -34.69559 -33.84549 -32.96299 -30.82827 -28.52256 -27.39679 -23.69432 -23.34152 -22.03201 -19.80883 -18.39935 -17.96251 -17.11339 -16.71992 -16.32418 -15.77916 -15.70675 -14.88479 -14.61733 -14.55955 -13.78711 -13.65913 -13.27467 -13.00196 -12.79732 -12.73372 -12.65847 -12.13444 -12.07632 -10.96868 -10.67044 -10.37721 -10.10055 -9.94944 -8.39309 -8.20270 -6.93061 0.39440 0.60095 1.35264 1.43934 1.48461 1.59870 2.27037 2.37638 2.98672 3.15470 3.52097 3.97294 4.04807 4.24921 4.42935 4.64673 4.78642 4.85929 4.88567 5.24380 5.26293 5.31523 5.42924 5.47337 5.87030 6.01804 6.36610 6.70550 6.77753 7.29675 7.40247 8.36559 8.56594 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.048247 B = 0.006134 C = 0.005458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.204861 B = 4563.872958 C = 5128.932771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.157 3.843 3 C -0.242 4.242 4 C -0.020 4.020 5 C -0.261 4.261 6 C 0.385 3.615 7 N -0.525 5.525 8 N -0.551 5.551 9 C 0.538 3.462 10 O -0.629 6.629 11 C -0.562 4.562 12 H 0.092 0.908 13 C 0.031 3.969 14 N -0.817 5.817 15 Si 1.007 2.993 16 H -0.253 1.253 17 H -0.271 1.271 18 H -0.253 1.253 19 N -0.583 5.583 20 H 0.087 0.913 21 H 0.064 0.936 22 H 0.104 0.896 23 H 0.164 0.836 24 H 0.171 0.829 25 H 0.141 0.859 26 H 0.429 0.571 27 H 0.418 0.582 28 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.513 14.138 -0.014 16.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.019 3.981 3 C -0.265 4.265 4 C -0.045 4.045 5 C -0.287 4.287 6 C 0.149 3.851 7 N -0.249 5.249 8 N -0.300 5.300 9 C 0.344 3.656 10 O -0.515 6.515 11 C -0.600 4.600 12 H 0.110 0.890 13 C -0.185 4.185 14 N -0.446 5.446 15 Si 0.825 3.175 16 H -0.177 1.177 17 H -0.196 1.196 18 H -0.177 1.177 19 N -0.304 5.304 20 H 0.105 0.895 21 H 0.083 0.917 22 H 0.122 0.878 23 H 0.182 0.818 24 H 0.188 0.812 25 H 0.159 0.841 26 H 0.271 0.729 27 H 0.258 0.742 28 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.006 13.037 -0.012 15.299 hybrid contribution 0.580 -0.111 -0.010 0.591 sum -7.425 12.926 -0.023 14.907 Atomic orbital electron populations 1.20805 0.86971 1.04144 1.03816 1.21590 0.97945 0.87460 0.91128 1.21947 0.94999 0.99278 1.10234 1.21658 0.94612 0.97384 0.90856 1.21379 1.01378 0.91369 1.14597 1.18639 0.89580 0.84437 0.92456 1.43382 1.06342 0.95348 1.79872 1.45174 1.07027 0.95965 1.81818 1.18912 0.87780 0.81977 0.76967 1.90552 1.15823 1.86851 1.58281 1.21201 0.94765 0.88908 1.55095 0.88999 1.27017 0.96072 1.04471 0.90971 1.70160 1.11027 1.28003 1.35365 0.84939 0.77981 0.74153 0.80435 1.17695 1.19589 1.17711 1.66861 1.07669 1.32369 1.23501 0.89492 0.91736 0.87786 0.81827 0.81189 0.84087 0.72871 0.74182 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.96 10.17 71.23 0.72 -1.24 15 2 C 0.16 4.33 6.78 42.50 0.29 4.62 15 3 C -0.24 -5.24 9.73 22.37 0.22 -5.02 15 4 C -0.02 -0.43 10.17 22.44 0.23 -0.20 15 5 C -0.26 -7.61 9.94 22.50 0.22 -7.38 15 6 C 0.39 14.46 7.59 133.05 1.01 15.48 15 7 N -0.52 -23.35 6.42 -55.44 -0.36 -23.71 15 8 N -0.55 -27.76 6.28 -176.62 -1.11 -28.87 15 9 C 0.54 32.23 7.86 86.36 0.68 32.91 15 10 O -0.63 -42.19 14.86 -4.33 -0.06 -42.26 15 11 C -0.56 -32.27 9.54 24.83 0.24 -32.03 15 12 H 0.09 4.74 7.85 -2.91 -0.02 4.72 15 13 C 0.03 1.71 5.50 85.30 0.47 2.18 15 14 N -0.82 -49.59 11.83 21.84 0.26 -49.33 15 15 Si 1.01 40.60 29.56 68.60 2.03 42.63 15 16 H -0.25 -9.61 7.11 99.48 0.71 -8.90 15 17 H -0.27 -10.46 7.11 99.48 0.71 -9.76 15 18 H -0.25 -9.61 7.11 99.48 0.71 -8.91 15 19 N -0.58 -21.15 9.28 -181.34 -1.68 -22.83 15 20 H 0.09 1.52 8.14 -2.39 -0.02 1.50 15 21 H 0.06 1.42 8.14 -2.39 -0.02 1.40 15 22 H 0.10 1.35 8.08 -2.38 -0.02 1.33 15 23 H 0.16 2.26 8.06 -2.91 -0.02 2.23 15 24 H 0.17 2.31 8.06 -2.91 -0.02 2.28 15 25 H 0.14 3.62 8.06 -2.91 -0.02 3.59 15 26 H 0.43 19.18 7.99 -213.33 -1.70 17.48 15 27 H 0.42 19.70 7.93 -213.32 -1.69 18.01 15 28 H 0.28 15.24 8.29 -92.71 -0.77 14.47 15 Total: -1.00 -76.58 257.42 0.95 -75.63 By element: Atomic # 1 Polarization: 41.64 SS G_CDS: -2.20 Total: 39.44 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: 4.08 Total: 9.30 kcal Atomic # 7 Polarization: -121.85 SS G_CDS: -2.89 Total: -124.74 kcal Atomic # 8 Polarization: -42.19 SS G_CDS: -0.06 Total: -42.26 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Total: -76.58 0.95 -75.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001633577334.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.217 kcal (2) G-P(sol) polarization free energy of solvation -76.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds