Wall clock time and date at job start Mon Mar 30 2020 02:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.39032 * 119.99678 * 2 1 4 4 C 1.39076 * 119.64562 * 0.02562 * 3 2 1 5 5 C 1.39594 * 118.92209 * 180.23215 * 4 3 2 6 6 C 1.48006 * 120.89090 * 179.72407 * 5 4 3 7 7 O 1.21560 * 119.99773 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99915 * 180.02562 * 6 5 4 9 9 C 1.36804 * 119.99424 * 180.02562 * 8 6 5 10 10 H 1.07999 * 120.00473 * 359.97438 * 9 8 6 11 11 C 1.39109 * 119.99443 * 179.97438 * 9 8 6 12 12 N 1.31327 * 119.99723 * 179.97438 * 11 9 8 13 13 Si 1.86795 * 120.00313 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47049 * 90.00207 * 13 11 9 15 15 H 1.48498 * 109.47278 * 210.00219 * 13 11 9 16 16 H 1.48506 * 109.47012 * 330.00711 * 13 11 9 17 17 C 1.40106 * 118.22063 * 359.50563 * 5 4 3 18 18 C 1.37911 * 119.16845 * 0.49406 * 17 5 4 19 19 N 1.31946 * 121.00637 * 359.74768 * 18 17 5 20 20 H 1.08994 * 109.46970 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47241 * 300.00540 * 1 2 3 22 22 H 1.08996 * 109.47098 * 59.99974 * 1 2 3 23 23 H 0.96992 * 120.00193 * 179.97438 * 2 1 3 24 24 H 1.08002 * 120.53555 * 359.95039 * 4 3 2 25 25 H 0.96998 * 120.00381 * 359.97438 * 8 6 5 26 26 H 0.97003 * 119.99974 * 179.97438 * 12 11 9 27 27 H 1.08003 * 120.41739 * 180.23233 * 17 5 4 28 28 H 1.07999 * 119.49646 * 179.76500 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1601 1.2041 0.0000 4 6 1.4572 2.4042 0.0005 5 6 2.1703 3.6042 -0.0044 6 6 1.4666 4.9063 -0.0102 7 8 0.2515 4.9404 -0.0102 8 7 2.1731 6.0540 -0.0154 9 6 1.5225 7.2575 -0.0202 10 1 0.4429 7.2878 -0.0202 11 6 2.2517 8.4421 -0.0251 12 7 1.6272 9.5974 -0.0302 13 14 4.1189 8.3897 -0.0244 14 1 4.6140 8.3699 -1.4243 15 1 4.6476 9.5908 0.6706 16 1 4.5795 7.1667 0.6809 17 6 3.5701 3.5431 0.0009 18 6 4.1891 2.3108 0.0004 19 7 3.4836 1.1958 0.0000 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.9500 -0.8400 0.0004 24 1 0.3772 2.4075 0.0002 25 1 3.1426 6.0268 -0.0151 26 1 2.1356 10.4236 -0.0333 27 1 4.1569 4.4498 0.0011 28 1 5.2678 2.2575 0.0006 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307281560.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:30 Heat of formation + Delta-G solvation = -14.977440 kcal Electronic energy + Delta-G solvation = -14294.354986 eV Core-core repulsion = 11730.530401 eV Total energy + Delta-G solvation = -2563.824585 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 221.090 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.45927 -39.91743 -36.70329 -36.22681 -34.08184 -33.27938 -30.92603 -27.77116 -27.02193 -24.86998 -23.31734 -21.53886 -20.82893 -18.68620 -18.18486 -17.13327 -16.57005 -16.41493 -15.97884 -15.61744 -15.36314 -15.24965 -14.89288 -14.71599 -14.19588 -14.06528 -13.06197 -12.98385 -12.78117 -12.48255 -12.03003 -11.66034 -11.27416 -10.98021 -10.71990 -10.40681 -10.38495 -8.70978 -8.53797 -6.11748 -0.15487 0.35007 1.27874 1.34883 1.42244 2.02028 2.16227 2.21186 2.66934 2.90034 3.19340 3.77045 3.84092 4.05403 4.17711 4.24746 4.46340 4.62191 4.75747 4.86823 4.92120 5.25077 5.40048 5.54166 5.82147 6.00182 6.43539 6.61944 6.70645 7.16122 7.20679 7.75485 8.62306 Molecular weight = 221.09amu Principal moments of inertia in cm(-1) A = 0.044860 B = 0.007410 C = 0.006382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.009166 B = 3777.569954 C = 4386.429079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.721 5.721 3 C 0.394 3.606 4 C -0.207 4.207 5 C -0.036 4.036 6 C 0.471 3.529 7 O -0.623 6.623 8 N -0.558 5.558 9 C -0.336 4.336 10 H 0.062 0.938 11 C -0.005 4.005 12 N -0.914 5.914 13 Si 0.957 3.043 14 H -0.250 1.250 15 H -0.266 1.266 16 H -0.230 1.230 17 C -0.222 4.222 18 C 0.158 3.842 19 N -0.547 5.547 20 H 0.115 0.885 21 H 0.049 0.951 22 H 0.049 0.951 23 H 0.415 0.585 24 H 0.129 0.871 25 H 0.392 0.608 26 H 0.286 0.714 27 H 0.147 0.853 28 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.486 -16.886 0.078 18.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.355 5.355 3 C 0.158 3.842 4 C -0.234 4.234 5 C -0.047 4.047 6 C 0.261 3.739 7 O -0.511 6.511 8 N -0.197 5.197 9 C -0.465 4.465 10 H 0.080 0.920 11 C -0.207 4.207 12 N -0.552 5.552 13 Si 0.776 3.224 14 H -0.174 1.174 15 H -0.190 1.190 16 H -0.153 1.153 17 C -0.246 4.246 18 C 0.001 3.999 19 N -0.266 5.266 20 H 0.133 0.867 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.252 0.748 24 H 0.147 0.853 25 H 0.229 0.771 26 H 0.096 0.904 27 H 0.165 0.835 28 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 7.860 -17.373 0.076 19.068 hybrid contribution 0.009 1.289 0.001 1.289 sum 7.868 -16.084 0.078 17.905 Atomic orbital electron populations 1.21786 0.77643 1.04751 1.01212 1.44257 1.06565 1.04272 1.80398 1.18360 0.88430 0.86635 0.90805 1.21406 1.01208 0.90853 1.09915 1.20150 0.94852 0.92420 0.97310 1.18372 0.87025 0.84399 0.84141 1.90587 1.15495 1.87728 1.57252 1.41890 1.08634 1.04956 1.64199 1.19110 0.93571 0.82951 1.50891 0.91973 1.26197 1.05937 0.93395 0.95123 1.69735 1.39500 0.98640 1.47366 0.85481 0.75730 0.80620 0.80617 1.17408 1.19001 1.15293 1.22216 0.92667 1.01320 1.08373 1.22916 1.01236 0.85224 0.90555 1.67162 1.05660 1.32891 1.20899 0.86706 0.93201 0.93211 0.74846 0.85340 0.77113 0.90431 0.83540 0.78043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.60 9.92 127.77 1.27 2.87 15 2 N -0.72 -15.79 5.89 -366.61 -2.16 -17.95 15 3 C 0.39 11.65 7.65 133.05 1.02 12.67 15 4 C -0.21 -7.43 8.89 22.80 0.20 -7.23 15 5 C -0.04 -1.42 5.91 -19.91 -0.12 -1.53 15 6 C 0.47 23.65 7.74 86.83 0.67 24.32 15 7 O -0.62 -36.93 16.01 -3.90 -0.06 -36.99 15 8 N -0.56 -27.70 5.04 -309.50 -1.56 -29.26 15 9 C -0.34 -19.85 10.16 84.13 0.85 -18.99 15 10 H 0.06 4.33 7.38 -2.91 -0.02 4.31 15 11 C 0.00 -0.27 5.50 84.98 0.47 0.20 15 12 N -0.91 -53.65 13.95 21.69 0.30 -53.35 15 13 Si 0.96 37.47 27.74 68.60 1.90 39.37 15 14 H -0.25 -9.20 7.11 99.48 0.71 -8.49 15 15 H -0.27 -10.12 7.11 99.48 0.71 -9.42 15 16 H -0.23 -7.60 6.52 99.48 0.65 -6.95 15 17 C -0.22 -6.72 9.61 22.65 0.22 -6.51 15 18 C 0.16 3.92 11.16 84.60 0.94 4.87 15 19 N -0.55 -15.26 10.37 -193.43 -2.01 -17.27 15 20 H 0.11 1.14 8.14 -2.39 -0.02 1.12 15 21 H 0.05 0.98 7.93 -2.39 -0.02 0.96 15 22 H 0.05 0.98 7.93 -2.39 -0.02 0.96 15 23 H 0.41 7.19 8.95 -92.71 -0.83 6.36 15 24 H 0.13 4.81 6.38 -2.91 -0.02 4.80 15 25 H 0.39 16.13 3.89 -92.71 -0.36 15.76 15 26 H 0.29 15.14 8.31 -92.71 -0.77 14.37 15 27 H 0.15 3.83 6.53 -2.91 -0.02 3.81 15 28 H 0.20 3.10 8.06 -2.91 -0.02 3.08 15 Total: -1.00 -76.01 249.77 1.91 -74.10 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: -0.04 Total: 30.69 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 5.53 Total: 10.66 kcal Atomic # 7 Polarization: -112.41 SS G_CDS: -5.42 Total: -117.83 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -0.06 Total: -36.99 kcal Atomic # 14 Polarization: 37.47 SS G_CDS: 1.90 Total: 39.37 kcal Total: -76.01 1.91 -74.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307281560.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.122 kcal (2) G-P(sol) polarization free energy of solvation -76.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds