Wall clock time and date at job start Mon Mar 30 2020 03:38:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47191 * 2 1 4 4 H 1.09000 * 109.47016 * 55.00325 * 3 2 1 5 5 N 1.46900 * 109.47538 * 295.00543 * 3 2 1 6 6 C 1.50704 * 109.47028 * 175.00222 * 3 2 1 7 7 C 1.38301 * 119.92895 * 79.73091 * 6 3 2 8 8 C 1.38099 * 120.06593 * 179.72532 * 7 6 3 9 9 C 1.38874 * 119.93212 * 0.52471 * 8 7 6 10 10 O 1.35757 * 120.07114 * 179.72549 * 9 8 7 11 11 C 1.34831 * 116.99927 * 174.48803 * 10 9 8 12 12 H 1.08001 * 119.99895 * 5.05068 * 11 10 9 13 13 C 1.38650 * 119.99524 * 185.05990 * 11 10 9 14 14 N 1.31549 * 120.00505 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99616 * 179.97438 * 13 11 10 16 16 H 1.48492 * 109.47166 * 59.99872 * 15 13 11 17 17 H 1.48495 * 109.46827 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.47254 * 299.99535 * 15 13 11 19 19 C 1.38881 * 119.86404 * 359.74902 * 9 8 7 20 20 C 1.38104 * 119.92945 * 359.97438 * 19 9 8 21 21 H 1.09001 * 109.47366 * 59.99516 * 1 2 3 22 22 H 1.08995 * 109.47235 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47170 * 299.99795 * 1 2 3 24 24 H 1.08999 * 109.46833 * 240.00236 * 2 1 3 25 25 H 1.09001 * 109.47366 * 120.00484 * 2 1 3 26 26 H 1.00900 * 110.99515 * 299.99796 * 5 3 2 27 27 H 1.00894 * 110.99931 * 63.95127 * 5 3 2 28 28 H 1.07996 * 119.96786 * 359.97270 * 7 6 3 29 29 H 1.08001 * 120.03511 * 180.26654 * 8 7 6 30 30 H 0.97006 * 120.00630 * 179.97438 * 14 13 11 31 31 H 1.08000 * 120.04035 * 179.97438 * 19 9 8 32 32 H 1.07998 * 119.96916 * 179.97438 * 20 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 7 1.6513 2.0994 -1.2551 6 6 3.5419 1.4442 0.1238 7 6 4.3262 1.1972 -0.9882 8 6 5.7029 1.2037 -0.8792 9 6 6.2995 1.4479 0.3509 10 8 7.6524 1.4494 0.4624 11 6 8.1678 1.8053 1.6564 12 1 7.5116 1.9932 2.4934 13 6 9.5401 1.9301 1.8096 14 7 10.3394 1.7009 0.7902 15 14 10.2541 2.4239 3.4637 16 1 9.8685 1.4209 4.4886 17 1 11.7345 2.4860 3.3651 18 1 9.7271 3.7567 3.8525 19 6 5.5091 1.6900 1.4669 20 6 4.1330 1.6878 1.3502 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8901 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 2.0421 1.6180 -2.0512 27 1 0.6476 2.1685 -1.3313 28 1 3.8617 1.0029 -1.9436 29 1 6.3149 1.0150 -1.7488 30 1 11.2996 1.7886 0.8973 31 1 5.9700 1.8798 2.4250 32 1 3.5177 1.8756 2.2177 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037697907.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:02 Heat of formation + Delta-G solvation = -36.312205 kcal Electronic energy + Delta-G solvation = -14463.660474 eV Core-core repulsion = 12002.451087 eV Total energy + Delta-G solvation = -2461.209387 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.85909 -39.02282 -36.64081 -34.25164 -31.94718 -31.65027 -30.37565 -27.54957 -25.81684 -23.67030 -22.84696 -21.27205 -19.76026 -18.82327 -17.34845 -16.50970 -16.13568 -15.78829 -15.53253 -15.44667 -15.16180 -14.71483 -14.47940 -14.12362 -13.60856 -13.43307 -13.14136 -12.89051 -12.52670 -12.35178 -12.15236 -12.14011 -11.73351 -11.70111 -11.16352 -10.77652 -9.77141 -9.55461 -8.85294 -8.46304 -6.14708 0.60526 0.71770 1.34982 1.46041 1.51545 2.18608 2.82467 3.16058 3.52571 3.77365 3.96776 4.07706 4.14902 4.24616 4.26384 4.54321 4.61123 4.70542 4.80448 4.90998 5.06875 5.12706 5.17338 5.25835 5.30903 5.40214 5.58434 5.72433 5.83073 6.03523 6.22601 6.35207 6.72872 6.98183 7.79572 8.76888 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.060594 B = 0.005684 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 461.983811 B = 4925.125344 C = 5181.612751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.152 4.152 3 C 0.151 3.849 4 H 0.087 0.913 5 N -0.847 5.847 6 C -0.148 4.148 7 C -0.056 4.056 8 C -0.205 4.205 9 C 0.109 3.891 10 O -0.234 6.234 11 C -0.416 4.416 12 H 0.101 0.899 13 C -0.023 4.023 14 N -0.922 5.922 15 Si 1.019 2.981 16 H -0.257 1.257 17 H -0.271 1.271 18 H -0.258 1.258 19 C -0.241 4.241 20 C -0.069 4.069 21 H 0.063 0.937 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.343 0.657 27 H 0.351 0.649 28 H 0.143 0.857 29 H 0.112 0.888 30 H 0.273 0.727 31 H 0.118 0.882 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.580 -1.578 0.306 17.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.191 4.191 3 C 0.040 3.960 4 H 0.105 0.895 5 N -0.379 5.379 6 C -0.149 4.149 7 C -0.074 4.074 8 C -0.224 4.224 9 C 0.058 3.942 10 O -0.141 6.141 11 C -0.492 4.492 12 H 0.118 0.882 13 C -0.221 4.221 14 N -0.560 5.560 15 Si 0.838 3.162 16 H -0.181 1.181 17 H -0.195 1.195 18 H -0.182 1.182 19 C -0.260 4.260 20 C -0.087 4.087 21 H 0.082 0.918 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.157 0.843 27 H 0.166 0.834 28 H 0.161 0.839 29 H 0.130 0.870 30 H 0.082 0.918 31 H 0.136 0.864 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.817 -0.992 0.365 16.851 hybrid contribution 0.518 -0.782 0.316 0.990 sum -16.299 -1.774 0.680 16.409 Atomic orbital electron populations 1.21779 0.94067 1.02360 1.02411 1.22310 0.97167 0.97279 1.02364 1.20090 0.89153 0.92960 0.93803 0.89494 1.58885 1.16786 1.58497 1.03711 1.19713 0.95924 1.06233 0.93043 1.20698 0.90845 0.96831 0.99003 1.20458 0.95892 1.11133 0.94934 1.19941 0.84135 0.94829 0.95247 1.83941 1.16555 1.77550 1.36051 1.21787 0.92012 1.48252 0.87111 0.88204 1.26598 0.95035 0.96496 1.03922 1.70178 1.04567 1.48050 1.33216 0.84646 0.77307 0.79464 0.74772 1.18110 1.19547 1.18221 1.21239 0.95063 1.11290 0.98441 1.20944 0.92780 0.96974 0.98013 0.91812 0.92122 0.92126 0.92189 0.92311 0.84310 0.83391 0.83926 0.87035 0.91841 0.86374 0.84254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.68 71.98 0.70 -1.39 16 2 C -0.15 -2.93 5.55 30.59 0.17 -2.76 16 3 C 0.15 3.45 3.04 44.17 0.13 3.58 16 4 H 0.09 1.90 8.00 -2.39 -0.02 1.88 16 5 N -0.85 -17.00 9.01 -171.80 -1.55 -18.55 16 6 C -0.15 -4.71 4.96 -19.83 -0.10 -4.81 16 7 C -0.06 -1.91 9.28 22.25 0.21 -1.70 16 8 C -0.20 -9.02 9.99 22.39 0.22 -8.80 16 9 C 0.11 5.59 6.65 22.58 0.15 5.74 16 10 O -0.23 -14.49 9.76 -22.83 -0.22 -14.71 16 11 C -0.42 -24.77 9.49 67.92 0.64 -24.13 16 12 H 0.10 5.46 5.20 -2.91 -0.02 5.45 16 13 C -0.02 -1.34 5.49 84.83 0.47 -0.88 16 14 N -0.92 -57.53 13.67 21.61 0.30 -57.24 16 15 Si 1.02 43.49 29.55 68.60 2.03 45.51 16 16 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 17 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 18 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 19 C -0.24 -10.83 9.17 22.39 0.21 -10.63 16 20 C -0.07 -2.44 9.66 22.25 0.21 -2.23 16 21 H 0.06 0.74 6.87 -2.39 -0.02 0.72 16 22 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.06 0.80 8.14 -2.38 -0.02 0.79 16 24 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.34 6.39 7.35 -89.69 -0.66 5.74 16 27 H 0.35 5.25 7.55 -89.70 -0.68 4.57 16 28 H 0.14 3.85 6.67 -2.91 -0.02 3.83 16 29 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 30 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 31 H 0.12 5.38 5.64 -2.91 -0.02 5.36 16 32 H 0.14 3.98 8.03 -2.91 -0.02 3.96 16 Total: -1.00 -70.81 270.52 3.37 -67.44 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: -0.20 Total: 25.55 kcal Atomic # 6 Polarization: -51.02 SS G_CDS: 3.01 Total: -48.01 kcal Atomic # 7 Polarization: -74.53 SS G_CDS: -1.25 Total: -75.79 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.22 Total: -14.71 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -70.81 3.37 -67.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037697907.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.129 kcal (2) G-P(sol) polarization free energy of solvation -70.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds