Wall clock time and date at job start Mon Mar 30 2020 04:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46893 * 111.00192 * 2 1 4 4 H 1.09006 * 109.46860 * 325.00324 * 3 2 1 5 5 C 1.53003 * 109.47541 * 84.99674 * 3 2 1 6 6 C 1.50697 * 109.47208 * 205.00226 * 3 2 1 7 7 C 1.38124 * 120.03693 * 339.99199 * 6 3 2 8 8 C 1.38277 * 120.07194 * 180.02562 * 7 6 3 9 9 C 1.38324 * 120.13888 * 0.02562 * 8 7 6 10 10 C 1.38085 * 120.06744 * 359.97438 * 9 8 7 11 11 C 1.38862 * 120.03744 * 160.02108 * 6 3 2 12 12 O 1.35759 * 120.06584 * 359.95180 * 11 6 3 13 13 C 1.34823 * 116.99944 * 174.42275 * 12 11 6 14 14 H 1.08006 * 120.00076 * 5.07035 * 13 12 11 15 15 C 1.38657 * 120.00257 * 185.06239 * 13 12 11 16 16 N 1.31556 * 119.99552 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00082 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46833 * 90.00131 * 17 15 13 19 19 H 1.48499 * 109.46893 * 210.00143 * 17 15 13 20 20 H 1.48499 * 109.47148 * 330.00352 * 17 15 13 21 21 H 1.08991 * 109.47130 * 60.00483 * 1 2 3 22 22 H 1.09005 * 109.46870 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46835 * 299.99988 * 1 2 3 24 24 H 1.00906 * 111.00031 * 123.94806 * 2 1 3 25 25 H 1.09007 * 109.46609 * 59.99891 * 5 3 2 26 26 H 1.08996 * 109.47188 * 180.02562 * 5 3 2 27 27 H 1.09000 * 109.47186 * 300.00414 * 5 3 2 28 28 H 1.07999 * 119.96168 * 359.75197 * 7 6 3 29 29 H 1.07995 * 119.92863 * 180.02562 * 8 7 6 30 30 H 1.07998 * 119.96739 * 180.02562 * 9 8 7 31 31 H 1.08000 * 120.03452 * 180.02562 * 10 9 8 32 32 H 0.97003 * 119.99994 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 1 1.3397 2.0123 -0.5894 5 6 2.0609 1.8927 1.4370 6 6 3.3776 1.3788 -0.6005 7 6 4.1104 0.2097 -0.6635 8 6 5.3789 0.2158 -1.2139 9 6 5.9183 1.3921 -1.7025 10 6 5.1908 2.5643 -1.6424 11 6 3.9162 2.5612 -1.0906 12 8 3.1983 3.7119 -1.0304 13 6 3.8219 4.8432 -1.4164 14 1 4.8182 4.7963 -1.8308 15 6 3.1841 6.0670 -1.2816 16 7 1.9707 6.1242 -0.7765 17 14 4.0478 7.6344 -1.8170 18 1 3.7357 7.9092 -3.2427 19 1 3.5795 8.7683 -0.9802 20 1 5.5148 7.4717 -1.6540 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8306 -0.5261 0.7815 25 1 2.7166 1.2517 2.0265 26 1 2.4511 2.9104 1.4369 27 1 1.0611 1.8872 1.8713 28 1 3.6939 -0.7093 -0.2785 29 1 5.9497 -0.6997 -1.2624 30 1 6.9091 1.3937 -2.1321 31 1 5.6123 3.4823 -2.0244 32 1 1.5246 6.9804 -0.6818 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037706678.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:12 Heat of formation + Delta-G solvation = -3.662294 kcal Electronic energy + Delta-G solvation = -15022.568984 eV Core-core repulsion = 12562.775404 eV Total energy + Delta-G solvation = -2459.793580 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.22081 -36.79732 -35.72773 -32.27030 -31.01645 -29.07295 -28.04178 -25.40753 -24.70452 -22.67390 -21.15210 -19.92399 -17.86604 -16.94654 -15.45629 -14.98436 -14.56963 -14.30611 -13.68981 -13.67333 -13.56216 -13.19905 -12.48288 -12.33743 -12.06327 -11.77393 -11.64030 -11.31531 -11.20277 -10.93366 -10.76506 -10.55484 -10.33438 -10.22647 -9.25176 -8.80448 -8.10107 -7.90197 -7.11264 -6.42097 -4.00100 2.28553 2.48392 3.14330 3.15201 3.19559 3.99232 4.56981 4.70497 5.12468 5.34937 5.48499 5.58300 5.71343 5.77945 5.86833 5.94426 5.97631 6.12314 6.14376 6.36252 6.45806 6.51583 6.75254 6.82866 7.01024 7.13193 7.24459 7.44172 7.47388 7.63900 7.73500 7.94485 8.03809 9.04597 9.75278 10.75988 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026628 B = 0.009633 C = 0.007419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.283610 B = 2905.845684 C = 3773.091075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.688 5.688 3 C 0.140 3.860 4 H 0.088 0.912 5 C -0.169 4.169 6 C -0.146 4.146 7 C -0.057 4.057 8 C -0.216 4.216 9 C -0.079 4.079 10 C -0.236 4.236 11 C 0.155 3.845 12 O -0.177 6.177 13 C -0.390 4.390 14 H 0.090 0.910 15 C 0.040 3.960 16 N -0.864 5.864 17 Si 0.938 3.062 18 H -0.274 1.274 19 H -0.278 1.278 20 H -0.268 1.268 21 H 0.064 0.936 22 H 0.060 0.940 23 H 0.020 0.980 24 H 0.334 0.666 25 H 0.047 0.953 26 H 0.075 0.925 27 H 0.045 0.955 28 H 0.116 0.884 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.125 0.875 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.226 -7.781 1.873 8.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.317 5.317 3 C 0.031 3.969 4 H 0.106 0.894 5 C -0.228 4.228 6 C -0.148 4.148 7 C -0.075 4.075 8 C -0.235 4.235 9 C -0.098 4.098 10 C -0.255 4.255 11 C 0.102 3.898 12 O -0.080 6.080 13 C -0.467 4.467 14 H 0.108 0.892 15 C -0.164 4.164 16 N -0.500 5.500 17 Si 0.763 3.237 18 H -0.200 1.200 19 H -0.203 1.203 20 H -0.193 1.193 21 H 0.083 0.917 22 H 0.079 0.921 23 H 0.038 0.962 24 H 0.151 0.849 25 H 0.067 0.933 26 H 0.094 0.906 27 H 0.064 0.936 28 H 0.134 0.866 29 H 0.121 0.879 30 H 0.122 0.878 31 H 0.143 0.857 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.847 -7.611 1.310 7.770 hybrid contribution 0.368 1.125 0.558 1.308 sum 1.214 -6.487 1.868 6.859 Atomic orbital electron populations 1.22176 0.88406 1.00947 1.00525 1.60564 1.07162 1.14792 1.49221 1.20090 0.93688 0.88003 0.95108 0.89383 1.22346 1.00441 1.03329 0.96662 1.18827 0.96805 0.91723 1.07428 1.20473 0.93139 0.96401 0.97530 1.20611 0.97240 0.97406 1.08281 1.20736 0.98267 0.92681 0.98078 1.21111 0.96367 0.99009 1.09012 1.19163 0.90264 0.87614 0.92798 1.83957 1.37490 1.12215 1.74377 1.21303 1.01148 0.82206 1.42013 0.89249 1.25226 0.96036 0.98345 0.96801 1.70029 1.11963 1.26231 1.41757 0.85758 0.79173 0.80145 0.78642 1.19966 1.20343 1.19270 0.91714 0.92076 0.96193 0.84858 0.93345 0.90627 0.93572 0.86583 0.87888 0.87789 0.85715 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.50 60.07 0.63 1.04 16 2 N -0.69 -10.95 5.44 -115.25 -0.63 -11.58 16 3 C 0.14 2.73 2.46 -68.87 -0.17 2.56 16 4 H 0.09 1.97 7.51 -51.93 -0.39 1.58 16 5 C -0.17 -3.11 9.14 37.16 0.34 -2.77 16 6 C -0.15 -3.11 5.10 -104.43 -0.53 -3.65 16 7 C -0.06 -1.07 9.32 -39.61 -0.37 -1.44 16 8 C -0.22 -3.94 10.04 -39.54 -0.40 -4.34 16 9 C -0.08 -1.53 10.04 -39.61 -0.40 -1.92 16 10 C -0.24 -5.28 9.17 -39.39 -0.36 -5.64 16 11 C 0.16 3.77 6.62 -39.11 -0.26 3.52 16 12 O -0.18 -4.92 8.91 0.04 0.00 -4.92 16 13 C -0.39 -10.85 9.49 30.89 0.29 -10.56 16 14 H 0.09 2.33 5.20 -52.48 -0.27 2.06 16 15 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 16 N -0.86 -25.00 13.67 55.48 0.76 -24.24 16 17 Si 0.94 20.59 29.55 -169.99 -5.02 15.57 16 18 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 19 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 H 0.06 0.95 8.05 -51.93 -0.42 0.53 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.02 0.26 7.44 -51.93 -0.39 -0.12 16 24 H 0.33 4.66 8.09 -39.29 -0.32 4.34 16 25 H 0.05 0.80 8.13 -51.93 -0.42 0.37 16 26 H 0.07 1.64 8.06 -51.93 -0.42 1.22 16 27 H 0.05 0.76 7.45 -51.93 -0.39 0.38 16 28 H 0.12 1.90 6.84 -52.49 -0.36 1.54 16 29 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 30 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 31 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 32 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 271.26 15.07 4.09 4.09 Total: -1.00 -29.53 271.26 -6.19 -35.73 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -4.07 Total: 7.57 kcal Atomic # 6 Polarization: -20.89 SS G_CDS: -1.32 Total: -22.21 kcal Atomic # 7 Polarization: -35.95 SS G_CDS: 0.13 Total: -35.81 kcal Atomic # 8 Polarization: -4.92 SS G_CDS: 0.00 Total: -4.92 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.53 -6.19 -35.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037706678.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.067 kcal (2) G-P(sol) polarization free energy of solvation -29.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds