Wall clock time and date at job start Mon Mar 30 2020 04:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46893 * 111.00192 * 2 1 4 4 H 1.09006 * 109.46860 * 325.00324 * 3 2 1 5 5 C 1.53003 * 109.47541 * 84.99674 * 3 2 1 6 6 C 1.50697 * 109.47208 * 205.00226 * 3 2 1 7 7 C 1.38124 * 120.03693 * 339.99199 * 6 3 2 8 8 C 1.38277 * 120.07194 * 180.02562 * 7 6 3 9 9 C 1.38324 * 120.13888 * 0.02562 * 8 7 6 10 10 C 1.38085 * 120.06744 * 359.97438 * 9 8 7 11 11 C 1.38862 * 120.03744 * 160.02108 * 6 3 2 12 12 O 1.35759 * 120.06584 * 359.95180 * 11 6 3 13 13 C 1.34823 * 116.99944 * 174.42275 * 12 11 6 14 14 H 1.08006 * 120.00076 * 5.07035 * 13 12 11 15 15 C 1.38657 * 120.00257 * 185.06239 * 13 12 11 16 16 N 1.31556 * 119.99552 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00082 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46833 * 90.00131 * 17 15 13 19 19 H 1.48499 * 109.46893 * 210.00143 * 17 15 13 20 20 H 1.48499 * 109.47148 * 330.00352 * 17 15 13 21 21 H 1.08991 * 109.47130 * 60.00483 * 1 2 3 22 22 H 1.09005 * 109.46870 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46835 * 299.99988 * 1 2 3 24 24 H 1.00906 * 111.00031 * 123.94806 * 2 1 3 25 25 H 1.09007 * 109.46609 * 59.99891 * 5 3 2 26 26 H 1.08996 * 109.47188 * 180.02562 * 5 3 2 27 27 H 1.09000 * 109.47186 * 300.00414 * 5 3 2 28 28 H 1.07999 * 119.96168 * 359.75197 * 7 6 3 29 29 H 1.07995 * 119.92863 * 180.02562 * 8 7 6 30 30 H 1.07998 * 119.96739 * 180.02562 * 9 8 7 31 31 H 1.08000 * 120.03452 * 180.02562 * 10 9 8 32 32 H 0.97003 * 119.99994 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 1 1.3397 2.0123 -0.5894 5 6 2.0609 1.8927 1.4370 6 6 3.3776 1.3788 -0.6005 7 6 4.1104 0.2097 -0.6635 8 6 5.3789 0.2158 -1.2139 9 6 5.9183 1.3921 -1.7025 10 6 5.1908 2.5643 -1.6424 11 6 3.9162 2.5612 -1.0906 12 8 3.1983 3.7119 -1.0304 13 6 3.8219 4.8432 -1.4164 14 1 4.8182 4.7963 -1.8308 15 6 3.1841 6.0670 -1.2816 16 7 1.9707 6.1242 -0.7765 17 14 4.0478 7.6344 -1.8170 18 1 3.7357 7.9092 -3.2427 19 1 3.5795 8.7683 -0.9802 20 1 5.5148 7.4717 -1.6540 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8306 -0.5261 0.7815 25 1 2.7166 1.2517 2.0265 26 1 2.4511 2.9104 1.4369 27 1 1.0611 1.8872 1.8713 28 1 3.6939 -0.7093 -0.2785 29 1 5.9497 -0.6997 -1.2624 30 1 6.9091 1.3937 -2.1321 31 1 5.6123 3.4823 -2.0244 32 1 1.5246 6.9804 -0.6818 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037706678.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:12 Heat of formation + Delta-G solvation = -23.198089 kcal Electronic energy + Delta-G solvation = -15023.416120 eV Core-core repulsion = 12562.775404 eV Total energy + Delta-G solvation = -2460.640716 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.92735 -38.47879 -37.25987 -34.26573 -32.48217 -30.70569 -29.64131 -27.35197 -26.06141 -24.22717 -22.83892 -21.51367 -19.73101 -18.73437 -17.00670 -16.58996 -16.26598 -15.85577 -15.48659 -15.26048 -15.06584 -14.78086 -14.16526 -13.91900 -13.50330 -13.40509 -13.18107 -12.92309 -12.69670 -12.49209 -12.37527 -12.18859 -12.05649 -11.81192 -11.04526 -10.77891 -9.54168 -9.38700 -8.86198 -8.44277 -6.10408 0.66582 0.83270 1.34325 1.43323 1.50835 2.18396 2.88274 3.19455 3.32284 3.58980 3.97633 4.22341 4.32521 4.34468 4.36219 4.53203 4.61855 4.65245 4.79462 4.92828 4.95298 5.02445 5.16689 5.20033 5.24010 5.42394 5.70906 5.77431 5.83709 6.04379 6.15065 6.34598 6.55932 7.01410 7.83814 8.78341 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026628 B = 0.009633 C = 0.007419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.283610 B = 2905.845684 C = 3773.091075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.683 5.683 3 C 0.148 3.852 4 H 0.045 0.955 5 C -0.158 4.158 6 C -0.156 4.156 7 C -0.055 4.055 8 C -0.196 4.196 9 C -0.080 4.080 10 C -0.252 4.252 11 C 0.113 3.887 12 O -0.221 6.221 13 C -0.412 4.412 14 H 0.096 0.904 15 C -0.020 4.020 16 N -0.917 5.917 17 Si 1.013 2.987 18 H -0.265 1.265 19 H -0.271 1.271 20 H -0.255 1.255 21 H 0.047 0.953 22 H 0.094 0.906 23 H 0.024 0.976 24 H 0.351 0.649 25 H 0.072 0.928 26 H 0.031 0.969 27 H 0.061 0.939 28 H 0.149 0.851 29 H 0.148 0.852 30 H 0.139 0.861 31 H 0.114 0.886 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.791 -10.129 1.935 10.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.314 5.314 3 C 0.038 3.962 4 H 0.064 0.936 5 C -0.217 4.217 6 C -0.158 4.158 7 C -0.073 4.073 8 C -0.214 4.214 9 C -0.098 4.098 10 C -0.272 4.272 11 C 0.062 3.938 12 O -0.127 6.127 13 C -0.488 4.488 14 H 0.114 0.886 15 C -0.217 4.217 16 N -0.555 5.555 17 Si 0.833 3.167 18 H -0.190 1.190 19 H -0.196 1.196 20 H -0.179 1.179 21 H 0.066 0.934 22 H 0.112 0.888 23 H 0.042 0.958 24 H 0.170 0.830 25 H 0.091 0.909 26 H 0.050 0.950 27 H 0.080 0.920 28 H 0.166 0.834 29 H 0.165 0.835 30 H 0.157 0.843 31 H 0.132 0.868 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.436 -10.020 1.373 10.403 hybrid contribution -0.047 1.540 0.548 1.635 sum 2.390 -8.480 1.921 9.017 Atomic orbital electron populations 1.22243 0.87028 1.02854 0.99973 1.60492 1.08474 1.12348 1.50097 1.19819 0.92343 0.89432 0.94630 0.93645 1.22227 1.01635 1.01071 0.96752 1.19230 0.97845 0.91702 1.07009 1.20896 0.93299 0.96351 0.96742 1.21185 0.96791 0.98501 1.04940 1.21139 0.99447 0.91727 0.97509 1.21264 0.96231 1.00230 1.09451 1.19767 0.91559 0.87727 0.94717 1.83937 1.38972 1.13186 1.76648 1.21764 1.01686 0.83052 1.42342 0.88647 1.26449 0.96788 1.01771 0.96734 1.70176 1.13960 1.27166 1.44238 0.84667 0.78412 0.75223 0.78440 1.19011 1.19609 1.17910 0.93393 0.88788 0.95751 0.83039 0.90942 0.95001 0.91999 0.83361 0.83472 0.84274 0.86806 0.92063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.50 127.69 1.34 2.08 16 2 N -0.68 -20.44 5.44 -518.54 -2.82 -23.26 16 3 C 0.15 5.84 2.46 44.17 0.11 5.94 16 4 H 0.05 2.17 7.51 -2.38 -0.02 2.16 16 5 C -0.16 -5.90 9.14 71.98 0.66 -5.24 16 6 C -0.16 -6.65 5.10 -19.74 -0.10 -6.75 16 7 C -0.05 -1.89 9.32 22.25 0.21 -1.68 16 8 C -0.20 -6.25 10.04 22.30 0.22 -6.03 16 9 C -0.08 -2.86 10.04 22.25 0.22 -2.64 16 10 C -0.25 -11.38 9.17 22.39 0.21 -11.18 16 11 C 0.11 5.69 6.62 22.58 0.15 5.84 16 12 O -0.22 -13.17 8.91 -22.77 -0.20 -13.38 16 13 C -0.41 -24.20 9.49 67.92 0.64 -23.55 16 14 H 0.10 5.23 5.20 -2.91 -0.02 5.21 16 15 C -0.02 -1.13 5.49 84.83 0.47 -0.67 16 16 N -0.92 -56.14 13.67 21.61 0.30 -55.84 16 17 Si 1.01 43.48 29.55 68.60 2.03 45.50 16 18 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 19 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 20 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 21 H 0.05 1.41 8.05 -2.39 -0.02 1.39 16 22 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 23 H 0.02 0.61 7.44 -2.39 -0.02 0.60 16 24 H 0.35 8.55 8.09 -89.69 -0.73 7.83 16 25 H 0.07 2.30 8.13 -2.38 -0.02 2.28 16 26 H 0.03 1.45 8.06 -2.39 -0.02 1.43 16 27 H 0.06 2.06 7.45 -2.39 -0.02 2.04 16 28 H 0.15 4.13 6.84 -2.91 -0.02 4.11 16 29 H 0.15 3.51 8.06 -2.91 -0.02 3.48 16 30 H 0.14 3.95 8.06 -2.91 -0.02 3.92 16 31 H 0.11 5.25 5.64 -2.91 -0.02 5.23 16 32 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -68.89 271.26 3.82 -65.07 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 0.40 Total: 25.77 kcal Atomic # 6 Polarization: -47.99 SS G_CDS: 4.13 Total: -43.87 kcal Atomic # 7 Polarization: -76.57 SS G_CDS: -2.53 Total: -79.10 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -0.20 Total: -13.38 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -68.89 3.82 -65.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037706678.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.871 kcal (2) G-P(sol) polarization free energy of solvation -68.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds