Wall clock time and date at job start Mon Mar 30 2020 03:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47540 * 2 1 4 4 H 1.09004 * 109.47077 * 305.00040 * 3 2 1 5 5 C 1.50697 * 109.47329 * 185.00239 * 3 2 1 6 6 H 1.08005 * 119.99856 * 239.99852 * 5 3 2 7 7 C 1.37878 * 120.00360 * 59.99562 * 5 3 2 8 8 N 1.31514 * 119.99807 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00371 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46780 * 60.00229 * 9 7 5 11 11 H 1.48493 * 109.47359 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46941 * 300.00407 * 9 7 5 13 13 O 1.42899 * 109.47535 * 64.99889 * 3 2 1 14 14 C 1.35897 * 116.99933 * 266.07338 * 13 3 2 15 15 C 1.38816 * 120.01531 * 177.32943 * 14 13 3 16 16 C 1.38171 * 120.09036 * 180.02562 * 15 14 13 17 17 C 1.38158 * 120.13002 * 0.25114 * 16 15 14 18 18 C 1.38929 * 120.03406 * 359.49798 * 17 16 15 19 19 N 1.39664 * 120.04884 * 180.23356 * 18 17 16 20 20 C 1.38568 * 120.02155 * 357.34971 * 14 13 3 21 21 H 1.08998 * 109.47255 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.46783 * 300.00141 * 1 2 3 23 23 H 1.09002 * 109.47236 * 59.99724 * 1 2 3 24 24 H 1.09004 * 109.47427 * 239.99545 * 2 1 3 25 25 H 1.09002 * 109.47236 * 120.00276 * 2 1 3 26 26 H 0.96997 * 120.00361 * 179.97438 * 8 7 5 27 27 H 1.08002 * 119.95818 * 359.97438 * 15 14 13 28 28 H 1.08000 * 119.93379 * 179.97438 * 16 15 14 29 29 H 1.08005 * 119.98008 * 179.74429 * 17 16 15 30 30 H 0.96993 * 120.00361 * 180.27008 * 19 18 17 31 31 H 0.97002 * 119.99973 * 0.26651 * 19 18 17 32 32 H 1.08010 * 120.06162 * 359.95783 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8782 -1.2280 8 7 3.4062 0.3372 -2.1733 9 14 6.0050 0.8810 -1.3819 10 1 6.5975 0.1470 -0.2349 11 1 6.3978 0.2175 -2.6509 12 1 6.4995 2.2813 -1.3823 13 8 1.6621 2.0814 1.2210 14 6 0.5038 2.7921 1.2125 15 6 0.0487 3.3920 2.3787 16 6 -1.1290 4.1145 2.3720 17 6 -1.8602 4.2381 1.2063 18 6 -1.4070 3.6442 0.0349 19 7 -2.1434 3.7730 -1.1448 20 6 -0.2238 2.9180 0.0400 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8934 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 3.8292 -0.0606 -2.9502 27 1 0.6155 3.2932 3.2927 28 1 -1.4810 4.5799 3.2808 29 1 -2.7826 4.7999 1.2047 30 1 -1.8284 3.3548 -1.9613 31 1 -2.9700 4.2806 -1.1476 32 1 0.1290 2.4522 -0.8684 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038055328.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:49 Heat of formation + Delta-G solvation = -21.969285 kcal Electronic energy + Delta-G solvation = -15100.752552 eV Core-core repulsion = 12640.165122 eV Total energy + Delta-G solvation = -2460.587431 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.47123 -37.12643 -34.12660 -33.18987 -31.36102 -29.47233 -28.09697 -26.86775 -23.35738 -22.18980 -21.36510 -19.76371 -17.52641 -16.80464 -16.12844 -15.34296 -15.16009 -14.45948 -14.30029 -13.97268 -13.29510 -12.80995 -12.60668 -12.34909 -11.75228 -11.48134 -11.32172 -11.03794 -10.86798 -10.80980 -10.60801 -10.18618 -10.14268 -9.75863 -9.42338 -8.88627 -8.43734 -7.53772 -7.00908 -6.18842 -4.24109 2.05694 2.25534 3.26906 3.30156 3.33771 4.16811 4.24434 4.48384 4.65683 5.13505 5.42249 5.66677 5.90413 6.03096 6.13682 6.21157 6.32284 6.36452 6.43494 6.75855 6.79232 6.91191 7.04843 7.05925 7.12595 7.36313 7.43457 7.68394 7.78553 7.87885 8.07652 8.16229 8.59639 8.91745 9.41480 10.88035 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.037489 B = 0.007907 C = 0.007541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.696662 B = 3540.104950 C = 3711.984883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C 0.209 3.791 4 H 0.040 0.960 5 C -0.518 4.518 6 H 0.067 0.933 7 C 0.063 3.937 8 N -0.892 5.892 9 Si 0.909 3.091 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.275 1.275 13 O -0.312 6.312 14 C 0.201 3.799 15 C -0.228 4.228 16 C -0.042 4.042 17 C -0.257 4.257 18 C 0.245 3.755 19 N -0.881 5.881 20 C -0.288 4.288 21 H 0.034 0.966 22 H 0.043 0.957 23 H 0.044 0.956 24 H 0.106 0.894 25 H 0.043 0.957 26 H 0.266 0.734 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.109 0.891 30 H 0.396 0.604 31 H 0.393 0.607 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.025 4.334 2.505 10.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.177 4.177 3 C 0.155 3.845 4 H 0.057 0.943 5 C -0.556 4.556 6 H 0.085 0.915 7 C -0.139 4.139 8 N -0.530 5.530 9 Si 0.736 3.264 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.200 1.200 13 O -0.225 6.225 14 C 0.152 3.848 15 C -0.248 4.248 16 C -0.061 4.061 17 C -0.279 4.279 18 C 0.141 3.859 19 N -0.420 5.420 20 C -0.312 4.312 21 H 0.053 0.947 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.124 0.876 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.137 0.863 28 H 0.135 0.865 29 H 0.127 0.873 30 H 0.224 0.776 31 H 0.220 0.780 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.810 4.176 2.511 10.067 hybrid contribution 0.613 -0.071 -0.744 0.967 sum -8.196 4.105 1.767 9.336 Atomic orbital electron populations 1.21967 0.98703 0.99493 1.00456 1.22062 0.92382 0.99830 1.03398 1.20362 0.95249 0.88836 0.80045 0.94290 1.21070 0.90028 1.38448 1.06067 0.91465 1.24864 0.99140 0.94755 0.95134 1.69856 1.35417 1.38204 1.09531 0.86374 0.84124 0.78488 0.77425 1.19945 1.21082 1.20021 1.86142 1.34397 1.61376 1.40560 1.18919 0.85369 0.87938 0.92564 1.20182 1.00019 1.07422 0.97201 1.20493 0.93190 0.95629 0.96793 1.20246 1.03628 1.11341 0.92729 1.17506 0.90098 0.91922 0.86362 1.42445 1.27867 1.62123 1.09576 1.20924 0.98657 1.11465 1.00109 0.94655 0.93828 0.93650 0.87612 0.93811 0.92452 0.86323 0.86517 0.87287 0.77583 0.78012 0.84566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 8.45 37.16 0.31 -2.77 16 2 C -0.14 -3.36 5.48 -26.74 -0.15 -3.51 16 3 C 0.21 5.40 2.16 -27.89 -0.06 5.34 16 4 H 0.04 1.05 5.37 -51.93 -0.28 0.78 16 5 C -0.52 -14.52 8.89 -34.44 -0.31 -14.82 16 6 H 0.07 1.90 7.81 -52.48 -0.41 1.49 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -24.60 11.29 55.43 0.63 -23.97 16 9 Si 0.91 21.09 29.54 -169.99 -5.02 16.07 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 13 O -0.31 -7.69 9.65 -19.42 -0.19 -7.88 16 14 C 0.20 4.30 5.31 -39.25 -0.21 4.09 16 15 C -0.23 -4.23 9.98 -39.39 -0.39 -4.62 16 16 C -0.04 -0.66 10.03 -39.64 -0.40 -1.06 16 17 C -0.26 -3.97 9.89 -39.35 -0.39 -4.36 16 18 C 0.25 4.10 6.75 -83.81 -0.57 3.54 16 19 N -0.88 -11.41 9.09 32.40 0.29 -11.12 16 20 C -0.29 -5.73 7.00 -39.24 -0.27 -6.00 16 21 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.04 0.90 6.26 -51.93 -0.33 0.57 16 23 H 0.04 0.91 6.81 -51.93 -0.35 0.56 16 24 H 0.11 2.77 5.95 -51.93 -0.31 2.46 16 25 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 27 H 0.12 2.07 8.06 -52.49 -0.42 1.64 16 28 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 29 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 30 H 0.40 4.84 8.84 -40.82 -0.36 4.48 16 31 H 0.39 3.96 8.84 -40.82 -0.36 3.60 16 32 H 0.14 2.89 4.55 -52.48 -0.24 2.65 16 LS Contribution 263.33 15.07 3.97 3.97 Total: -1.00 -28.96 263.33 -6.73 -35.69 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -3.89 Total: 9.80 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: -2.52 Total: -22.56 kcal Atomic # 7 Polarization: -36.01 SS G_CDS: 0.92 Total: -35.08 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: -0.19 Total: -7.88 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -28.96 -6.73 -35.69 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038055328.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.717 kcal (2) G-P(sol) polarization free energy of solvation -28.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds