Wall clock time and date at job start Mon Mar 30 2020 03:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47456 * 2 1 4 4 H 1.08998 * 109.47278 * 54.99593 * 3 2 1 5 5 C 1.50695 * 109.47566 * 175.00212 * 3 2 1 6 6 H 1.08000 * 120.00292 * 119.99310 * 5 3 2 7 7 C 1.37881 * 119.99646 * 299.99866 * 5 3 2 8 8 N 1.31511 * 120.00042 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 120.00238 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.47066 * 89.99951 * 9 7 5 11 11 H 1.48496 * 109.47167 * 210.00347 * 9 7 5 12 12 H 1.48507 * 109.46955 * 330.00256 * 9 7 5 13 13 O 1.42900 * 109.46979 * 294.99979 * 3 2 1 14 14 C 1.36006 * 117.00018 * 99.31737 * 13 3 2 15 15 C 1.38694 * 119.98225 * 354.39370 * 14 13 3 16 16 C 1.38102 * 120.02071 * 179.70240 * 15 14 13 17 17 C 1.38859 * 119.98387 * 0.27840 * 16 15 14 18 18 N 1.39934 * 120.02571 * 179.97438 * 17 16 15 19 19 C 1.38870 * 119.95909 * 0.02562 * 17 16 15 20 20 C 1.38107 * 119.97870 * 359.97438 * 19 17 16 21 21 H 1.08997 * 109.46704 * 300.00027 * 1 2 3 22 22 H 1.08992 * 109.46990 * 60.00385 * 1 2 3 23 23 H 1.08999 * 109.47058 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47034 * 239.99544 * 2 1 3 25 25 H 1.09005 * 109.46764 * 119.99550 * 2 1 3 26 26 H 0.97003 * 120.00567 * 179.97438 * 8 7 5 27 27 H 1.07998 * 119.98990 * 359.97438 * 15 14 13 28 28 H 1.08009 * 120.01075 * 180.30413 * 16 15 14 29 29 H 0.97000 * 119.99954 * 359.97438 * 18 17 16 30 30 H 0.96998 * 120.00669 * 180.02562 * 18 17 16 31 31 H 1.07999 * 120.01027 * 179.97438 * 19 17 16 32 32 H 1.08003 * 119.98906 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8417 5 6 3.5419 1.4442 0.1238 6 1 4.1473 1.8887 -0.6524 7 6 4.1433 0.8783 1.2280 8 7 5.4540 0.8794 1.3358 9 14 3.0964 0.1100 2.5707 10 1 2.8745 -1.3261 2.2647 11 1 3.7942 0.2360 3.8755 12 1 1.7881 0.8094 2.6395 13 8 1.6621 2.0813 -1.2211 14 6 0.5647 2.8838 -1.1840 15 6 -0.1992 2.9606 -0.0289 16 6 -1.3101 3.7800 0.0116 17 6 -1.6657 4.5227 -1.1065 18 7 -2.7916 5.3528 -1.0666 19 6 -0.9040 4.4404 -2.2647 20 6 0.2066 3.6205 -2.3034 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 5.8771 0.4816 2.1128 27 1 0.0774 2.3828 0.8406 28 1 -1.9020 3.8434 0.9128 29 1 -3.3241 5.4093 -0.2578 30 1 -3.0399 5.8713 -1.8479 31 1 -1.1801 5.0174 -3.1349 32 1 0.7994 3.5567 -3.2040 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038055860.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:53 Heat of formation + Delta-G solvation = -10.040337 kcal Electronic energy + Delta-G solvation = -15043.292655 eV Core-core repulsion = 12583.222502 eV Total energy + Delta-G solvation = -2460.070153 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.59966 -37.42731 -34.05267 -32.98030 -31.95185 -30.45956 -28.16840 -26.80141 -23.13829 -22.60104 -21.58612 -20.00936 -17.79122 -16.84291 -16.28677 -16.27593 -15.27466 -14.52451 -14.25029 -13.74295 -13.33652 -12.98688 -12.82286 -12.64520 -12.13028 -11.98042 -11.88806 -11.54426 -11.22978 -10.77711 -10.53283 -10.48428 -9.83252 -9.58616 -9.31731 -8.90100 -8.62678 -8.57996 -6.70840 -6.19238 -4.20055 1.75353 2.13759 3.17463 3.25728 3.29620 4.07462 4.26476 4.29341 4.40432 5.09111 5.26287 5.30021 5.69862 5.78309 5.82921 5.86992 5.98305 6.05858 6.35450 6.39505 6.48916 6.57859 6.64932 6.68947 6.76980 6.93641 7.12276 7.20502 7.53595 7.71642 7.94979 8.18387 8.64950 8.92333 9.39062 10.93438 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.041346 B = 0.008040 C = 0.007670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.046685 B = 3481.671380 C = 3649.725847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.149 4.149 3 C 0.186 3.814 4 H 0.035 0.965 5 C -0.522 4.522 6 H 0.085 0.915 7 C 0.077 3.923 8 N -0.890 5.890 9 Si 0.881 3.119 10 H -0.273 1.273 11 H -0.291 1.291 12 H -0.265 1.265 13 O -0.303 6.303 14 C 0.104 3.896 15 C -0.169 4.169 16 C -0.156 4.156 17 C 0.157 3.843 18 N -0.889 5.889 19 C -0.158 4.158 20 C -0.122 4.122 21 H 0.047 0.953 22 H 0.057 0.943 23 H 0.044 0.956 24 H 0.071 0.929 25 H 0.060 0.940 26 H 0.268 0.732 27 H 0.134 0.866 28 H 0.114 0.886 29 H 0.392 0.608 30 H 0.392 0.608 31 H 0.118 0.882 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.992 4.687 -2.703 15.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.187 4.187 3 C 0.131 3.869 4 H 0.053 0.947 5 C -0.559 4.559 6 H 0.103 0.897 7 C -0.126 4.126 8 N -0.527 5.527 9 Si 0.710 3.290 10 H -0.200 1.200 11 H -0.218 1.218 12 H -0.190 1.190 13 O -0.216 6.216 14 C 0.056 3.944 15 C -0.188 4.188 16 C -0.179 4.179 17 C 0.056 3.944 18 N -0.432 5.432 19 C -0.181 4.181 20 C -0.141 4.141 21 H 0.066 0.934 22 H 0.076 0.924 23 H 0.063 0.937 24 H 0.089 0.911 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.152 0.848 28 H 0.132 0.868 29 H 0.219 0.781 30 H 0.219 0.781 31 H 0.136 0.864 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.606 4.524 -2.747 15.535 hybrid contribution -0.798 -0.328 1.065 1.371 sum -15.404 4.196 -1.682 16.053 Atomic orbital electron populations 1.22006 0.97444 1.00572 1.01398 1.22393 0.94009 1.00166 1.02116 1.20619 0.96371 0.88143 0.81775 0.94734 1.20932 0.88252 1.39180 1.07584 0.89653 1.24792 0.94911 0.95410 0.97484 1.69849 1.08520 1.44613 1.29761 0.86954 0.80625 0.80091 0.81306 1.20024 1.21837 1.19035 1.86141 1.40369 1.57776 1.37331 1.19004 0.88660 0.92893 0.93817 1.21325 0.96502 1.02122 0.98872 1.20319 0.99585 1.00649 0.97335 1.17595 0.89158 0.93385 0.94295 1.42279 1.30740 1.52155 1.17978 1.20264 0.97328 1.03460 0.97026 1.20177 0.98119 0.98051 0.97784 0.93382 0.92437 0.93708 0.91074 0.92221 0.92198 0.84848 0.86788 0.78115 0.78120 0.86409 0.85653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 8.48 37.16 0.32 -2.57 16 2 C -0.15 -3.30 5.14 -26.73 -0.14 -3.44 16 3 C 0.19 4.56 1.71 -27.89 -0.05 4.52 16 4 H 0.04 0.85 4.48 -51.93 -0.23 0.62 16 5 C -0.52 -15.03 9.47 -34.44 -0.33 -15.36 16 6 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 7 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 8 N -0.89 -26.96 13.96 55.43 0.77 -26.19 16 9 Si 0.88 21.32 24.41 -169.99 -4.15 17.17 16 10 H -0.27 -6.40 6.83 56.52 0.39 -6.02 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.06 6.53 56.52 0.37 -5.69 16 13 O -0.30 -7.12 9.57 -19.76 -0.19 -7.31 16 14 C 0.10 2.09 5.65 -39.24 -0.22 1.87 16 15 C -0.17 -3.12 7.35 -39.46 -0.29 -3.41 16 16 C -0.16 -2.44 9.89 -39.40 -0.39 -2.82 16 17 C 0.16 2.23 6.76 -83.69 -0.57 1.66 16 18 N -0.89 -9.07 9.10 32.45 0.30 -8.77 16 19 C -0.16 -2.32 9.89 -39.40 -0.39 -2.71 16 20 C -0.12 -2.11 9.98 -39.46 -0.39 -2.50 16 21 H 0.05 0.84 6.72 -51.93 -0.35 0.49 16 22 H 0.06 1.05 6.53 -51.93 -0.34 0.71 16 23 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 25 H 0.06 1.36 3.22 -51.93 -0.17 1.19 16 26 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 27 H 0.13 2.55 4.26 -52.49 -0.22 2.33 16 28 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 29 H 0.39 3.31 8.84 -40.82 -0.36 2.94 16 30 H 0.39 3.18 8.84 -40.82 -0.36 2.82 16 31 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.13 2.01 8.06 -52.48 -0.42 1.59 16 LS Contribution 256.98 15.07 3.87 3.87 Total: -1.00 -30.84 256.98 -5.69 -36.53 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -3.75 Total: 7.37 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: -2.54 Total: -22.67 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 1.07 Total: -34.96 kcal Atomic # 8 Polarization: -7.12 SS G_CDS: -0.19 Total: -7.31 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.15 Total: 17.17 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.84 -5.69 -36.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038055860.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.489 kcal (2) G-P(sol) polarization free energy of solvation -30.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds