Wall clock time and date at job start Mon Mar 30 2020 03:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47456 * 2 1 4 4 H 1.08998 * 109.47278 * 54.99593 * 3 2 1 5 5 C 1.50695 * 109.47566 * 175.00212 * 3 2 1 6 6 H 1.08000 * 120.00292 * 119.99310 * 5 3 2 7 7 C 1.37881 * 119.99646 * 299.99866 * 5 3 2 8 8 N 1.31511 * 120.00042 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 120.00238 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.47066 * 89.99951 * 9 7 5 11 11 H 1.48496 * 109.47167 * 210.00347 * 9 7 5 12 12 H 1.48507 * 109.46955 * 330.00256 * 9 7 5 13 13 O 1.42900 * 109.46979 * 294.99979 * 3 2 1 14 14 C 1.36006 * 117.00018 * 99.31737 * 13 3 2 15 15 C 1.38694 * 119.98225 * 354.39370 * 14 13 3 16 16 C 1.38102 * 120.02071 * 179.70240 * 15 14 13 17 17 C 1.38859 * 119.98387 * 0.27840 * 16 15 14 18 18 N 1.39934 * 120.02571 * 179.97438 * 17 16 15 19 19 C 1.38870 * 119.95909 * 0.02562 * 17 16 15 20 20 C 1.38107 * 119.97870 * 359.97438 * 19 17 16 21 21 H 1.08997 * 109.46704 * 300.00027 * 1 2 3 22 22 H 1.08992 * 109.46990 * 60.00385 * 1 2 3 23 23 H 1.08999 * 109.47058 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47034 * 239.99544 * 2 1 3 25 25 H 1.09005 * 109.46764 * 119.99550 * 2 1 3 26 26 H 0.97003 * 120.00567 * 179.97438 * 8 7 5 27 27 H 1.07998 * 119.98990 * 359.97438 * 15 14 13 28 28 H 1.08009 * 120.01075 * 180.30413 * 16 15 14 29 29 H 0.97000 * 119.99954 * 359.97438 * 18 17 16 30 30 H 0.96998 * 120.00669 * 180.02562 * 18 17 16 31 31 H 1.07999 * 120.01027 * 179.97438 * 19 17 16 32 32 H 1.08003 * 119.98906 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8417 5 6 3.5419 1.4442 0.1238 6 1 4.1473 1.8887 -0.6524 7 6 4.1433 0.8783 1.2280 8 7 5.4540 0.8794 1.3358 9 14 3.0964 0.1100 2.5707 10 1 2.8745 -1.3261 2.2647 11 1 3.7942 0.2360 3.8755 12 1 1.7881 0.8094 2.6395 13 8 1.6621 2.0813 -1.2211 14 6 0.5647 2.8838 -1.1840 15 6 -0.1992 2.9606 -0.0289 16 6 -1.3101 3.7800 0.0116 17 6 -1.6657 4.5227 -1.1065 18 7 -2.7916 5.3528 -1.0666 19 6 -0.9040 4.4404 -2.2647 20 6 0.2066 3.6205 -2.3034 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5137 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 5.8771 0.4816 2.1128 27 1 0.0774 2.3828 0.8406 28 1 -1.9020 3.8434 0.9128 29 1 -3.3241 5.4093 -0.2578 30 1 -3.0399 5.8713 -1.8479 31 1 -1.1801 5.0174 -3.1349 32 1 0.7994 3.5567 -3.2040 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038055860.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:39:52 Heat of formation + Delta-G solvation = -32.248163 kcal Electronic energy + Delta-G solvation = -15044.255659 eV Core-core repulsion = 12583.222502 eV Total energy + Delta-G solvation = -2461.033156 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.04316 -38.84892 -35.70029 -34.40471 -33.84600 -31.73519 -29.86761 -28.24929 -24.88264 -24.10364 -22.94267 -21.59536 -19.45210 -18.61001 -17.61802 -17.52674 -16.93682 -16.08877 -15.82960 -15.17260 -14.92634 -14.65801 -14.20738 -13.96734 -13.72707 -13.55200 -13.39768 -13.07187 -12.94508 -12.52177 -12.22750 -11.93791 -11.63571 -11.34688 -11.00133 -10.85524 -10.38365 -9.84243 -8.40674 -7.93456 -6.48453 0.49695 0.83761 1.25984 1.30799 1.41895 2.22662 2.74429 2.92354 3.04243 3.18566 4.01120 4.07672 4.20750 4.24694 4.28004 4.49219 4.58343 4.68470 4.82874 4.97064 5.03939 5.15453 5.17588 5.30094 5.42499 5.45723 5.49222 5.69571 5.88248 6.07953 6.54656 6.71118 6.97551 7.18458 7.18789 8.76527 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.041346 B = 0.008040 C = 0.007670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.046685 B = 3481.671380 C = 3649.725847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.148 4.148 3 C 0.194 3.806 4 H 0.038 0.962 5 C -0.543 4.543 6 H 0.031 0.969 7 C 0.021 3.979 8 N -0.939 5.939 9 Si 0.947 3.053 10 H -0.256 1.256 11 H -0.287 1.287 12 H -0.241 1.241 13 O -0.332 6.332 14 C 0.056 3.944 15 C -0.175 4.175 16 C -0.162 4.162 17 C 0.172 3.828 18 N -0.870 5.870 19 C -0.157 4.157 20 C -0.128 4.128 21 H 0.058 0.942 22 H 0.054 0.946 23 H 0.071 0.929 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.273 0.727 27 H 0.123 0.877 28 H 0.141 0.859 29 H 0.405 0.595 30 H 0.406 0.594 31 H 0.151 0.849 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.803 5.168 -1.885 19.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.185 4.185 3 C 0.138 3.862 4 H 0.056 0.944 5 C -0.580 4.580 6 H 0.049 0.951 7 C -0.177 4.177 8 N -0.578 5.578 9 Si 0.772 3.228 10 H -0.181 1.181 11 H -0.214 1.214 12 H -0.164 1.164 13 O -0.247 6.247 14 C 0.010 3.990 15 C -0.195 4.195 16 C -0.185 4.185 17 C 0.069 3.931 18 N -0.413 5.413 19 C -0.179 4.179 20 C -0.148 4.148 21 H 0.077 0.923 22 H 0.073 0.927 23 H 0.090 0.910 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.141 0.859 28 H 0.159 0.841 29 H 0.234 0.766 30 H 0.235 0.765 31 H 0.169 0.831 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -18.477 5.047 -1.953 19.253 hybrid contribution 0.338 -0.280 0.670 0.801 sum -18.139 4.767 -1.282 18.798 Atomic orbital electron populations 1.21908 0.94117 1.02462 1.01873 1.22280 0.96954 0.97945 1.01356 1.20340 0.93255 0.89945 0.82649 0.94419 1.21217 0.90933 1.39211 1.06680 0.95067 1.25744 0.96218 0.95628 1.00119 1.70006 1.10800 1.45955 1.31035 0.85873 0.79610 0.80026 0.77340 1.18107 1.21369 1.16434 1.86054 1.42735 1.59251 1.36648 1.19341 0.88963 0.94792 0.95923 1.21283 0.97426 1.02933 0.97815 1.20565 0.98934 1.00085 0.98904 1.17712 0.89488 0.92479 0.93465 1.42251 1.29109 1.50652 1.19289 1.20574 0.96155 1.02729 0.98471 1.20391 0.99108 0.98102 0.97168 0.92272 0.92656 0.91001 0.92200 0.92597 0.91792 0.85894 0.84141 0.76614 0.76457 0.83141 0.85563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.06 8.48 71.98 0.61 -4.44 16 2 C -0.15 -6.47 5.14 30.59 0.16 -6.31 16 3 C 0.19 9.73 1.71 29.84 0.05 9.78 16 4 H 0.04 1.86 4.48 -2.39 -0.01 1.85 16 5 C -0.54 -33.04 9.47 25.60 0.24 -32.80 16 6 H 0.03 2.15 8.06 -2.91 -0.02 2.13 16 7 C 0.02 1.26 5.45 84.66 0.46 1.72 16 8 N -0.94 -59.28 13.96 21.45 0.30 -58.98 16 9 Si 0.95 43.84 24.41 68.60 1.67 45.51 16 10 H -0.26 -11.07 6.83 99.48 0.68 -10.39 16 11 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.24 -10.12 6.53 99.48 0.65 -9.47 16 13 O -0.33 -16.28 9.57 -93.62 -0.90 -17.18 16 14 C 0.06 2.27 5.65 22.49 0.13 2.40 16 15 C -0.18 -6.26 7.35 22.35 0.16 -6.10 16 16 C -0.16 -4.55 9.89 22.39 0.22 -4.33 16 17 C 0.17 4.24 6.76 38.15 0.26 4.50 16 18 N -0.87 -13.53 9.10 -51.26 -0.47 -14.00 16 19 C -0.16 -4.13 9.89 22.39 0.22 -3.91 16 20 C -0.13 -4.36 9.98 22.35 0.22 -4.14 16 21 H 0.06 1.90 6.72 -2.39 -0.02 1.88 16 22 H 0.05 1.93 6.53 -2.39 -0.02 1.92 16 23 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 24 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 25 H 0.06 2.46 3.22 -2.38 -0.01 2.45 16 26 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 27 H 0.12 4.56 4.26 -2.91 -0.01 4.55 16 28 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 29 H 0.40 4.78 8.84 -92.71 -0.82 3.96 16 30 H 0.41 4.53 8.84 -92.71 -0.82 3.71 16 31 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 32 H 0.13 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -70.84 256.98 2.78 -68.06 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -0.57 Total: 20.20 kcal Atomic # 6 Polarization: -46.35 SS G_CDS: 2.74 Total: -43.62 kcal Atomic # 7 Polarization: -72.81 SS G_CDS: -0.17 Total: -72.98 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -0.90 Total: -17.18 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.67 Total: 45.51 kcal Total: -70.84 2.78 -68.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038055860.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.809 kcal (2) G-P(sol) polarization free energy of solvation -70.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds