Wall clock time and date at job start Mon Mar 30 2020 02:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35736 * 116.99626 * 2 1 4 4 C 1.39294 * 120.84726 * 270.01840 * 3 2 1 5 5 C 1.50699 * 120.45366 * 0.02562 * 4 3 2 6 6 C 1.37950 * 119.09066 * 179.97438 * 4 3 2 7 7 N 1.31974 * 120.82628 * 359.97438 * 6 4 3 8 8 C 1.31953 * 121.86307 * 359.74053 * 7 6 4 9 9 C 1.50698 * 119.59099 * 180.26944 * 8 7 6 10 10 C 1.50702 * 109.47046 * 270.27079 * 9 8 7 11 11 H 1.07994 * 120.00089 * 0.02562 * 10 9 8 12 12 C 1.37880 * 119.99885 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99859 * 359.97438 * 12 10 9 14 14 Si 1.86793 * 119.99934 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47479 * 90.00215 * 14 12 10 16 16 H 1.48510 * 109.47023 * 209.99681 * 14 12 10 17 17 H 1.48503 * 109.47125 * 329.99641 * 14 12 10 18 18 C 1.37993 * 120.81929 * 0.54865 * 8 7 6 19 19 C 1.50703 * 120.45375 * 179.72308 * 18 8 7 20 20 H 1.09002 * 109.46837 * 179.97438 * 1 2 3 21 21 H 1.09004 * 109.46550 * 299.99844 * 1 2 3 22 22 H 1.09000 * 109.47372 * 59.99470 * 1 2 3 23 23 H 1.08996 * 109.47111 * 89.99431 * 5 4 3 24 24 H 1.08997 * 109.47119 * 209.99648 * 5 4 3 25 25 H 1.09002 * 109.46963 * 329.99330 * 5 4 3 26 26 H 1.07994 * 119.58539 * 180.02562 * 6 4 3 27 27 H 1.09004 * 109.47096 * 30.27255 * 9 8 7 28 28 H 1.09000 * 109.47149 * 150.27268 * 9 8 7 29 29 H 0.96994 * 119.99648 * 180.02562 * 13 12 10 30 30 H 1.09002 * 109.47152 * 269.72048 * 19 18 8 31 31 H 1.09001 * 109.46980 * 149.72149 * 19 18 8 32 32 H 1.09004 * 109.47113 * 29.72129 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 2.3691 1.8460 -1.1959 5 6 2.0397 1.2017 -2.5178 6 6 2.9945 3.0749 -1.1536 7 7 3.2850 3.6465 -0.0001 8 6 2.9893 3.0777 1.1532 9 6 3.3392 3.7792 2.4403 10 6 4.7248 3.3738 2.8727 11 1 5.2951 2.6782 2.2751 12 6 5.2648 3.8918 4.0308 13 7 4.5708 4.7401 4.7578 14 14 6.9825 3.3900 4.5664 15 1 7.9767 4.3241 3.9797 16 1 7.0727 3.4376 6.0479 17 1 7.2635 2.0092 4.0975 18 6 2.3689 1.8459 1.1955 19 6 2.0405 1.2009 2.5173 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3632 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 1.0448 1.5131 -2.8358 24 1 2.7724 1.5085 -3.2641 25 1 2.0637 0.1173 -2.4094 26 1 3.2489 3.5757 -2.0760 27 1 3.3076 4.8578 2.2864 28 1 2.6218 3.5011 3.2123 29 1 4.9508 5.1048 5.5722 30 1 2.8772 0.5793 2.8361 31 1 1.1493 0.5828 2.4086 32 1 1.8575 1.9743 3.2634 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048772616.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:12 Heat of formation + Delta-G solvation = -39.403796 kcal Electronic energy + Delta-G solvation = -14948.204105 eV Core-core repulsion = 12486.860657 eV Total energy + Delta-G solvation = -2461.343448 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.69197 -39.02026 -35.94410 -34.38575 -33.46184 -30.91203 -28.93757 -27.56190 -27.11203 -25.00757 -23.08203 -21.69771 -18.65104 -18.49175 -18.27335 -16.73813 -16.50108 -15.70867 -15.31349 -15.10181 -14.95328 -14.30034 -14.22133 -13.87073 -13.74726 -13.27589 -13.11597 -13.04306 -12.79326 -12.67093 -12.58138 -12.36668 -11.89336 -11.53778 -10.91213 -10.60674 -10.29149 -10.08315 -9.47656 -8.22023 -6.33356 0.18515 0.22913 1.38395 1.39884 1.50922 2.37733 2.53775 2.93399 3.09642 3.58990 3.84656 3.93759 4.11189 4.37339 4.41326 4.45585 4.50605 4.64477 4.70863 4.77992 4.82427 4.85949 5.10236 5.16492 5.23252 5.30646 5.39103 5.48938 5.70918 5.76372 6.13193 6.42966 6.74474 7.24077 7.33677 8.88438 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.037834 B = 0.007732 C = 0.007184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.900783 B = 3620.433227 C = 3896.871627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.339 6.339 3 C 0.130 3.870 4 C -0.175 4.175 5 C -0.093 4.093 6 C 0.095 3.905 7 N -0.519 5.519 8 C 0.146 3.854 9 C 0.070 3.930 10 C -0.520 4.520 11 H 0.044 0.956 12 C 0.010 3.990 13 N -0.926 5.926 14 Si 0.964 3.036 15 H -0.274 1.274 16 H -0.274 1.274 17 H -0.268 1.268 18 C -0.168 4.168 19 C -0.092 4.092 20 H 0.124 0.876 21 H 0.045 0.955 22 H 0.058 0.942 23 H 0.085 0.915 24 H 0.086 0.914 25 H 0.071 0.929 26 H 0.183 0.817 27 H 0.002 0.998 28 H 0.032 0.968 29 H 0.267 0.733 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.404 -9.488 -11.371 17.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.256 6.256 3 C 0.078 3.922 4 C -0.178 4.178 5 C -0.150 4.150 6 C -0.063 4.063 7 N -0.228 5.228 8 C 0.010 3.990 9 C 0.033 3.967 10 C -0.559 4.559 11 H 0.062 0.938 12 C -0.188 4.188 13 N -0.566 5.566 14 Si 0.788 3.212 15 H -0.200 1.200 16 H -0.199 1.199 17 H -0.193 1.193 18 C -0.170 4.170 19 C -0.149 4.149 20 H 0.142 0.858 21 H 0.064 0.936 22 H 0.077 0.923 23 H 0.103 0.897 24 H 0.105 0.895 25 H 0.090 0.910 26 H 0.200 0.800 27 H 0.021 0.979 28 H 0.050 0.950 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.919 -8.752 -11.202 16.272 hybrid contribution 0.427 -0.381 0.660 0.874 sum -7.491 -9.134 -10.542 15.833 Atomic orbital electron populations 1.23270 0.76666 1.05207 1.01368 1.85897 1.21878 1.23521 1.94296 1.18733 0.96162 0.86020 0.91273 1.21489 1.02961 0.96217 0.97088 1.20603 1.02995 1.00563 0.90849 1.23103 0.94647 0.92295 0.96229 1.67538 1.18813 1.37588 0.98858 1.21560 0.91258 0.91864 0.94323 1.18051 0.96486 0.94182 0.87982 1.21089 1.00352 1.26784 1.07657 0.93809 1.25816 1.01959 0.94796 0.96242 1.70057 1.39234 1.31409 1.15850 0.85473 0.79261 0.78825 0.77661 1.19982 1.19850 1.19264 1.21195 1.02770 0.95633 0.97424 1.20548 1.01698 1.00095 0.92537 0.85807 0.93638 0.92284 0.89663 0.89522 0.90983 0.79988 0.97940 0.95028 0.92386 0.91697 0.90042 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.82 113.37 1.23 1.79 16 2 O -0.34 -9.82 8.90 -90.60 -0.81 -10.63 16 3 C 0.13 4.50 5.73 22.77 0.13 4.63 16 4 C -0.18 -5.41 5.91 -19.68 -0.12 -5.52 16 5 C -0.09 -1.88 9.84 71.24 0.70 -1.18 16 6 C 0.09 3.30 10.85 84.60 0.92 4.21 16 7 N -0.52 -23.73 10.27 -184.13 -1.89 -25.62 16 8 C 0.15 7.06 5.97 42.48 0.25 7.31 16 9 C 0.07 3.94 4.86 29.10 0.14 4.08 16 10 C -0.52 -30.85 9.09 25.60 0.23 -30.61 16 11 H 0.04 2.62 7.74 -2.91 -0.02 2.60 16 12 C 0.01 0.61 5.46 84.65 0.46 1.07 16 13 N -0.93 -56.16 13.29 21.45 0.28 -55.88 16 14 Si 0.96 45.36 29.54 68.60 2.03 47.38 16 15 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 16 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 17 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 18 C -0.17 -6.96 5.91 -19.68 -0.12 -7.07 16 19 C -0.09 -3.48 9.43 71.24 0.67 -2.81 16 20 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 21 H 0.04 0.93 7.34 -2.39 -0.02 0.91 16 22 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 24 H 0.09 1.44 8.09 -2.39 -0.02 1.42 16 25 H 0.07 1.45 7.62 -2.39 -0.02 1.43 16 26 H 0.18 4.83 8.06 -2.91 -0.02 4.81 16 27 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 28 H 0.03 1.79 5.93 -2.39 -0.01 1.77 16 29 H 0.27 15.13 8.31 -92.71 -0.77 14.35 16 30 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.08 2.50 6.53 -2.39 -0.02 2.48 16 32 H 0.06 2.57 5.94 -2.38 -0.01 2.56 16 Total: -1.00 -70.18 273.45 5.23 -64.95 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: 1.11 Total: 3.90 kcal Atomic # 6 Polarization: -28.62 SS G_CDS: 4.50 Total: -24.12 kcal Atomic # 7 Polarization: -79.89 SS G_CDS: -1.61 Total: -81.50 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: -0.81 Total: -10.63 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -70.18 5.23 -64.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048772616.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.548 kcal (2) G-P(sol) polarization free energy of solvation -70.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds