Wall clock time and date at job start Mon Mar 30 2020 03:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47210 * 2 1 4 4 O 1.42898 * 109.47102 * 179.97438 * 3 2 1 5 5 C 1.35949 * 116.99811 * 180.02562 * 4 3 2 6 6 C 1.38790 * 119.96697 * 0.29913 * 5 4 3 7 7 C 1.37998 * 120.03643 * 180.26029 * 6 5 4 8 8 C 1.39085 * 119.96244 * 359.44069 * 7 6 5 9 9 N 1.39406 * 120.03567 * 180.30389 * 8 7 6 10 10 C 1.36826 * 120.00325 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99861 * 0.02562 * 10 9 8 12 12 C 1.38752 * 120.00391 * 179.97438 * 10 9 8 13 13 N 1.31619 * 120.00470 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99799 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.46839 * 90.00162 * 14 12 10 16 16 H 1.48499 * 109.47412 * 209.99870 * 14 12 10 17 17 H 1.48499 * 109.47469 * 330.00187 * 14 12 10 18 18 C 1.39078 * 119.93296 * 0.28111 * 8 7 6 19 19 C 1.38002 * 119.96679 * 0.02562 * 18 8 7 20 20 H 1.09003 * 109.47028 * 299.99824 * 1 2 3 21 21 H 1.09000 * 109.46968 * 59.99891 * 1 2 3 22 22 H 1.09003 * 109.46985 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47487 * 240.00448 * 2 1 3 24 24 H 1.09006 * 109.47632 * 120.00242 * 2 1 3 25 25 H 1.09003 * 109.46981 * 60.00147 * 3 2 1 26 26 H 1.09000 * 109.47244 * 299.99939 * 3 2 1 27 27 H 1.08004 * 119.98512 * 0.02562 * 6 5 4 28 28 H 1.08002 * 120.02282 * 179.72398 * 7 6 5 29 29 H 0.97002 * 119.99747 * 0.02562 * 9 8 7 30 30 H 0.97000 * 119.99944 * 180.02562 * 13 12 10 31 31 H 1.07993 * 120.01856 * 180.02562 * 18 8 7 32 32 H 1.07994 * 119.98629 * 180.02562 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0862 2.6538 0.0012 6 6 3.3296 3.8174 0.0075 7 6 3.9545 5.0477 0.0027 8 6 5.3434 5.1213 0.0034 9 7 5.9764 6.3634 0.0049 10 6 7.3427 6.4351 0.0061 11 1 7.9310 5.5293 0.0053 12 6 7.9727 7.6714 0.0071 13 7 9.2871 7.7403 0.0077 14 14 6.9553 9.2380 0.0076 15 1 6.6852 9.6523 1.4079 16 1 7.7028 10.3140 -0.6914 17 1 5.6691 8.9933 -0.6930 18 6 6.1002 3.9545 0.0029 19 6 5.4723 2.7256 0.0013 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.6767 1.9564 -0.8900 27 1 2.2511 3.7599 0.0124 28 1 3.3656 5.9530 0.0031 29 1 5.4480 7.1769 0.0060 30 1 9.7274 8.6046 0.0087 31 1 7.1787 4.0100 0.0038 32 1 6.0597 1.8194 0.0013 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051786067.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:36 Heat of formation + Delta-G solvation = -17.797452 kcal Electronic energy + Delta-G solvation = -14209.084831 eV Core-core repulsion = 11748.678304 eV Total energy + Delta-G solvation = -2460.406527 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.31632 -37.47028 -34.76327 -33.55801 -31.82560 -30.18240 -27.86509 -26.30905 -23.98220 -22.49795 -21.26736 -20.32239 -18.16692 -17.37049 -16.25520 -15.96226 -15.31414 -14.62221 -13.91010 -13.85889 -13.45877 -13.07799 -12.62462 -12.49470 -12.46071 -12.18885 -11.93865 -11.61495 -11.33369 -11.15063 -10.97513 -10.66394 -10.60493 -10.13653 -9.73358 -9.68144 -8.60158 -8.17129 -6.56897 -6.40141 -3.68847 2.22902 2.50216 3.05757 3.08112 3.13032 3.77653 4.06294 4.61269 4.87853 4.90538 4.95932 5.20760 5.22941 5.42338 5.46696 5.53360 5.66325 5.70675 5.82438 6.02789 6.06515 6.20291 6.31844 6.59588 6.77678 6.97920 7.20456 7.29204 7.58927 7.66544 7.93842 8.26502 8.63794 9.31634 9.36972 10.72142 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.071169 B = 0.005184 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.336327 B = 5399.816064 C = 5767.402526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.065 3.935 4 O -0.328 6.328 5 C 0.004 3.996 6 C -0.141 4.141 7 C -0.211 4.211 8 C 0.194 3.806 9 N -0.601 5.601 10 C -0.300 4.300 11 H 0.117 0.883 12 C 0.035 3.965 13 N -0.885 5.885 14 Si 0.883 3.117 15 H -0.271 1.271 16 H -0.277 1.277 17 H -0.269 1.269 18 C -0.177 4.177 19 C -0.087 4.087 20 H 0.056 0.944 21 H 0.056 0.944 22 H 0.060 0.940 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.109 0.891 28 H 0.106 0.894 29 H 0.376 0.624 30 H 0.274 0.726 31 H 0.129 0.871 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.734 -8.667 0.007 16.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.011 4.011 4 O -0.243 6.243 5 C -0.042 4.042 6 C -0.161 4.161 7 C -0.236 4.236 8 C 0.078 3.922 9 N -0.210 5.210 10 C -0.429 4.429 11 H 0.134 0.866 12 C -0.168 4.168 13 N -0.523 5.523 14 Si 0.710 3.290 15 H -0.197 1.197 16 H -0.202 1.202 17 H -0.195 1.195 18 C -0.201 4.201 19 C -0.106 4.106 20 H 0.075 0.925 21 H 0.075 0.925 22 H 0.079 0.921 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.127 0.873 28 H 0.124 0.876 29 H 0.210 0.790 30 H 0.084 0.916 31 H 0.147 0.853 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -13.155 -8.588 0.007 15.710 hybrid contribution -0.757 1.509 -0.013 1.689 sum -13.912 -7.079 -0.006 15.610 Atomic orbital electron populations 1.21687 0.94836 1.02029 1.02067 1.21463 0.95550 0.95778 1.03305 1.22575 0.80586 0.97401 1.00554 1.85918 1.19351 1.27980 1.91080 1.18400 0.91921 0.83193 1.10704 1.20618 0.98081 0.92075 1.05325 1.20057 0.92471 0.96674 1.14382 1.17696 0.90856 0.86436 0.97162 1.41124 1.06184 1.03209 1.70463 1.19405 0.79943 0.96135 1.47414 0.86563 1.24958 0.95708 0.98035 0.98065 1.69699 1.07199 1.25958 1.49432 0.86580 0.80046 0.83467 0.78928 1.19652 1.20201 1.19494 1.20441 0.99755 0.89922 1.09982 1.20022 0.90906 0.97363 1.02333 0.92515 0.92521 0.92131 0.91148 0.91146 0.93043 0.93035 0.87335 0.87634 0.78972 0.91570 0.85347 0.86804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.16 0.37 -0.83 16 2 C -0.12 -1.28 6.30 -26.73 -0.17 -1.45 16 3 C 0.06 0.85 4.74 37.16 0.18 1.03 16 4 O -0.33 -5.65 10.14 -19.58 -0.20 -5.85 16 5 C 0.00 0.08 6.69 -39.17 -0.26 -0.19 16 6 C -0.14 -2.58 9.03 -39.47 -0.36 -2.94 16 7 C -0.21 -4.16 9.89 -39.36 -0.39 -4.55 16 8 C 0.19 4.33 6.62 -83.79 -0.55 3.77 16 9 N -0.60 -14.27 5.24 -9.59 -0.05 -14.32 16 10 C -0.30 -8.00 10.04 -15.13 -0.15 -8.15 16 11 H 0.12 3.27 5.91 -52.48 -0.31 2.96 16 12 C 0.04 0.94 5.50 -17.45 -0.10 0.85 16 13 N -0.88 -25.16 13.97 55.49 0.78 -24.39 16 14 Si 0.88 19.74 27.73 -169.99 -4.71 15.03 16 15 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 16 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.27 -5.69 6.52 56.52 0.37 -5.32 16 18 C -0.18 -3.85 9.30 -39.36 -0.37 -4.21 16 19 C -0.09 -1.71 9.98 -39.46 -0.39 -2.11 16 20 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 21 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 22 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 23 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.05 0.65 7.64 -51.93 -0.40 0.25 16 26 H 0.05 0.65 7.67 -51.93 -0.40 0.25 16 27 H 0.11 1.67 6.29 -52.48 -0.33 1.34 16 28 H 0.11 1.88 8.06 -52.49 -0.42 1.45 16 29 H 0.38 8.37 5.76 -40.82 -0.24 8.14 16 30 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.13 2.88 5.95 -52.49 -0.31 2.56 16 32 H 0.11 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 270.17 15.07 4.07 4.07 Total: -1.00 -28.39 270.17 -6.42 -34.81 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -4.11 Total: 9.42 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: -2.19 Total: -18.77 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.72 Total: -38.71 kcal Atomic # 8 Polarization: -5.65 SS G_CDS: -0.20 Total: -5.85 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.71 Total: 15.03 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.39 -6.42 -34.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051786067.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.015 kcal (2) G-P(sol) polarization free energy of solvation -28.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds