Wall clock time and date at job start Mon Mar 30 2020 03:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47210 * 2 1 4 4 O 1.42898 * 109.47102 * 179.97438 * 3 2 1 5 5 C 1.35949 * 116.99811 * 180.02562 * 4 3 2 6 6 C 1.38790 * 119.96697 * 0.29913 * 5 4 3 7 7 C 1.37998 * 120.03643 * 180.26029 * 6 5 4 8 8 C 1.39085 * 119.96244 * 359.44069 * 7 6 5 9 9 N 1.39406 * 120.03567 * 180.30389 * 8 7 6 10 10 C 1.36826 * 120.00325 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99861 * 0.02562 * 10 9 8 12 12 C 1.38752 * 120.00391 * 179.97438 * 10 9 8 13 13 N 1.31619 * 120.00470 * 180.02562 * 12 10 9 14 14 Si 1.86803 * 119.99799 * 0.02562 * 12 10 9 15 15 H 1.48501 * 109.46839 * 90.00162 * 14 12 10 16 16 H 1.48499 * 109.47412 * 209.99870 * 14 12 10 17 17 H 1.48499 * 109.47469 * 330.00187 * 14 12 10 18 18 C 1.39078 * 119.93296 * 0.28111 * 8 7 6 19 19 C 1.38002 * 119.96679 * 0.02562 * 18 8 7 20 20 H 1.09003 * 109.47028 * 299.99824 * 1 2 3 21 21 H 1.09000 * 109.46968 * 59.99891 * 1 2 3 22 22 H 1.09003 * 109.46985 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47487 * 240.00448 * 2 1 3 24 24 H 1.09006 * 109.47632 * 120.00242 * 2 1 3 25 25 H 1.09003 * 109.46981 * 60.00147 * 3 2 1 26 26 H 1.09000 * 109.47244 * 299.99939 * 3 2 1 27 27 H 1.08004 * 119.98512 * 0.02562 * 6 5 4 28 28 H 1.08002 * 120.02282 * 179.72398 * 7 6 5 29 29 H 0.97002 * 119.99747 * 0.02562 * 9 8 7 30 30 H 0.97000 * 119.99944 * 180.02562 * 13 12 10 31 31 H 1.07993 * 120.01856 * 180.02562 * 18 8 7 32 32 H 1.07994 * 119.98629 * 180.02562 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0862 2.6538 0.0012 6 6 3.3296 3.8174 0.0075 7 6 3.9545 5.0477 0.0027 8 6 5.3434 5.1213 0.0034 9 7 5.9764 6.3634 0.0049 10 6 7.3427 6.4351 0.0061 11 1 7.9310 5.5293 0.0053 12 6 7.9727 7.6714 0.0071 13 7 9.2871 7.7403 0.0077 14 14 6.9553 9.2380 0.0076 15 1 6.6852 9.6523 1.4079 16 1 7.7028 10.3140 -0.6914 17 1 5.6691 8.9933 -0.6930 18 6 6.1002 3.9545 0.0029 19 6 5.4723 2.7256 0.0013 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5138 -0.8900 24 1 1.8934 -0.5139 0.8900 25 1 1.6767 1.9563 0.8900 26 1 1.6767 1.9564 -0.8900 27 1 2.2511 3.7599 0.0124 28 1 3.3656 5.9530 0.0031 29 1 5.4480 7.1769 0.0060 30 1 9.7274 8.6046 0.0087 31 1 7.1787 4.0100 0.0038 32 1 6.0597 1.8194 0.0013 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051786067.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:36 Heat of formation + Delta-G solvation = -34.521814 kcal Electronic energy + Delta-G solvation = -14209.810054 eV Core-core repulsion = 11748.678304 eV Total energy + Delta-G solvation = -2461.131749 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.81743 -39.00639 -36.35467 -34.63010 -33.66962 -31.77407 -29.46423 -27.44264 -25.73769 -23.92435 -22.47801 -21.80263 -19.98544 -18.86240 -17.94228 -17.02416 -16.90093 -16.22621 -15.42094 -15.05839 -14.93980 -14.49686 -14.24852 -14.04863 -14.03641 -13.45863 -13.03126 -12.96709 -12.74924 -12.50454 -12.41056 -12.03139 -11.81458 -11.71152 -11.36478 -11.24037 -10.42376 -9.76897 -8.37666 -8.27628 -5.70588 0.61776 0.88007 1.29078 1.36017 1.39138 2.22926 2.53237 2.87424 3.20207 3.32487 4.00767 4.04676 4.15248 4.18733 4.40191 4.51091 4.62359 4.63860 4.72302 4.90509 4.97610 5.16352 5.17875 5.24918 5.30963 5.42842 5.54907 5.63034 5.80721 5.93498 6.08217 6.70230 6.82064 7.42728 7.51918 8.78584 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.071169 B = 0.005184 C = 0.004854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 393.336327 B = 5399.816064 C = 5767.402526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.121 4.121 3 C 0.053 3.947 4 O -0.339 6.339 5 C 0.021 3.979 6 C -0.139 4.139 7 C -0.198 4.198 8 C 0.173 3.827 9 N -0.618 5.618 10 C -0.303 4.303 11 H 0.082 0.918 12 C -0.025 4.025 13 N -0.941 5.941 14 Si 0.954 3.046 15 H -0.265 1.265 16 H -0.278 1.278 17 H -0.247 1.247 18 C -0.194 4.194 19 C -0.099 4.099 20 H 0.061 0.939 21 H 0.061 0.939 22 H 0.073 0.927 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.147 0.853 28 H 0.132 0.868 29 H 0.384 0.616 30 H 0.274 0.726 31 H 0.107 0.893 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.542 -9.149 -0.022 19.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 C -0.022 4.022 4 O -0.254 6.254 5 C -0.026 4.026 6 C -0.159 4.159 7 C -0.222 4.222 8 C 0.061 3.939 9 N -0.232 5.232 10 C -0.432 4.432 11 H 0.100 0.900 12 C -0.222 4.222 13 N -0.582 5.582 14 Si 0.777 3.223 15 H -0.190 1.190 16 H -0.203 1.203 17 H -0.171 1.171 18 C -0.218 4.218 19 C -0.118 4.118 20 H 0.080 0.920 21 H 0.080 0.920 22 H 0.092 0.908 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.164 0.836 28 H 0.150 0.850 29 H 0.219 0.781 30 H 0.084 0.916 31 H 0.125 0.875 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -17.035 -9.144 -0.024 19.334 hybrid contribution 0.211 1.277 0.000 1.294 sum -16.824 -7.867 -0.024 18.573 Atomic orbital electron populations 1.21675 0.92767 1.03141 1.02628 1.21490 0.97181 0.93941 1.03200 1.22978 0.78068 0.99603 1.01521 1.85939 1.22025 1.26904 1.90575 1.18583 0.91775 0.84444 1.07776 1.21011 1.00025 0.90967 1.03853 1.20419 0.91331 0.98495 1.11997 1.18080 0.92224 0.86039 0.97514 1.40848 1.04812 1.03938 1.73634 1.19238 0.81446 0.95258 1.47303 0.90026 1.25775 0.96788 1.01552 0.98097 1.69847 1.09193 1.26748 1.52412 0.85472 0.79094 0.78483 0.79271 1.18985 1.20347 1.17081 1.20446 0.99089 0.91153 1.11136 1.20171 0.92009 0.97093 1.02505 0.91952 0.91962 0.90845 0.91322 0.91318 0.91950 0.91954 0.83563 0.84991 0.78119 0.91634 0.87524 0.85447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.91 71.98 0.71 -1.07 16 2 C -0.12 -2.11 6.30 30.59 0.19 -1.92 16 3 C 0.05 1.19 4.74 71.98 0.34 1.53 16 4 O -0.34 -10.64 10.14 -92.98 -0.94 -11.58 16 5 C 0.02 0.73 6.69 22.54 0.15 0.88 16 6 C -0.14 -4.54 9.03 22.34 0.20 -4.33 16 7 C -0.20 -7.22 9.89 22.42 0.22 -6.99 16 8 C 0.17 7.62 6.62 38.34 0.25 7.87 16 9 N -0.62 -29.46 5.24 -184.25 -0.97 -30.42 16 10 C -0.30 -16.83 10.04 84.04 0.84 -15.99 16 11 H 0.08 4.95 5.91 -2.91 -0.02 4.94 16 12 C -0.02 -1.37 5.50 84.85 0.47 -0.91 16 13 N -0.94 -56.06 13.97 21.64 0.30 -55.76 16 14 Si 0.95 41.04 27.73 68.60 1.90 42.94 16 15 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 16 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 17 H -0.25 -9.54 6.52 99.48 0.65 -8.89 16 18 C -0.19 -8.61 9.30 22.42 0.21 -8.40 16 19 C -0.10 -3.82 9.98 22.35 0.22 -3.60 16 20 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 21 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 22 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 23 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 24 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 25 H 0.06 1.29 7.64 -2.39 -0.02 1.27 16 26 H 0.06 1.29 7.67 -2.39 -0.02 1.27 16 27 H 0.15 3.68 6.29 -2.91 -0.02 3.66 16 28 H 0.13 4.12 8.06 -2.91 -0.02 4.09 16 29 H 0.38 16.58 5.76 -92.71 -0.53 16.05 16 30 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 31 H 0.11 5.14 5.95 -2.91 -0.02 5.12 16 32 H 0.13 4.48 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -62.93 270.17 4.64 -58.29 By element: Atomic # 1 Polarization: 28.93 SS G_CDS: 0.52 Total: 29.45 kcal Atomic # 6 Polarization: -36.74 SS G_CDS: 3.82 Total: -32.92 kcal Atomic # 7 Polarization: -85.51 SS G_CDS: -0.66 Total: -86.18 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: -0.94 Total: -11.58 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 1.90 Total: 42.94 kcal Total: -62.93 4.64 -58.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051786067.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.766 kcal (2) G-P(sol) polarization free energy of solvation -62.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds