Wall clock time and date at job start Mon Mar 30 2020 03:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47436 * 2 1 4 4 H 1.09000 * 109.46659 * 54.99743 * 3 2 1 5 5 C 1.52999 * 109.47319 * 174.99845 * 3 2 1 6 6 N 1.46497 * 109.47015 * 294.99741 * 3 2 1 7 7 C 1.35564 * 119.47506 * 300.00047 * 6 3 2 8 8 C 1.35920 * 122.06243 * 179.97438 * 7 6 3 9 9 C 1.38997 * 120.84124 * 0.02599 * 8 7 6 10 10 C 1.40625 * 118.82967 * 359.97195 * 9 8 7 11 11 C 1.40502 * 120.92328 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99821 * 208.15365 * 11 10 9 13 13 C 1.40046 * 120.00310 * 28.15144 * 11 10 9 14 14 N 1.30841 * 119.99977 * 197.51608 * 13 11 10 15 15 Si 1.86796 * 119.99868 * 17.51728 * 13 11 10 16 16 H 1.48497 * 109.47322 * 270.00262 * 15 13 11 17 17 H 1.48510 * 109.46931 * 30.00172 * 15 13 11 18 18 H 1.48496 * 109.47143 * 149.99651 * 15 13 11 19 19 C 1.34794 * 119.47265 * 120.27349 * 6 3 2 20 20 O 1.21787 * 120.46352 * 0.02562 * 19 6 3 21 21 H 1.08998 * 109.47016 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47248 * 300.00483 * 1 2 3 23 23 H 1.09001 * 109.47112 * 60.00023 * 1 2 3 24 24 H 1.08995 * 109.47248 * 239.99517 * 2 1 3 25 25 H 1.09000 * 109.46648 * 120.00239 * 2 1 3 26 26 H 1.09000 * 109.47152 * 59.99550 * 5 3 2 27 27 H 1.08998 * 109.46920 * 180.02562 * 5 3 2 28 28 H 1.09006 * 109.46649 * 299.99828 * 5 3 2 29 29 H 1.08001 * 118.96519 * 0.02562 * 7 6 3 30 30 H 1.07999 * 119.58186 * 179.97438 * 8 7 6 31 31 H 1.07993 * 120.58511 * 179.97438 * 9 8 7 32 32 H 0.97001 * 120.00226 * 355.45455 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5649 1.4443 0.1258 6 7 1.6526 2.0974 -1.2518 7 6 2.0857 1.5900 -2.4320 8 6 1.7578 2.1548 -3.6240 9 6 0.9562 3.2890 -3.6785 10 6 0.4865 3.8460 -2.4757 11 6 -0.3261 4.9922 -2.4796 12 1 -0.3142 5.6654 -1.6351 13 6 -1.1514 5.2618 -3.5784 14 7 -1.6390 6.4636 -3.7511 15 14 -1.5561 3.9056 -4.7975 16 1 -0.5393 3.8931 -5.8797 17 1 -1.5519 2.5949 -4.0993 18 1 -2.8988 4.1504 -5.3826 19 6 0.8757 3.1982 -1.2115 20 8 0.4972 3.6481 -0.1450 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 3.9995 0.9051 -0.7160 27 1 3.9282 2.4719 0.1262 28 1 3.8532 0.9569 1.0572 29 1 2.7101 0.7088 -2.4247 30 1 2.1255 1.7173 -4.5403 31 1 0.6986 3.7347 -4.6279 32 1 -1.4836 7.1505 -3.0841 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082663582.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:11 Heat of formation + Delta-G solvation = -49.254799 kcal Electronic energy + Delta-G solvation = -15380.668147 eV Core-core repulsion = 12918.897528 eV Total energy + Delta-G solvation = -2461.770620 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.79641 -37.88824 -37.14881 -35.50106 -33.09100 -31.14763 -30.63818 -27.01147 -25.38771 -24.17088 -22.90764 -21.71940 -20.01101 -18.32614 -17.75889 -16.86716 -16.53819 -16.07603 -15.37192 -15.07682 -14.78994 -14.62217 -14.49780 -14.31667 -13.42672 -13.29022 -12.90716 -12.73199 -12.60442 -12.54089 -12.12518 -12.01157 -11.78792 -11.57000 -11.45601 -11.26590 -10.57578 -10.27353 -9.50036 -8.79976 -6.42460 0.38439 1.28182 1.35924 1.55603 1.78714 2.07109 2.16915 2.51865 3.30130 3.65446 4.03410 4.10063 4.15351 4.23279 4.42367 4.53655 4.63137 4.69174 4.79083 4.87593 4.96734 4.98482 5.17357 5.22001 5.32729 5.33737 5.37277 5.51390 5.72754 6.02479 6.26465 6.34173 6.53750 6.74901 7.40607 7.87944 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.036719 B = 0.009854 C = 0.009428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.374208 B = 2840.815550 C = 2969.075931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C 0.102 3.898 4 H 0.071 0.929 5 C -0.148 4.148 6 N -0.475 5.475 7 C -0.007 4.007 8 C -0.145 4.145 9 C -0.270 4.270 10 C -0.030 4.030 11 C -0.504 4.504 12 H 0.031 0.969 13 C 0.004 3.996 14 N -0.834 5.834 15 Si 1.118 2.882 16 H -0.244 1.244 17 H -0.264 1.264 18 H -0.282 1.282 19 C 0.480 3.520 20 O -0.618 6.618 21 H 0.081 0.919 22 H 0.037 0.963 23 H 0.021 0.979 24 H 0.091 0.909 25 H 0.107 0.893 26 H 0.085 0.915 27 H 0.037 0.963 28 H 0.098 0.902 29 H 0.184 0.816 30 H 0.158 0.842 31 H 0.111 0.889 32 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.500 -15.757 0.760 17.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C 0.000 4.000 4 H 0.089 0.911 5 C -0.206 4.206 6 N -0.188 5.188 7 C -0.128 4.128 8 C -0.167 4.167 9 C -0.292 4.292 10 C -0.036 4.036 11 C -0.534 4.534 12 H 0.050 0.950 13 C -0.209 4.209 14 N -0.457 5.457 15 Si 0.937 3.063 16 H -0.169 1.169 17 H -0.189 1.189 18 H -0.209 1.209 19 C 0.281 3.719 20 O -0.507 6.507 21 H 0.100 0.900 22 H 0.056 0.944 23 H 0.040 0.960 24 H 0.109 0.891 25 H 0.126 0.874 26 H 0.104 0.896 27 H 0.056 0.944 28 H 0.117 0.883 29 H 0.201 0.799 30 H 0.175 0.825 31 H 0.129 0.871 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.501 -15.707 0.058 17.406 hybrid contribution 0.319 1.646 1.926 2.554 sum 7.820 -14.061 1.984 16.211 Atomic orbital electron populations 1.21744 0.97085 1.02086 1.00118 1.21890 0.95199 0.93333 1.05127 1.21752 0.97696 0.94939 0.85616 0.91092 1.22092 0.91576 1.02085 1.04821 1.44948 1.41292 1.23989 1.08599 1.21500 1.05130 1.02614 0.83534 1.20378 1.01480 0.97043 0.97804 1.21198 1.08412 1.03740 0.95886 1.19922 0.97307 0.94925 0.91455 1.20254 1.22441 1.06430 1.04258 0.95032 1.28720 0.91188 1.01343 0.99665 1.70608 1.39230 1.02395 1.33454 0.83048 0.76830 0.72211 0.74189 1.16857 1.18853 1.20896 1.19337 0.80549 0.81645 0.90395 1.90626 1.59831 1.67037 1.33163 0.89970 0.94383 0.96011 0.89086 0.87447 0.89619 0.94394 0.88338 0.79919 0.82462 0.87108 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.30 9.80 71.98 0.71 -3.60 16 2 C -0.12 -2.65 5.32 30.59 0.16 -2.48 16 3 C 0.10 3.11 2.60 44.99 0.12 3.23 16 4 H 0.07 2.66 6.87 -2.39 -0.02 2.64 16 5 C -0.15 -3.32 9.15 71.98 0.66 -2.66 16 6 N -0.48 -18.63 1.99 -620.85 -1.23 -19.86 16 7 C -0.01 -0.23 8.95 83.58 0.75 0.52 16 8 C -0.15 -5.17 9.93 21.91 0.22 -4.95 16 9 C -0.27 -12.50 7.39 23.03 0.17 -12.33 16 10 C -0.03 -1.66 5.32 -19.76 -0.11 -1.76 16 11 C -0.50 -31.02 9.17 23.26 0.21 -30.81 16 12 H 0.03 2.16 7.99 -2.91 -0.02 2.14 16 13 C 0.00 0.20 5.43 85.28 0.46 0.66 16 14 N -0.83 -48.61 13.66 21.85 0.30 -48.31 16 15 Si 1.12 50.08 24.90 68.60 1.71 51.79 16 16 H -0.24 -9.60 6.43 99.48 0.64 -8.96 16 17 H -0.26 -11.66 7.01 99.48 0.70 -10.97 16 18 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 19 C 0.48 25.36 7.63 86.62 0.66 26.02 16 20 O -0.62 -37.02 15.96 -4.63 -0.07 -37.10 16 21 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 22 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 23 H 0.02 0.75 7.75 -2.39 -0.02 0.73 16 24 H 0.09 1.67 7.02 -2.39 -0.02 1.65 16 25 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.08 1.51 7.18 -2.39 -0.02 1.49 16 27 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 29 H 0.18 3.89 6.65 -2.91 -0.02 3.88 16 30 H 0.16 4.18 8.06 -2.91 -0.02 4.16 16 31 H 0.11 5.05 4.38 -2.91 -0.01 5.03 16 32 H 0.28 16.19 8.73 -92.71 -0.81 15.38 16 Total: -1.00 -74.31 263.09 5.70 -68.60 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: 0.99 Total: 13.04 kcal Atomic # 6 Polarization: -32.18 SS G_CDS: 4.01 Total: -28.17 kcal Atomic # 7 Polarization: -67.24 SS G_CDS: -0.94 Total: -68.17 kcal Atomic # 8 Polarization: -37.02 SS G_CDS: -0.07 Total: -37.10 kcal Atomic # 14 Polarization: 50.08 SS G_CDS: 1.71 Total: 51.79 kcal Total: -74.31 5.70 -68.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082663582.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.350 kcal (2) G-P(sol) polarization free energy of solvation -74.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds