Wall clock time and date at job start Mon Mar 30 2020 03:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47153 * 2 1 4 4 C 1.52999 * 109.46983 * 120.00035 * 2 1 3 5 5 N 1.46507 * 109.46989 * 174.99760 * 4 2 1 6 6 C 1.35562 * 119.46911 * 89.99573 * 5 4 2 7 7 C 1.35927 * 122.06082 * 179.71627 * 6 5 4 8 8 C 1.38993 * 120.83570 * 0.26746 * 7 6 5 9 9 C 1.40622 * 118.83644 * 359.97438 * 8 7 6 10 10 C 1.40499 * 120.92855 * 179.97438 * 9 8 7 11 11 H 1.08004 * 120.00234 * 203.72111 * 10 9 8 12 12 C 1.40043 * 120.00096 * 23.72928 * 10 9 8 13 13 N 1.30844 * 120.00109 * 17.48489 * 12 10 9 14 14 Si 1.86803 * 120.00003 * 197.49261 * 12 10 9 15 15 H 1.48501 * 109.47093 * 89.99474 * 14 12 10 16 16 H 1.48501 * 109.47313 * 209.99392 * 14 12 10 17 17 H 1.48497 * 109.47240 * 329.99863 * 14 12 10 18 18 C 1.34785 * 119.47216 * 270.24113 * 5 4 2 19 19 O 1.21786 * 120.47000 * 0.02562 * 18 5 4 20 20 H 1.08994 * 109.46820 * 300.00053 * 1 2 3 21 21 H 1.08992 * 109.46906 * 60.00297 * 1 2 3 22 22 H 1.09003 * 109.46837 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.46945 * 239.99779 * 2 1 3 24 24 H 1.09006 * 109.47057 * 180.02562 * 3 2 1 25 25 H 1.09005 * 109.46684 * 299.99778 * 3 2 1 26 26 H 1.08994 * 109.47301 * 60.00241 * 3 2 1 27 27 H 1.08996 * 109.47741 * 54.99825 * 4 2 1 28 28 H 1.08998 * 109.47302 * 294.99723 * 4 2 1 29 29 H 1.08004 * 118.97505 * 0.02562 * 6 5 4 30 30 H 1.07996 * 119.58153 * 180.23498 * 7 6 5 31 31 H 1.08000 * 120.58048 * 180.02562 * 8 7 6 32 32 H 0.97000 * 119.99840 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5002 -0.8264 1.1905 6 6 4.2618 0.1611 1.7219 7 6 5.6202 0.1148 1.7016 8 6 6.2879 -0.9581 1.1229 9 6 5.5333 -2.0007 0.5562 10 6 6.1629 -3.1058 -0.0407 11 1 5.6402 -3.6880 -0.7853 12 6 7.4681 -3.4527 0.3299 13 7 7.9770 -2.9899 1.4429 14 14 8.4826 -4.5759 -0.7649 15 1 9.2432 -3.7582 -1.7437 16 1 9.4303 -5.3571 0.0699 17 1 7.5808 -5.5055 -1.4916 18 6 4.0646 -1.9011 0.6047 19 8 3.3700 -2.7797 0.1263 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5139 -0.8900 24 1 3.1301 1.4424 -0.0005 25 1 1.6767 1.9562 -0.8901 26 1 1.6768 1.9563 0.8899 27 1 1.6055 -1.7198 1.2952 28 1 1.7517 -0.1583 2.1370 29 1 3.7742 1.0089 2.1801 30 1 6.1877 0.9222 2.1402 31 1 7.3673 -0.9908 1.1094 32 1 8.8809 -3.2305 1.6997 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082663820.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:19 Heat of formation + Delta-G solvation = -46.732119 kcal Electronic energy + Delta-G solvation = -15093.057135 eV Core-core repulsion = 12631.395908 eV Total energy + Delta-G solvation = -2461.661228 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.53085 -37.69685 -37.07217 -35.73656 -33.26833 -30.79578 -28.12042 -27.57350 -27.21998 -23.57541 -22.98829 -21.13956 -19.45071 -17.88487 -17.63046 -16.69015 -16.64611 -16.31268 -15.65458 -15.00737 -14.67697 -14.56422 -13.85293 -13.59952 -13.34482 -13.11120 -12.98369 -12.83833 -12.57169 -12.48655 -12.23122 -12.02149 -11.74912 -11.67657 -11.60265 -11.16827 -10.49830 -10.12456 -8.81357 -8.57024 -6.16167 0.60931 1.35116 1.41611 1.49081 1.52990 2.14299 2.28502 2.61867 3.51069 3.82478 3.94436 4.11350 4.27686 4.39368 4.47551 4.66867 4.77653 4.82559 4.89490 4.97139 5.03847 5.04061 5.18893 5.22235 5.36637 5.44511 5.58254 5.86275 5.98365 6.23161 6.49250 6.64892 6.84133 6.88597 7.55301 8.27275 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044884 B = 0.007942 C = 0.007181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.685634 B = 3524.626940 C = 3898.045758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.108 4.108 3 C -0.143 4.143 4 C 0.098 3.902 5 N -0.481 5.481 6 C -0.024 4.024 7 C -0.151 4.151 8 C -0.218 4.218 9 C -0.029 4.029 10 C -0.455 4.455 11 H 0.059 0.941 12 C 0.030 3.970 13 N -0.809 5.809 14 Si 0.987 3.013 15 H -0.255 1.255 16 H -0.258 1.258 17 H -0.268 1.268 18 C 0.473 3.527 19 O -0.621 6.621 20 H 0.079 0.921 21 H 0.068 0.932 22 H 0.047 0.953 23 H 0.033 0.967 24 H 0.043 0.957 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.064 0.936 28 H 0.117 0.883 29 H 0.175 0.825 30 H 0.140 0.860 31 H 0.107 0.893 32 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.605 8.755 0.988 11.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.128 4.128 3 C -0.200 4.200 4 C -0.023 4.023 5 N -0.194 5.194 6 C -0.145 4.145 7 C -0.173 4.173 8 C -0.242 4.242 9 C -0.035 4.035 10 C -0.485 4.485 11 H 0.077 0.923 12 C -0.186 4.186 13 N -0.435 5.435 14 Si 0.807 3.193 15 H -0.179 1.179 16 H -0.182 1.182 17 H -0.193 1.193 18 C 0.274 3.726 19 O -0.510 6.510 20 H 0.098 0.902 21 H 0.087 0.913 22 H 0.067 0.933 23 H 0.052 0.948 24 H 0.062 0.938 25 H 0.082 0.918 26 H 0.099 0.901 27 H 0.082 0.918 28 H 0.135 0.865 29 H 0.192 0.808 30 H 0.158 0.842 31 H 0.125 0.875 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.854 8.262 0.907 10.774 hybrid contribution 0.660 -0.868 -0.415 1.167 sum -6.195 7.394 0.493 9.658 Atomic orbital electron populations 1.21705 0.92022 1.01989 1.03456 1.21399 0.97863 0.97234 0.96277 1.21866 1.00816 0.94169 1.03151 1.22059 0.77835 1.01892 1.00517 1.44816 1.08337 1.17904 1.48323 1.21357 0.91710 0.94440 1.06971 1.20424 0.93290 0.99689 1.03929 1.21166 0.99143 0.94445 1.09414 1.19903 0.88840 0.95986 0.98767 1.19377 0.98959 1.10834 1.19331 0.92260 1.26737 0.98176 0.97885 0.95778 1.69843 1.16446 1.38026 1.19164 0.85143 0.77629 0.77957 0.78620 1.17908 1.18199 1.19263 1.19462 0.90259 0.81791 0.81065 1.90598 1.65445 1.41981 1.52980 0.90158 0.91281 0.93348 0.94825 0.93793 0.91781 0.90052 0.91762 0.86537 0.80805 0.84226 0.87525 0.89690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 9.19 71.98 0.66 -2.22 16 2 C -0.11 -3.16 3.12 -10.79 -0.03 -3.20 16 3 C -0.14 -3.45 8.62 71.98 0.62 -2.83 16 4 C 0.10 3.27 4.84 86.38 0.42 3.69 16 5 N -0.48 -20.60 2.47 -643.31 -1.59 -22.19 16 6 C -0.02 -0.89 8.18 83.58 0.68 -0.21 16 7 C -0.15 -6.35 9.93 21.91 0.22 -6.13 16 8 C -0.22 -11.48 8.81 23.03 0.20 -11.27 16 9 C -0.03 -1.71 5.75 -19.76 -0.11 -1.82 16 10 C -0.46 -27.27 8.81 23.26 0.20 -27.06 16 11 H 0.06 3.69 7.78 -2.91 -0.02 3.66 16 12 C 0.03 1.58 5.18 85.28 0.44 2.02 16 13 N -0.81 -43.22 10.93 21.85 0.24 -42.98 16 14 Si 0.99 40.54 29.60 68.60 2.03 42.57 16 15 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 16 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 17 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 18 C 0.47 26.14 7.62 86.62 0.66 26.80 16 19 O -0.62 -37.68 16.18 -4.62 -0.07 -37.76 16 20 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 21 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 22 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.04 1.26 6.34 -2.38 -0.02 1.24 16 25 H 0.06 1.37 8.14 -2.38 -0.02 1.36 16 26 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.06 2.42 7.41 -2.39 -0.02 2.40 16 28 H 0.12 2.88 7.99 -2.39 -0.02 2.86 16 29 H 0.17 4.65 7.85 -2.91 -0.02 4.63 16 30 H 0.14 4.81 8.06 -2.91 -0.02 4.78 16 31 H 0.11 5.86 6.18 -2.91 -0.02 5.84 16 32 H 0.29 13.85 8.30 -92.71 -0.77 13.08 16 Total: -1.00 -70.73 269.31 5.67 -65.07 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 1.10 Total: 17.53 kcal Atomic # 6 Polarization: -26.20 SS G_CDS: 3.96 Total: -22.24 kcal Atomic # 7 Polarization: -63.81 SS G_CDS: -1.35 Total: -65.16 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: -0.07 Total: -37.76 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 2.03 Total: 42.57 kcal Total: -70.73 5.67 -65.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082663820.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.337 kcal (2) G-P(sol) polarization free energy of solvation -70.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds