Wall clock time and date at job start Mon Mar 30 2020 03:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47119 * 2 1 4 4 C 1.52999 * 109.46973 * 240.00316 * 2 1 3 5 5 C 1.50703 * 109.47425 * 120.00482 * 2 1 3 6 6 C 1.35937 * 118.96718 * 0.20823 * 5 2 1 7 7 C 1.38987 * 120.83840 * 180.26843 * 6 5 2 8 8 C 1.40621 * 118.83149 * 359.50896 * 7 6 5 9 9 C 1.40509 * 120.92513 * 180.27116 * 8 7 6 10 10 H 1.08002 * 119.99675 * 203.71797 * 9 8 7 11 11 C 1.40041 * 119.99889 * 23.72790 * 9 8 7 12 12 N 1.30843 * 120.00242 * 17.47675 * 11 9 8 13 13 Si 1.86806 * 119.99597 * 197.48170 * 11 9 8 14 14 H 1.48502 * 109.46919 * 59.99845 * 13 11 9 15 15 H 1.48498 * 109.46860 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47236 * 299.99683 * 13 11 9 17 17 C 1.47287 * 118.14563 * 0.25261 * 8 7 6 18 18 O 1.21788 * 120.46533 * 180.02562 * 17 8 7 19 19 N 1.34783 * 119.06695 * 359.97438 * 17 8 7 20 20 H 0.97005 * 119.47236 * 180.02562 * 19 17 8 21 21 H 1.09003 * 109.47488 * 299.99572 * 1 2 3 22 22 H 1.08995 * 109.47406 * 60.00089 * 1 2 3 23 23 H 1.09003 * 109.47262 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47421 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47575 * 300.00083 * 3 2 1 26 26 H 1.09007 * 109.47301 * 60.00418 * 3 2 1 27 27 H 1.09005 * 109.47473 * 299.99643 * 4 2 1 28 28 H 1.08999 * 109.47627 * 60.00025 * 4 2 1 29 29 H 1.09001 * 109.47176 * 180.02562 * 4 2 1 30 30 H 1.07999 * 119.57726 * 0.03562 * 6 5 2 31 31 H 1.08000 * 120.58436 * 179.78510 * 7 6 5 32 32 H 0.96996 * 119.99505 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0324 -0.7105 1.2304 6 6 1.1306 -1.2229 2.1091 7 6 1.5509 -1.8807 3.2591 8 6 2.9302 -2.0181 3.4960 9 6 3.4037 -2.6799 4.6414 10 1 4.3921 -2.4643 5.0197 11 6 2.5942 -3.6192 5.2923 12 7 1.5636 -4.1354 4.6732 13 14 2.9859 -4.1350 7.0444 14 1 2.9405 -2.9456 7.9324 15 1 1.9854 -5.1323 7.5021 16 1 4.3426 -4.7367 7.0918 17 6 3.8646 -1.4492 2.5098 18 8 5.0678 -1.5443 2.6727 19 7 3.3694 -0.8228 1.4239 20 1 3.9794 -0.4463 0.7704 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6767 1.9563 0.8901 27 1 1.6767 -1.7489 -1.2494 28 1 1.6766 -0.2074 -2.1393 29 1 3.1299 -0.7216 -1.2491 30 1 0.0742 -1.1142 1.9130 31 1 0.8309 -2.2832 3.9561 32 1 1.0027 -4.7857 5.1242 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082671988.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:18 Heat of formation + Delta-G solvation = -36.337519 kcal Electronic energy + Delta-G solvation = -15133.204260 eV Core-core repulsion = 12671.993776 eV Total energy + Delta-G solvation = -2461.210484 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.63443 -36.98369 -34.65779 -33.77587 -31.40223 -28.83316 -26.97228 -26.76580 -25.27812 -22.43324 -21.13880 -18.94364 -18.11680 -16.13519 -15.73432 -14.80732 -14.71103 -14.17449 -13.74447 -13.50640 -13.47108 -13.27659 -12.26270 -12.11482 -11.66816 -11.41630 -11.37509 -11.34477 -11.16796 -10.84030 -10.67588 -10.50394 -10.15732 -10.13680 -9.70765 -9.35500 -8.57196 -8.38836 -6.91895 -6.67672 -4.14956 2.44236 3.05341 3.08817 3.12956 3.48405 3.88860 4.36313 4.50452 5.12109 5.20008 5.28653 5.59654 5.77599 5.84157 5.86359 6.01863 6.10961 6.13818 6.25742 6.32047 6.40107 6.53558 6.62800 6.75262 6.96739 7.11221 7.53535 7.81489 7.94916 8.22547 8.44299 8.53290 8.79858 8.81195 9.54533 10.09018 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044302 B = 0.008153 C = 0.007333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.880807 B = 3433.694188 C = 3817.303001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.010 4.010 3 C -0.138 4.138 4 C -0.139 4.139 5 C -0.036 4.036 6 C -0.115 4.115 7 C -0.230 4.230 8 C 0.019 3.981 9 C -0.399 4.399 10 H 0.086 0.914 11 C 0.065 3.935 12 N -0.774 5.774 13 Si 0.917 3.083 14 H -0.262 1.262 15 H -0.277 1.277 16 H -0.263 1.263 17 C 0.497 3.503 18 O -0.588 6.588 19 N -0.596 5.596 20 H 0.385 0.615 21 H 0.059 0.941 22 H 0.049 0.951 23 H 0.060 0.940 24 H 0.048 0.952 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.108 0.892 31 H 0.122 0.878 32 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.428 5.127 -5.884 8.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.011 4.011 3 C -0.196 4.196 4 C -0.197 4.197 5 C -0.138 4.138 6 C -0.137 4.137 7 C -0.253 4.253 8 C 0.012 3.988 9 C -0.428 4.428 10 H 0.104 0.896 11 C -0.154 4.154 12 N -0.398 5.398 13 Si 0.741 3.259 14 H -0.186 1.186 15 H -0.202 1.202 16 H -0.188 1.188 17 C 0.295 3.705 18 O -0.474 6.474 19 N -0.230 5.230 20 H 0.220 0.780 21 H 0.078 0.922 22 H 0.068 0.932 23 H 0.079 0.921 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.126 0.874 31 H 0.139 0.861 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.049 4.803 -5.631 8.436 hybrid contribution 0.270 -0.229 0.352 0.499 sum -3.779 4.574 -5.279 7.941 Atomic orbital electron populations 1.21855 0.94091 1.02017 1.01115 1.19253 0.95569 0.93958 0.92359 1.21887 1.00580 0.95804 1.01294 1.21890 1.00591 1.00661 0.96526 1.18920 0.83015 1.11741 1.00171 1.20021 0.97085 1.01039 0.95602 1.21023 0.95013 1.09588 0.99633 1.19533 0.91576 0.95006 0.92646 1.19355 1.01480 1.15888 1.06073 0.89640 1.25994 0.94312 0.94932 1.00150 1.69840 1.12882 1.20253 1.36793 0.86209 0.79345 0.79017 0.81358 1.18612 1.20179 1.18771 1.19404 0.89000 0.79952 0.82117 1.90699 1.15978 1.62906 1.77813 1.42650 1.06578 1.50633 1.23115 0.77999 0.92159 0.93245 0.92108 0.93279 0.93064 0.92415 0.92389 0.93056 0.93290 0.87364 0.86059 0.90587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 7.10 37.16 0.26 -1.53 16 2 C -0.01 -0.16 0.84 -155.66 -0.13 -0.29 16 3 C -0.14 -1.88 8.36 37.15 0.31 -1.57 16 4 C -0.14 -1.94 8.36 37.16 0.31 -1.63 16 5 C -0.04 -0.72 5.47 -81.77 -0.45 -1.16 16 6 C -0.11 -2.50 8.86 -40.13 -0.36 -2.86 16 7 C -0.23 -5.88 8.81 -38.41 -0.34 -6.22 16 8 C 0.02 0.51 5.75 -104.46 -0.60 -0.09 16 9 C -0.40 -11.10 8.81 -38.05 -0.34 -11.43 16 10 H 0.09 2.40 7.78 -52.49 -0.41 1.99 16 11 C 0.07 1.66 5.18 -17.30 -0.09 1.57 16 12 N -0.77 -19.81 10.93 55.55 0.61 -19.20 16 13 Si 0.92 18.91 29.60 -169.99 -5.03 13.88 16 14 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 15 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 16 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 17 C 0.50 13.22 7.92 -12.58 -0.10 13.12 16 18 O -0.59 -17.07 17.44 5.11 0.09 -16.99 16 19 N -0.60 -12.99 4.98 -9.29 -0.05 -13.04 16 20 H 0.39 7.43 7.39 -40.82 -0.30 7.12 16 21 H 0.06 0.82 7.46 -51.93 -0.39 0.43 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.06 0.84 7.44 -51.93 -0.39 0.46 16 24 H 0.05 0.67 7.47 -51.93 -0.39 0.28 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.68 7.47 -51.93 -0.39 0.29 16 30 H 0.11 2.07 5.63 -52.49 -0.30 1.77 16 31 H 0.12 3.21 6.18 -52.49 -0.32 2.88 16 32 H 0.28 6.54 8.30 -40.82 -0.34 6.20 16 LS Contribution 265.56 15.07 4.00 4.00 Total: -1.00 -29.72 265.56 -6.02 -35.74 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -4.13 Total: 7.70 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -1.51 Total: -12.10 kcal Atomic # 7 Polarization: -32.80 SS G_CDS: 0.56 Total: -32.24 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: 0.09 Total: -16.99 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -29.72 -6.02 -35.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082671988.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.597 kcal (2) G-P(sol) polarization free energy of solvation -29.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds