Wall clock time and date at job start Mon Mar 30 2020 03:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47119 * 2 1 4 4 C 1.52999 * 109.46973 * 240.00316 * 2 1 3 5 5 C 1.50703 * 109.47425 * 120.00482 * 2 1 3 6 6 C 1.35937 * 118.96718 * 0.20823 * 5 2 1 7 7 C 1.38987 * 120.83840 * 180.26843 * 6 5 2 8 8 C 1.40621 * 118.83149 * 359.50896 * 7 6 5 9 9 C 1.40509 * 120.92513 * 180.27116 * 8 7 6 10 10 H 1.08002 * 119.99675 * 203.71797 * 9 8 7 11 11 C 1.40041 * 119.99889 * 23.72790 * 9 8 7 12 12 N 1.30843 * 120.00242 * 17.47675 * 11 9 8 13 13 Si 1.86806 * 119.99597 * 197.48170 * 11 9 8 14 14 H 1.48502 * 109.46919 * 59.99845 * 13 11 9 15 15 H 1.48498 * 109.46860 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47236 * 299.99683 * 13 11 9 17 17 C 1.47287 * 118.14563 * 0.25261 * 8 7 6 18 18 O 1.21788 * 120.46533 * 180.02562 * 17 8 7 19 19 N 1.34783 * 119.06695 * 359.97438 * 17 8 7 20 20 H 0.97005 * 119.47236 * 180.02562 * 19 17 8 21 21 H 1.09003 * 109.47488 * 299.99572 * 1 2 3 22 22 H 1.08995 * 109.47406 * 60.00089 * 1 2 3 23 23 H 1.09003 * 109.47262 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47421 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47575 * 300.00083 * 3 2 1 26 26 H 1.09007 * 109.47301 * 60.00418 * 3 2 1 27 27 H 1.09005 * 109.47473 * 299.99643 * 4 2 1 28 28 H 1.08999 * 109.47627 * 60.00025 * 4 2 1 29 29 H 1.09001 * 109.47176 * 180.02562 * 4 2 1 30 30 H 1.07999 * 119.57726 * 0.03562 * 6 5 2 31 31 H 1.08000 * 120.58436 * 179.78510 * 7 6 5 32 32 H 0.96996 * 119.99505 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0324 -0.7105 1.2304 6 6 1.1306 -1.2229 2.1091 7 6 1.5509 -1.8807 3.2591 8 6 2.9302 -2.0181 3.4960 9 6 3.4037 -2.6799 4.6414 10 1 4.3921 -2.4643 5.0197 11 6 2.5942 -3.6192 5.2923 12 7 1.5636 -4.1354 4.6732 13 14 2.9859 -4.1350 7.0444 14 1 2.9405 -2.9456 7.9324 15 1 1.9854 -5.1323 7.5021 16 1 4.3426 -4.7367 7.0918 17 6 3.8646 -1.4492 2.5098 18 8 5.0678 -1.5443 2.6727 19 7 3.3694 -0.8228 1.4239 20 1 3.9794 -0.4463 0.7704 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 3.1300 1.4425 0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6767 1.9563 0.8901 27 1 1.6767 -1.7489 -1.2494 28 1 1.6766 -0.2074 -2.1393 29 1 3.1299 -0.7216 -1.2491 30 1 0.0742 -1.1142 1.9130 31 1 0.8309 -2.2832 3.9561 32 1 1.0027 -4.7857 5.1242 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082671988.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:18 Heat of formation + Delta-G solvation = -55.329145 kcal Electronic energy + Delta-G solvation = -15134.027799 eV Core-core repulsion = 12671.993776 eV Total energy + Delta-G solvation = -2462.034023 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.50183 -38.68179 -36.55777 -35.51081 -33.31082 -30.65483 -28.07109 -27.98463 -27.13418 -24.31428 -23.03661 -20.42390 -20.01392 -17.96860 -17.59876 -16.67966 -16.42485 -15.94643 -15.42126 -15.03179 -14.89831 -14.69920 -13.83891 -13.38371 -13.26804 -13.18382 -12.94746 -12.65261 -12.52622 -12.34544 -12.22959 -11.96682 -11.67473 -11.61649 -11.48740 -11.20970 -10.59294 -10.33580 -8.81852 -8.58281 -6.14532 0.58347 1.36242 1.41479 1.48364 1.50493 2.18772 2.49516 2.61300 3.52768 3.78554 4.01180 4.18626 4.34160 4.51251 4.79451 4.79998 4.91610 4.94454 4.98826 5.08088 5.10116 5.15817 5.21046 5.29995 5.50091 5.52661 5.63677 5.84897 5.98266 6.31107 6.47719 6.58971 6.82666 6.85303 7.53994 8.27320 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.044302 B = 0.008153 C = 0.007333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.880807 B = 3433.694188 C = 3817.303001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.014 4.014 3 C -0.137 4.137 4 C -0.139 4.139 5 C 0.007 3.993 6 C -0.146 4.146 7 C -0.213 4.213 8 C -0.029 4.029 9 C -0.455 4.455 10 H 0.061 0.939 11 C 0.030 3.970 12 N -0.808 5.808 13 Si 0.987 3.013 14 H -0.259 1.259 15 H -0.256 1.256 16 H -0.266 1.266 17 C 0.477 3.523 18 O -0.626 6.626 19 N -0.580 5.580 20 H 0.401 0.599 21 H 0.059 0.941 22 H 0.082 0.918 23 H 0.055 0.945 24 H 0.045 0.955 25 H 0.085 0.915 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.086 0.914 29 H 0.045 0.955 30 H 0.142 0.858 31 H 0.109 0.891 32 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.113 6.385 -7.720 11.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.014 4.014 3 C -0.195 4.195 4 C -0.196 4.196 5 C -0.097 4.097 6 C -0.168 4.168 7 C -0.236 4.236 8 C -0.035 4.035 9 C -0.484 4.484 10 H 0.080 0.920 11 C -0.186 4.186 12 N -0.433 5.433 13 Si 0.807 3.193 14 H -0.183 1.183 15 H -0.179 1.179 16 H -0.191 1.191 17 C 0.277 3.723 18 O -0.516 6.516 19 N -0.212 5.212 20 H 0.238 0.762 21 H 0.078 0.922 22 H 0.101 0.899 23 H 0.074 0.926 24 H 0.064 0.936 25 H 0.104 0.896 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.105 0.895 29 H 0.064 0.936 30 H 0.159 0.841 31 H 0.127 0.873 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.747 6.082 -7.507 11.241 hybrid contribution 0.681 -0.430 0.613 1.012 sum -5.066 5.653 -6.894 10.254 Atomic orbital electron populations 1.21879 0.92099 1.02302 1.02844 1.19504 0.97190 0.94654 0.90097 1.21886 1.00443 0.94307 1.02830 1.21896 1.00440 1.00326 0.96967 1.19946 0.81773 1.07301 1.00672 1.20348 0.99300 1.02050 0.95100 1.21187 0.94087 1.08054 1.00290 1.19824 0.92635 0.97236 0.93777 1.19369 1.01689 1.19056 1.08334 0.92037 1.26734 0.93948 0.94028 1.03868 1.69832 1.13942 1.21174 1.38338 0.85190 0.79231 0.78936 0.75982 1.18315 1.17947 1.19108 1.19462 0.88575 0.81023 0.83201 1.90646 1.17203 1.64859 1.78897 1.42631 1.07833 1.48753 1.22011 0.76159 0.92221 0.89895 0.92593 0.93604 0.89587 0.92995 0.93405 0.89509 0.93634 0.84082 0.87267 0.89654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 7.10 71.98 0.51 -2.45 16 2 C -0.01 -0.36 0.84 -52.93 -0.04 -0.40 16 3 C -0.14 -3.10 8.36 71.98 0.60 -2.50 16 4 C -0.14 -3.26 8.36 71.98 0.60 -2.66 16 5 C 0.01 0.27 5.47 41.45 0.23 0.50 16 6 C -0.15 -6.18 8.86 21.91 0.19 -5.99 16 7 C -0.21 -11.11 8.81 23.03 0.20 -10.91 16 8 C -0.03 -1.68 5.75 -19.76 -0.11 -1.80 16 9 C -0.45 -26.93 8.81 23.26 0.20 -26.72 16 10 H 0.06 3.76 7.78 -2.91 -0.02 3.74 16 11 C 0.03 1.57 5.18 85.28 0.44 2.01 16 12 N -0.81 -42.62 10.93 21.85 0.24 -42.38 16 13 Si 0.99 40.06 29.60 68.60 2.03 42.09 16 14 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 15 H -0.26 -9.38 7.11 99.48 0.71 -8.68 16 16 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 17 C 0.48 26.23 7.92 86.62 0.69 26.91 16 18 O -0.63 -38.05 17.44 -4.63 -0.08 -38.13 16 19 N -0.58 -24.91 4.98 -301.47 -1.50 -26.41 16 20 H 0.40 14.91 7.39 -92.70 -0.69 14.22 16 21 H 0.06 1.35 7.46 -2.39 -0.02 1.33 16 22 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.06 1.32 7.44 -2.39 -0.02 1.30 16 24 H 0.04 1.07 7.47 -2.39 -0.02 1.05 16 25 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 27 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 28 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.04 1.10 7.47 -2.39 -0.02 1.08 16 30 H 0.14 5.03 5.63 -2.91 -0.02 5.02 16 31 H 0.11 5.93 6.18 -2.91 -0.02 5.92 16 32 H 0.29 13.74 8.30 -92.71 -0.77 12.97 16 Total: -1.00 -68.51 265.56 4.64 -63.87 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: 0.44 Total: 24.96 kcal Atomic # 6 Polarization: -27.51 SS G_CDS: 3.51 Total: -24.00 kcal Atomic # 7 Polarization: -67.53 SS G_CDS: -1.26 Total: -68.79 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -0.08 Total: -38.13 kcal Atomic # 14 Polarization: 40.06 SS G_CDS: 2.03 Total: 42.09 kcal Total: -68.51 4.64 -63.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082671988.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.544 kcal (2) G-P(sol) polarization free energy of solvation -68.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds