Wall clock time and date at job start Mon Mar 30 2020 03:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35897 * 117.00233 * 2 1 4 4 C 1.38731 * 120.05660 * 359.95111 * 3 2 1 5 5 C 1.38150 * 119.94616 * 180.02562 * 4 3 2 6 6 C 1.38265 * 120.05296 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.94041 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47250 * 270.00005 * 7 6 5 9 9 N 1.46898 * 109.47347 * 29.99886 * 7 6 5 10 10 C 1.50704 * 109.46763 * 150.00188 * 7 6 5 11 11 H 1.07995 * 119.99913 * 359.97438 * 10 7 6 12 12 C 1.37881 * 119.99549 * 180.02562 * 10 7 6 13 13 N 1.31507 * 119.99996 * 359.97438 * 12 10 7 14 14 Si 1.86800 * 119.99557 * 179.97438 * 12 10 7 15 15 H 1.48498 * 109.47420 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47131 * 119.99688 * 14 12 10 17 17 H 1.48506 * 109.46906 * 239.99549 * 14 12 10 18 18 C 1.38264 * 120.11373 * 0.02562 * 6 5 4 19 19 C 1.38147 * 120.05455 * 359.97438 * 18 6 5 20 20 H 1.08998 * 109.46964 * 60.00006 * 1 2 3 21 21 H 1.08993 * 109.47429 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.46759 * 300.00743 * 1 2 3 23 23 H 1.08002 * 120.02802 * 0.04677 * 4 3 2 24 24 H 1.08002 * 119.97142 * 180.27626 * 5 4 3 25 25 H 1.08999 * 109.47202 * 59.99651 * 8 7 6 26 26 H 1.08993 * 109.47240 * 180.02562 * 8 7 6 27 27 H 1.09004 * 109.47302 * 300.00216 * 8 7 6 28 28 H 1.00908 * 110.99679 * 59.99639 * 9 7 6 29 29 H 1.00892 * 111.00427 * 183.94864 * 9 7 6 30 30 H 0.97005 * 120.00091 * 180.02562 * 13 12 10 31 31 H 1.07998 * 119.97093 * 179.97438 * 18 6 5 32 32 H 1.07999 * 120.02648 * 180.02562 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2917 2.3751 -0.0010 5 6 1.9213 3.6048 -0.0016 6 6 3.3021 3.6757 -0.0016 7 6 3.9863 5.0185 -0.0028 8 6 4.2178 5.4717 -1.4456 9 7 3.1399 5.9999 0.6888 10 6 5.3107 4.9079 0.7077 11 1 5.6252 3.9603 1.1193 12 6 6.1203 6.0170 0.8332 13 7 5.7370 7.1710 0.3324 14 14 7.7616 5.8801 1.7145 15 1 7.9573 4.4846 2.1828 16 1 8.8568 6.2477 0.7812 17 1 7.7755 6.7997 2.8806 18 6 4.0562 2.5168 -0.0017 19 6 3.4314 1.2847 -0.0011 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 0.2130 2.3202 -0.0011 24 1 1.3344 4.5114 0.0022 25 1 3.2599 5.5515 -1.9596 26 1 4.7131 6.4426 -1.4465 27 1 4.8459 4.7434 -1.9589 28 1 2.9722 5.7230 1.6446 29 1 3.5466 6.9223 0.6457 30 1 6.3067 7.9511 0.4204 31 1 5.1346 2.5749 -0.0021 32 1 4.0209 0.3798 -0.0007 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084350051.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:24 Heat of formation + Delta-G solvation = -32.447816 kcal Electronic energy + Delta-G solvation = -15009.959172 eV Core-core repulsion = 12548.917358 eV Total energy + Delta-G solvation = -2461.041814 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.96058 -38.98717 -36.56265 -33.43915 -31.87062 -30.48187 -28.94863 -27.86383 -27.24214 -23.65899 -23.09238 -20.86103 -18.96093 -18.29826 -17.12598 -16.70860 -16.51879 -16.08381 -15.41721 -15.03983 -14.90648 -14.33011 -14.01848 -13.88097 -13.32538 -13.13668 -12.88191 -12.72867 -12.60754 -12.32770 -12.15320 -11.81677 -11.59820 -11.43699 -11.22612 -10.57728 -9.74939 -9.07914 -8.80201 -8.00995 -6.24623 0.59192 0.70641 1.37800 1.42900 1.51534 2.41333 2.50113 3.02316 3.16544 4.07332 4.11345 4.28780 4.44394 4.45904 4.56574 4.72559 4.77858 4.79870 4.92263 5.09092 5.18402 5.27702 5.40833 5.52536 5.70335 5.74114 5.94267 6.03300 6.06566 6.28192 6.61483 6.78272 7.06435 7.21245 7.51377 8.90586 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.045396 B = 0.007660 C = 0.006973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.641895 B = 3654.647601 C = 4014.636907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.337 6.337 3 C 0.102 3.898 4 C -0.210 4.210 5 C -0.078 4.078 6 C -0.095 4.095 7 C 0.261 3.739 8 C -0.113 4.113 9 N -0.836 5.836 10 C -0.552 4.552 11 H 0.053 0.947 12 C 0.028 3.972 13 N -0.907 5.907 14 Si 0.947 3.053 15 H -0.275 1.275 16 H -0.283 1.283 17 H -0.283 1.283 18 C -0.085 4.085 19 C -0.167 4.167 20 H 0.061 0.939 21 H 0.121 0.879 22 H 0.060 0.940 23 H 0.148 0.852 24 H 0.130 0.870 25 H 0.024 0.976 26 H 0.063 0.937 27 H 0.025 0.975 28 H 0.315 0.685 29 H 0.345 0.655 30 H 0.263 0.737 31 H 0.121 0.879 32 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.252 -9.267 -0.316 12.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.251 6.251 3 C 0.057 3.943 4 C -0.228 4.228 5 C -0.096 4.096 6 C -0.096 4.096 7 C 0.169 3.831 8 C -0.171 4.171 9 N -0.364 5.364 10 C -0.592 4.592 11 H 0.071 0.929 12 C -0.172 4.172 13 N -0.546 5.546 14 Si 0.774 3.226 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.209 1.209 18 C -0.104 4.104 19 C -0.185 4.185 20 H 0.079 0.921 21 H 0.139 0.861 22 H 0.079 0.921 23 H 0.165 0.835 24 H 0.148 0.852 25 H 0.043 0.957 26 H 0.082 0.918 27 H 0.044 0.956 28 H 0.124 0.876 29 H 0.160 0.840 30 H 0.073 0.927 31 H 0.139 0.861 32 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.675 -9.450 -0.904 12.860 hybrid contribution 1.810 0.541 1.050 2.162 sum -6.864 -8.909 0.146 11.247 Atomic orbital electron populations 1.23296 0.76805 1.05356 1.02029 1.85996 1.23240 1.26657 1.89240 1.19013 0.92238 0.84560 0.98484 1.21399 1.00648 0.91650 1.09108 1.21009 0.94134 0.97428 0.97045 1.20284 0.93845 0.95795 0.99664 1.17234 0.88244 0.85911 0.91700 1.21572 0.97902 1.01557 0.96079 1.59406 1.51394 1.07200 1.18420 1.22260 1.04942 0.95733 1.36234 0.92919 1.25564 1.00550 0.95289 0.95766 1.69790 1.38515 1.00392 1.45938 0.85677 0.80705 0.77825 0.78344 1.19931 1.20914 1.20922 1.21038 1.00228 0.91319 0.97805 1.20519 0.92013 0.98201 1.07813 0.92051 0.86085 0.92115 0.83471 0.85204 0.95662 0.91843 0.95582 0.87647 0.84031 0.92729 0.86121 0.84772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.47 16 2 O -0.34 -9.70 10.50 -92.39 -0.97 -10.67 16 3 C 0.10 3.40 6.69 22.51 0.15 3.56 16 4 C -0.21 -6.80 9.04 22.37 0.20 -6.60 16 5 C -0.08 -2.97 9.31 22.26 0.21 -2.77 16 6 C -0.10 -4.13 4.79 -19.85 -0.10 -4.22 16 7 C 0.26 12.56 0.76 2.04 0.00 12.56 16 8 C -0.11 -5.51 8.49 71.98 0.61 -4.90 16 9 N -0.84 -38.85 7.72 -157.51 -1.22 -40.06 16 10 C -0.55 -28.82 7.55 25.60 0.19 -28.63 16 11 H 0.05 2.78 6.03 -2.91 -0.02 2.76 16 12 C 0.03 1.48 5.22 84.66 0.44 1.92 16 13 N -0.91 -48.14 9.57 21.45 0.21 -47.94 16 14 Si 0.95 42.36 29.54 68.60 2.03 44.39 16 15 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 16 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 17 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 18 C -0.09 -3.53 8.88 22.25 0.20 -3.33 16 19 C -0.17 -6.02 9.99 22.37 0.22 -5.80 16 20 H 0.06 1.04 7.66 -2.39 -0.02 1.02 16 21 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 22 H 0.06 1.04 7.66 -2.39 -0.02 1.02 16 23 H 0.15 3.74 6.30 -2.91 -0.02 3.72 16 24 H 0.13 4.89 7.39 -2.91 -0.02 4.87 16 25 H 0.02 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.06 3.34 6.07 -2.39 -0.01 3.33 16 27 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 28 H 0.31 14.29 8.98 -89.69 -0.81 13.48 16 29 H 0.34 17.23 6.99 -89.70 -0.63 16.60 16 30 H 0.26 13.44 8.31 -92.70 -0.77 12.67 16 31 H 0.12 5.18 6.42 -2.91 -0.02 5.16 16 32 H 0.13 4.27 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -56.47 263.48 3.00 -53.47 By element: Atomic # 1 Polarization: 37.85 SS G_CDS: -0.29 Total: 37.55 kcal Atomic # 6 Polarization: -39.98 SS G_CDS: 3.25 Total: -36.74 kcal Atomic # 7 Polarization: -86.99 SS G_CDS: -1.01 Total: -88.00 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: -0.97 Total: -10.67 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -56.47 3.00 -53.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084350051.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.017 kcal (2) G-P(sol) polarization free energy of solvation -56.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds