Wall clock time and date at job start Mon Mar 30 2020 02:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34766 * 126.67765 * 2 1 4 4 O 1.34524 * 108.48278 * 179.97438 * 3 2 1 5 5 C 1.33826 * 109.42003 * 0.03247 * 4 3 2 6 6 C 1.34892 * 108.29834 * 359.94467 * 5 4 3 7 7 C 1.50632 * 124.56059 * 180.02562 * 6 5 4 8 8 N 1.46901 * 109.68652 * 256.70293 * 7 6 5 9 9 C 1.50703 * 109.68104 * 136.18428 * 7 6 5 10 10 H 1.08006 * 120.00075 * 144.65505 * 9 7 6 11 11 C 1.37877 * 120.00212 * 324.65082 * 9 7 6 12 12 N 1.31511 * 119.99888 * 167.58321 * 11 9 7 13 13 Si 1.86802 * 119.99942 * 347.58566 * 11 9 7 14 14 H 1.48494 * 109.46974 * 94.40990 * 13 11 9 15 15 H 1.48501 * 109.47089 * 214.41114 * 13 11 9 16 16 H 1.48504 * 109.47040 * 334.41238 * 13 11 9 17 17 C 1.53402 * 108.38305 * 16.41436 * 7 6 5 18 18 C 1.53121 * 109.42128 * 310.42241 * 17 7 6 19 19 C 1.50925 * 127.80487 * 179.97438 * 5 4 3 20 20 H 1.09005 * 109.47143 * 270.03331 * 1 2 3 21 21 H 1.08995 * 109.47162 * 30.03747 * 1 2 3 22 22 H 1.09004 * 109.47121 * 150.04044 * 1 2 3 23 23 H 1.07998 * 125.75935 * 359.97438 * 3 2 1 24 24 H 1.00902 * 110.99743 * 179.82828 * 8 7 6 25 25 H 1.00894 * 110.99908 * 303.78495 * 8 7 6 26 26 H 0.97010 * 119.99843 * 179.97438 * 12 11 9 27 27 H 1.09002 * 109.48195 * 190.43144 * 17 7 6 28 28 H 1.09005 * 109.47055 * 70.40431 * 17 7 6 29 29 H 1.08998 * 109.45906 * 309.95246 * 18 17 7 30 30 H 1.08997 * 109.45406 * 189.99320 * 18 17 7 31 31 H 1.09006 * 109.67319 * 77.03636 * 19 5 4 32 32 H 1.09000 * 109.70266 * 316.52558 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3120 1.0808 0.0000 4 8 3.5900 0.6608 0.0006 5 6 3.6186 -0.6772 0.0002 6 6 2.3472 -1.1280 0.0007 7 6 1.9564 -2.5827 0.0010 8 7 1.5204 -2.9783 -1.3449 9 6 0.8362 -2.8071 0.9838 10 1 0.0654 -3.5323 0.7678 11 6 0.7951 -2.0867 2.1587 12 7 -0.2923 -2.0962 2.8982 13 14 2.2841 -1.0970 2.6999 14 1 2.1417 0.3059 2.2345 15 1 2.3816 -1.1196 4.1815 16 1 3.5127 -1.6906 2.1139 17 6 3.1796 -3.4122 0.4122 18 6 4.3894 -2.9835 -0.4228 19 6 4.8305 -1.5766 0.0001 20 1 -0.3634 0.0006 1.0277 21 1 -0.3633 0.8896 -0.5144 22 1 -0.3633 -0.8904 -0.5132 23 1 1.9861 2.1105 -0.0004 24 1 1.2562 -3.9519 -1.3677 25 1 0.7661 -2.3912 -1.6677 26 1 -0.3210 -1.5897 3.7250 27 1 2.9761 -4.4693 0.2414 28 1 3.3909 -3.2486 1.4690 29 1 4.1186 -2.9785 -1.4786 30 1 5.2085 -3.6844 -0.2615 31 1 5.2624 -1.6106 1.0004 32 1 5.5695 -1.1974 -0.7058 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084350267.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:22 Heat of formation + Delta-G solvation = 0.392939 kcal Electronic energy + Delta-G solvation = -16361.898526 eV Core-core repulsion = 13902.280794 eV Total energy + Delta-G solvation = -2459.617732 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.74594 -38.89986 -35.51332 -34.08382 -33.42690 -30.30118 -29.36167 -28.08537 -26.43645 -23.17306 -22.90829 -20.75533 -19.85676 -18.70086 -17.68434 -17.21897 -16.47542 -16.15603 -15.31037 -15.17590 -15.01001 -14.24793 -14.05074 -13.83545 -13.58739 -13.33812 -13.17178 -12.87645 -12.70580 -12.49180 -12.32548 -11.93756 -11.49765 -11.23808 -11.04596 -10.50706 -9.88859 -9.21877 -8.91094 -8.27764 -6.28595 0.86381 1.38428 1.44395 1.46300 1.82329 2.19111 2.44240 3.10944 3.86331 4.08265 4.14699 4.18382 4.29363 4.47753 4.49371 4.69162 4.77189 4.87536 4.94551 5.00527 5.05250 5.18246 5.19969 5.41791 5.50491 5.59319 5.65862 5.68441 5.86925 6.21006 6.43420 6.49926 6.79869 6.93747 7.44290 8.85320 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.024181 B = 0.019591 C = 0.016759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.662003 B = 1428.870808 C = 1670.378818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.168 4.168 3 C -0.073 4.073 4 O -0.182 6.182 5 C -0.036 4.036 6 C -0.162 4.162 7 C 0.277 3.723 8 N -0.824 5.824 9 C -0.534 4.534 10 H 0.033 0.967 11 C 0.058 3.942 12 N -0.937 5.937 13 Si 0.887 3.113 14 H -0.259 1.259 15 H -0.333 1.333 16 H -0.213 1.213 17 C -0.115 4.115 18 C -0.103 4.103 19 C -0.033 4.033 20 H 0.040 0.960 21 H 0.075 0.925 22 H 0.055 0.945 23 H 0.228 0.772 24 H 0.333 0.667 25 H 0.329 0.671 26 H 0.257 0.743 27 H 0.059 0.941 28 H 0.047 0.953 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.813 3.522 -7.047 11.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.169 4.169 3 C -0.139 4.139 4 O -0.079 6.079 5 C -0.087 4.087 6 C -0.164 4.164 7 C 0.184 3.816 8 N -0.350 5.350 9 C -0.573 4.573 10 H 0.052 0.948 11 C -0.142 4.142 12 N -0.576 5.576 13 Si 0.717 3.283 14 H -0.185 1.185 15 H -0.264 1.264 16 H -0.136 1.136 17 C -0.154 4.154 18 C -0.140 4.140 19 C -0.070 4.070 20 H 0.059 0.941 21 H 0.094 0.906 22 H 0.074 0.926 23 H 0.244 0.756 24 H 0.145 0.855 25 H 0.140 0.860 26 H 0.066 0.934 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.738 3.933 -7.163 12.713 hybrid contribution -1.351 0.207 1.510 2.037 sum 8.388 4.140 -5.653 10.929 Atomic orbital electron populations 1.19954 0.89316 1.01519 1.00858 1.20321 0.97763 0.92930 1.05895 1.24229 0.79719 1.00354 1.09624 1.83808 1.29733 1.22019 1.72310 1.22864 0.98325 0.80820 1.06675 1.20311 0.92016 0.97394 1.06715 1.17070 0.91883 0.86126 0.86475 1.59204 1.43503 1.07448 1.24848 1.21734 1.09326 1.22103 1.04147 0.94839 1.25384 0.96548 0.96011 0.96241 1.70106 1.28573 1.43649 1.15296 0.86931 0.85042 0.82140 0.74205 1.18481 1.26369 1.13566 1.21974 0.95075 0.99496 0.98823 1.21554 0.97682 0.93913 1.00876 1.20410 0.91263 0.92207 1.03120 0.94094 0.90619 0.92621 0.75586 0.85531 0.85998 0.93361 0.92224 0.93432 0.90605 0.89022 0.89958 0.87838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.47 8.85 71.24 0.63 -1.84 16 2 C -0.17 -7.04 3.75 -20.07 -0.08 -7.12 16 3 C -0.07 -2.69 10.59 67.02 0.71 -1.98 16 4 O -0.18 -6.94 10.60 -0.14 0.00 -6.95 16 5 C -0.04 -1.41 5.01 24.99 0.13 -1.29 16 6 C -0.16 -6.98 2.53 -20.07 -0.05 -7.03 16 7 C 0.28 12.17 0.63 2.15 0.00 12.17 16 8 N -0.82 -32.10 8.43 -157.05 -1.32 -33.42 16 9 C -0.53 -28.74 7.58 25.60 0.19 -28.55 16 10 H 0.03 2.01 8.06 -2.91 -0.02 1.99 16 11 C 0.06 3.26 3.71 84.66 0.31 3.58 16 12 N -0.94 -57.38 13.96 21.45 0.30 -57.08 16 13 Si 0.89 44.32 21.87 68.60 1.50 45.82 16 14 H -0.26 -12.69 4.91 99.48 0.49 -12.21 16 15 H -0.33 -17.71 7.11 99.48 0.71 -17.00 16 16 H -0.21 -9.57 2.82 99.48 0.28 -9.29 16 17 C -0.12 -4.54 4.55 30.77 0.14 -4.40 16 18 C -0.10 -3.18 5.88 30.77 0.18 -3.00 16 19 C -0.03 -1.04 5.80 30.05 0.17 -0.86 16 20 H 0.04 1.95 7.35 -2.38 -0.02 1.93 16 21 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 22 H 0.05 2.43 6.90 -2.39 -0.02 2.41 16 23 H 0.23 6.25 8.06 -2.91 -0.02 6.22 16 24 H 0.33 12.28 9.00 -89.69 -0.81 11.47 16 25 H 0.33 12.98 8.25 -89.70 -0.74 12.24 16 26 H 0.26 15.26 8.31 -92.70 -0.77 14.49 16 27 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 28 H 0.05 2.03 5.14 -2.38 -0.01 2.01 16 29 H 0.08 2.38 7.72 -2.39 -0.02 2.36 16 30 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.08 2.47 7.45 -2.38 -0.02 2.46 16 32 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -65.12 237.40 1.77 -63.35 By element: Atomic # 1 Polarization: 29.64 SS G_CDS: -1.05 Total: 28.60 kcal Atomic # 6 Polarization: -42.66 SS G_CDS: 2.34 Total: -40.32 kcal Atomic # 7 Polarization: -89.48 SS G_CDS: -1.02 Total: -90.50 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: 0.00 Total: -6.95 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.50 Total: 45.82 kcal Total: -65.12 1.77 -63.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084350267.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.742 kcal (2) G-P(sol) polarization free energy of solvation -65.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds