Wall clock time and date at job start Mon Mar 30 2020 02:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34774 * 126.67625 * 2 1 4 4 O 1.34516 * 108.48297 * 180.02562 * 3 2 1 5 5 C 1.33831 * 109.41779 * 359.95668 * 4 3 2 6 6 C 1.34887 * 108.29970 * 0.07823 * 5 4 3 7 7 C 1.50642 * 124.55921 * 179.89542 * 6 5 4 8 8 N 1.46905 * 109.68032 * 103.37589 * 7 6 5 9 9 C 1.50694 * 109.68405 * 223.89253 * 7 6 5 10 10 H 1.08008 * 120.00168 * 359.48230 * 9 7 6 11 11 C 1.37879 * 120.00115 * 179.48407 * 9 7 6 12 12 N 1.31510 * 119.99787 * 0.02562 * 11 9 7 13 13 Si 1.86803 * 119.99848 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47316 * 359.97438 * 13 11 9 15 15 H 1.48505 * 109.46842 * 120.00331 * 13 11 9 16 16 H 1.48502 * 109.47092 * 240.00010 * 13 11 9 17 17 C 1.53404 * 108.41560 * 343.63703 * 7 6 5 18 18 C 1.53225 * 109.36457 * 49.56072 * 17 7 6 19 19 C 1.50933 * 127.80002 * 180.16973 * 5 4 3 20 20 H 1.09000 * 109.47319 * 269.95242 * 1 2 3 21 21 H 1.08997 * 109.47249 * 29.96126 * 1 2 3 22 22 H 1.09004 * 109.46667 * 149.95629 * 1 2 3 23 23 H 1.07999 * 125.75966 * 0.02562 * 3 2 1 24 24 H 1.00901 * 110.99869 * 180.52107 * 8 7 6 25 25 H 1.00896 * 110.99543 * 304.47230 * 8 7 6 26 26 H 0.97006 * 119.99456 * 180.02562 * 12 11 9 27 27 H 1.08995 * 109.47975 * 169.56756 * 17 7 6 28 28 H 1.09003 * 109.47657 * 289.59515 * 17 7 6 29 29 H 1.09000 * 109.44390 * 169.99915 * 18 17 7 30 30 H 1.08997 * 109.47411 * 50.03629 * 18 17 7 31 31 H 1.09001 * 109.67954 * 282.92217 * 19 5 4 32 32 H 1.09002 * 109.67403 * 43.42204 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3120 1.0809 0.0000 4 8 3.5899 0.6609 -0.0006 5 6 3.6185 -0.6771 0.0000 6 6 2.3472 -1.1279 -0.0008 7 6 1.9564 -2.5827 -0.0027 8 7 1.5188 -2.9793 1.3424 9 6 0.8374 -2.8064 -0.9869 10 1 0.4399 -1.9754 -1.5508 11 6 0.3209 -4.0720 -1.1676 12 7 0.8045 -5.0838 -0.4806 13 14 -1.0667 -4.3491 -2.3871 14 1 -1.4297 -3.0584 -3.0257 15 1 -0.6253 -5.3107 -3.4291 16 1 -2.2488 -4.8984 -1.6756 17 6 3.1795 -3.4125 -0.4136 18 6 4.3890 -2.9835 0.4235 19 6 4.8306 -1.5765 0.0032 20 1 -0.3634 -0.0009 1.0277 21 1 -0.3633 0.8903 -0.5132 22 1 -0.3633 -0.8896 -0.5145 23 1 1.9861 2.1106 0.0004 24 1 1.2600 -3.9542 1.3657 25 1 2.2309 -2.7777 2.0283 26 1 0.4413 -5.9742 -0.6081 27 1 2.9753 -4.4696 -0.2437 28 1 3.3917 -3.2484 -1.4701 29 1 5.2083 -3.6843 0.2630 30 1 4.1171 -2.9786 1.4790 31 1 5.2645 -1.6113 -0.9961 32 1 5.5679 -1.1962 0.7103 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084350271.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:25 Heat of formation + Delta-G solvation = 5.824627 kcal Electronic energy + Delta-G solvation = -15814.203029 eV Core-core repulsion = 13354.820833 eV Total energy + Delta-G solvation = -2459.382196 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.85486 -37.04613 -33.56385 -32.67446 -30.69733 -28.56724 -27.09458 -26.57089 -24.70567 -21.68151 -21.21317 -19.14072 -17.66053 -16.58704 -15.75183 -15.25416 -14.64009 -14.10258 -13.68578 -13.56576 -13.14180 -12.39823 -12.25388 -12.12997 -11.84853 -11.61942 -11.53727 -11.00556 -10.86910 -10.72393 -10.43675 -10.10519 -9.87386 -9.47029 -9.01477 -8.55508 -8.30462 -7.41324 -6.94403 -6.06078 -4.07441 2.53502 3.28128 3.36980 3.40561 3.58667 3.74590 4.41505 5.22276 5.37453 5.60066 5.63928 5.83819 5.93331 6.01940 6.25595 6.27997 6.41797 6.53232 6.55786 6.61548 6.74108 6.84205 6.92638 7.15184 7.27394 7.34036 7.52425 7.78173 7.97583 8.06147 8.29748 8.75769 9.09445 9.27978 9.58703 11.01610 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029524 B = 0.012684 C = 0.010046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.154295 B = 2207.021852 C = 2786.530325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.135 4.135 3 C -0.092 4.092 4 O -0.185 6.185 5 C -0.055 4.055 6 C -0.113 4.113 7 C 0.305 3.695 8 N -0.834 5.834 9 C -0.485 4.485 10 H 0.066 0.934 11 C 0.069 3.931 12 N -0.898 5.898 13 Si 0.893 3.107 14 H -0.273 1.273 15 H -0.286 1.286 16 H -0.284 1.284 17 C -0.140 4.140 18 C -0.120 4.120 19 C -0.024 4.024 20 H 0.058 0.942 21 H 0.041 0.959 22 H 0.097 0.903 23 H 0.189 0.811 24 H 0.358 0.642 25 H 0.293 0.707 26 H 0.261 0.739 27 H 0.089 0.911 28 H 0.046 0.954 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.147 5.494 1.288 7.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.136 4.136 3 C -0.159 4.159 4 O -0.083 6.083 5 C -0.105 4.105 6 C -0.115 4.115 7 C 0.214 3.786 8 N -0.366 5.366 9 C -0.524 4.524 10 H 0.084 0.916 11 C -0.132 4.132 12 N -0.539 5.539 13 Si 0.721 3.279 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.210 1.210 17 C -0.181 4.181 18 C -0.158 4.158 19 C -0.061 4.061 20 H 0.077 0.923 21 H 0.060 0.940 22 H 0.116 0.884 23 H 0.205 0.795 24 H 0.176 0.824 25 H 0.102 0.898 26 H 0.071 0.929 27 H 0.108 0.892 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.754 5.990 1.205 7.171 hybrid contribution -0.040 -0.767 -0.711 1.047 sum 3.714 5.223 0.495 6.427 Atomic orbital electron populations 1.20371 0.89757 1.02696 1.01682 1.20169 0.97187 0.92111 1.04168 1.23633 0.80539 0.98995 1.12728 1.83754 1.29285 1.22255 1.72987 1.22307 0.97571 0.80365 1.10258 1.20566 0.90449 0.98064 1.02409 1.16823 0.91126 0.82939 0.87738 1.59264 1.43447 1.28465 1.05408 1.21088 1.17271 0.93532 1.20521 0.91648 1.24931 0.96577 0.96010 0.95690 1.69659 1.42394 0.99960 1.41852 0.86518 0.82226 0.78166 0.80960 1.19792 1.21236 1.21023 1.22496 0.94019 1.03560 0.97975 1.21740 0.99713 0.93576 1.00772 1.20060 0.91843 0.92682 1.01559 0.92327 0.94015 0.88440 0.79456 0.82415 0.89751 0.92914 0.89224 0.93564 0.92369 0.92480 0.90895 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.75 10.11 36.01 0.36 -1.38 16 2 C -0.13 -2.86 5.93 -104.94 -0.62 -3.48 16 3 C -0.09 -1.73 12.02 29.50 0.35 -1.37 16 4 O -0.19 -3.70 10.65 6.38 0.07 -3.63 16 5 C -0.06 -1.15 7.22 -35.38 -0.26 -1.41 16 6 C -0.11 -2.58 4.95 -104.93 -0.52 -3.10 16 7 C 0.30 7.34 0.63 -133.72 -0.08 7.25 16 8 N -0.83 -19.75 8.86 -0.99 -0.01 -19.76 16 9 C -0.49 -12.79 6.84 -34.44 -0.24 -13.03 16 10 H 0.07 1.76 5.75 -52.48 -0.30 1.46 16 11 C 0.07 1.80 5.22 -17.82 -0.09 1.71 16 12 N -0.90 -23.73 9.74 55.43 0.54 -23.19 16 13 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 14 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 15 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 17 C -0.14 -3.19 4.47 -26.41 -0.12 -3.30 16 18 C -0.12 -2.22 5.87 -26.44 -0.16 -2.37 16 19 C -0.02 -0.43 6.30 -27.59 -0.17 -0.60 16 20 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 21 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.10 2.17 4.97 -51.93 -0.26 1.91 16 23 H 0.19 2.68 8.06 -52.49 -0.42 2.26 16 24 H 0.36 8.94 6.96 -39.29 -0.27 8.67 16 25 H 0.29 6.40 7.50 -39.29 -0.29 6.10 16 26 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 27 H 0.09 2.20 6.50 -51.93 -0.34 1.87 16 28 H 0.05 1.09 8.08 -51.93 -0.42 0.67 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.06 1.05 6.69 -51.93 -0.35 0.70 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 253.20 15.07 3.82 3.82 Total: -1.00 -27.68 253.20 -6.05 -33.73 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -3.90 Total: 14.34 kcal Atomic # 6 Polarization: -19.55 SS G_CDS: -1.54 Total: -21.08 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: 0.53 Total: -42.95 kcal Atomic # 8 Polarization: -3.70 SS G_CDS: 0.07 Total: -3.63 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -27.68 -6.05 -33.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084350271.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.556 kcal (2) G-P(sol) polarization free energy of solvation -27.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds