Wall clock time and date at job start Mon Mar 30 2020 02:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35099 * 119.65053 * 2 1 4 4 C 1.41475 * 119.24616 * 180.28408 * 3 2 1 5 5 O 1.22245 * 120.68449 * 179.74518 * 4 3 2 6 6 C 1.41486 * 118.63857 * 359.72461 * 4 3 2 7 7 C 1.35088 * 119.24757 * 0.02562 * 6 4 3 8 8 C 1.50700 * 119.65197 * 180.02562 * 7 6 4 9 9 N 1.35600 * 120.69735 * 359.97438 * 7 6 4 10 10 C 1.46503 * 119.26378 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.47286 * 0.87723 * 10 9 7 12 12 C 1.53010 * 109.47118 * 120.87972 * 10 9 7 13 13 C 1.50700 * 109.47027 * 240.87634 * 10 9 7 14 14 H 1.07995 * 120.00196 * 0.02562 * 13 10 9 15 15 C 1.37878 * 119.99917 * 180.02562 * 13 10 9 16 16 N 1.31514 * 119.99967 * 359.97438 * 15 13 10 17 17 Si 1.86800 * 120.00062 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47187 * 89.99466 * 17 15 13 19 19 H 1.48493 * 109.47319 * 209.99924 * 17 15 13 20 20 H 1.48507 * 109.46841 * 329.99773 * 17 15 13 21 21 H 1.08995 * 109.47375 * 275.59527 * 1 2 3 22 22 H 1.08999 * 109.47334 * 35.60313 * 1 2 3 23 23 H 1.09006 * 109.46920 * 155.60051 * 1 2 3 24 24 H 1.08003 * 120.37413 * 0.02562 * 3 2 1 25 25 H 1.08003 * 120.37759 * 180.02562 * 6 4 3 26 26 H 1.09006 * 109.46736 * 263.76981 * 8 7 6 27 27 H 1.09000 * 109.47188 * 23.76571 * 8 7 6 28 28 H 1.09000 * 109.47016 * 143.77094 * 8 7 6 29 29 H 1.09000 * 109.46655 * 180.02562 * 12 10 9 30 30 H 1.08998 * 109.46785 * 299.99568 * 12 10 9 31 31 H 1.08998 * 109.47245 * 59.99726 * 12 10 9 32 32 H 0.96998 * 120.00001 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1753 1.1741 0.0000 4 6 3.5900 1.1641 -0.0061 5 8 4.2213 2.2110 -0.0109 6 6 4.2594 -0.0824 -0.0061 7 6 3.5332 -1.2215 -0.0008 8 6 4.2368 -2.5542 -0.0001 9 7 2.1779 -1.1784 0.0050 10 6 1.4215 -2.4331 0.0112 11 1 2.1140 -3.2747 0.0259 12 6 0.5295 -2.4847 1.2533 13 6 0.5646 -2.5091 -1.2261 14 1 0.5820 -1.7038 -1.9453 15 6 -0.2416 -3.6070 -1.4398 16 7 -0.2624 -4.5881 -0.5642 17 14 -1.3033 -3.7017 -2.9739 18 1 -0.5401 -4.3605 -4.0642 19 1 -2.5276 -4.4892 -2.6807 20 1 -1.6861 -2.3304 -3.3963 21 1 -0.3634 0.1002 1.0227 22 1 -0.3634 0.8355 -0.5983 23 1 -0.3633 -0.9359 -0.4246 24 1 1.6357 2.1097 0.0004 25 1 5.3387 -0.1228 -0.0103 26 1 4.3041 -2.9299 -1.0212 27 1 5.2396 -2.4354 0.4102 28 1 3.6755 -3.2610 0.6109 29 1 -0.0329 -3.4184 1.2581 30 1 1.1493 -2.4297 2.1482 31 1 -0.1629 -1.6430 1.2386 32 1 -0.8293 -5.3606 -0.7148 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086895373.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:46 Heat of formation + Delta-G solvation = -20.672398 kcal Electronic energy + Delta-G solvation = -15467.690984 eV Core-core repulsion = 13007.159790 eV Total energy + Delta-G solvation = -2460.531194 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.23904 -39.04767 -36.07090 -35.03148 -33.37022 -30.68618 -29.62962 -27.82812 -27.42453 -23.76811 -23.09007 -21.69149 -19.08123 -18.38679 -17.43731 -16.58277 -16.31814 -16.19233 -15.30518 -14.93775 -14.50668 -14.27229 -14.15378 -14.00213 -13.74502 -13.55023 -13.28719 -13.11425 -12.80962 -12.60928 -12.54691 -12.31923 -11.98561 -11.68159 -11.07402 -10.52834 -10.27003 -10.05638 -8.83076 -8.24972 -6.38513 0.41309 0.54562 1.42919 1.49251 1.54988 1.90819 2.38712 2.90084 3.03820 3.53188 3.82450 4.10556 4.20165 4.39114 4.55462 4.58418 4.72530 4.75772 4.84800 4.86909 4.92776 4.96528 5.06827 5.21847 5.34501 5.52130 5.57077 5.63215 5.77093 5.92796 6.11690 6.41885 6.65005 7.26359 7.29314 8.77280 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034969 B = 0.009589 C = 0.008850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.526788 B = 2919.247911 C = 3163.127768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.207 3.793 3 C -0.342 4.342 4 C 0.370 3.630 5 O -0.621 6.621 6 C -0.331 4.331 7 C 0.183 3.817 8 C -0.121 4.121 9 N -0.445 5.445 10 C 0.231 3.769 11 H 0.070 0.930 12 C -0.165 4.165 13 C -0.544 4.544 14 H 0.060 0.940 15 C 0.042 3.958 16 N -0.897 5.897 17 Si 0.950 3.050 18 H -0.281 1.281 19 H -0.281 1.281 20 H -0.269 1.269 21 H 0.096 0.904 22 H 0.089 0.911 23 H 0.120 0.880 24 H 0.142 0.858 25 H 0.149 0.851 26 H 0.094 0.906 27 H 0.111 0.889 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.029 0.971 31 H 0.066 0.934 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.148 -1.280 1.477 1.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.095 3.905 3 C -0.366 4.366 4 C 0.272 3.728 5 O -0.518 6.518 6 C -0.355 4.355 7 C 0.071 3.929 8 C -0.177 4.177 9 N -0.128 5.128 10 C 0.132 3.868 11 H 0.087 0.913 12 C -0.223 4.223 13 C -0.582 4.582 14 H 0.079 0.921 15 C -0.162 4.162 16 N -0.534 5.534 17 Si 0.776 3.224 18 H -0.207 1.207 19 H -0.207 1.207 20 H -0.193 1.193 21 H 0.114 0.886 22 H 0.108 0.892 23 H 0.138 0.862 24 H 0.160 0.840 25 H 0.167 0.833 26 H 0.112 0.888 27 H 0.129 0.871 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.048 0.952 31 H 0.085 0.915 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.064 -1.187 1.526 1.935 hybrid contribution -0.468 -0.021 -0.785 0.914 sum -0.531 -1.209 0.741 1.514 Atomic orbital electron populations 1.21864 0.87002 1.07570 1.04414 1.20700 0.96321 0.84495 0.88980 1.22126 0.96197 0.97753 1.20485 1.17608 0.89863 0.89428 0.75902 1.90652 1.71182 1.36488 1.53478 1.22118 1.01567 0.92200 1.19618 1.20960 0.82784 0.98573 0.90580 1.21213 1.01274 0.90353 1.04890 1.44203 1.05134 1.08637 1.54818 1.19703 0.91527 0.79382 0.96201 0.91290 1.22416 1.00325 1.04780 0.94779 1.21269 1.25738 1.05472 1.05709 0.92141 1.25362 0.97366 0.94727 0.98709 1.69902 1.39433 1.08400 1.35673 0.85652 0.78403 0.78442 0.79857 1.20728 1.20677 1.19321 0.88574 0.89207 0.86225 0.84044 0.83340 0.88780 0.87068 0.89687 0.89595 0.95185 0.91504 0.91971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.89 7.72 71.24 0.55 -4.34 16 2 C 0.21 7.75 6.05 41.25 0.25 8.00 16 3 C -0.34 -13.74 9.63 22.34 0.22 -13.52 16 4 C 0.37 16.66 6.77 23.87 0.16 16.82 16 5 O -0.62 -32.29 17.90 -6.12 -0.11 -32.40 16 6 C -0.33 -12.71 9.59 22.34 0.21 -12.50 16 7 C 0.18 6.44 6.65 41.25 0.27 6.71 16 8 C -0.12 -3.23 9.08 71.24 0.65 -2.59 16 9 N -0.44 -16.79 2.55 -477.99 -1.22 -18.01 16 10 C 0.23 9.13 2.37 44.25 0.10 9.24 16 11 H 0.07 2.80 5.27 -2.39 -0.01 2.79 16 12 C -0.17 -6.22 8.78 71.99 0.63 -5.58 16 13 C -0.54 -23.74 6.00 25.60 0.15 -23.59 16 14 H 0.06 2.74 7.18 -2.91 -0.02 2.72 16 15 C 0.04 1.85 5.30 84.66 0.45 2.30 16 16 N -0.90 -41.43 11.32 21.45 0.24 -41.18 16 17 Si 0.95 36.72 29.54 68.60 2.03 38.74 16 18 H -0.28 -11.03 7.11 99.48 0.71 -10.33 16 19 H -0.28 -10.78 7.11 99.48 0.71 -10.07 16 20 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 21 H 0.10 2.69 7.19 -2.39 -0.02 2.67 16 22 H 0.09 2.52 8.11 -2.39 -0.02 2.50 16 23 H 0.12 4.36 3.70 -2.38 -0.01 4.35 16 24 H 0.14 5.29 8.06 -2.91 -0.02 5.26 16 25 H 0.15 5.12 8.03 -2.91 -0.02 5.10 16 26 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 27 H 0.11 2.31 8.00 -2.39 -0.02 2.29 16 28 H 0.08 2.30 6.31 -2.39 -0.02 2.29 16 29 H 0.09 3.60 6.07 -2.39 -0.01 3.58 16 30 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 2.35 4.30 -2.39 -0.01 2.34 16 32 H 0.27 12.06 8.31 -92.71 -0.77 11.29 16 Total: -1.00 -56.97 257.37 5.72 -51.25 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 1.13 Total: 20.64 kcal Atomic # 6 Polarization: -22.70 SS G_CDS: 3.65 Total: -19.05 kcal Atomic # 7 Polarization: -58.21 SS G_CDS: -0.98 Total: -59.19 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -0.11 Total: -32.40 kcal Atomic # 14 Polarization: 36.72 SS G_CDS: 2.03 Total: 38.74 kcal Total: -56.97 5.72 -51.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086895373.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.580 kcal (2) G-P(sol) polarization free energy of solvation -56.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds