Wall clock time and date at job start Mon Mar 30 2020 02:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35092 * 119.65292 * 2 1 4 4 C 1.41477 * 119.24752 * 180.02562 * 3 2 1 5 5 O 1.22244 * 120.68145 * 180.02562 * 4 3 2 6 6 C 1.41488 * 118.63799 * 0.02562 * 4 3 2 7 7 C 1.35089 * 119.24568 * 0.02562 * 6 4 3 8 8 C 1.50697 * 119.65096 * 180.02562 * 7 6 4 9 9 N 1.35597 * 119.64630 * 180.02562 * 2 1 3 10 10 C 1.46499 * 119.26740 * 0.25151 * 9 2 1 11 11 H 1.09000 * 109.47029 * 12.34144 * 10 9 2 12 12 C 1.53002 * 109.47276 * 252.33536 * 10 9 2 13 13 C 1.50706 * 109.47247 * 132.33705 * 10 9 2 14 14 H 1.08006 * 119.99482 * 0.02562 * 13 10 9 15 15 C 1.37880 * 120.00286 * 180.02562 * 13 10 9 16 16 N 1.31510 * 119.99431 * 359.97438 * 15 13 10 17 17 Si 1.86793 * 119.99925 * 180.02562 * 15 13 10 18 18 H 1.48498 * 109.47257 * 89.99889 * 17 15 13 19 19 H 1.48504 * 109.46704 * 209.99964 * 17 15 13 20 20 H 1.48506 * 109.47240 * 329.99391 * 17 15 13 21 21 H 1.09000 * 109.46848 * 263.19989 * 1 2 3 22 22 H 1.09004 * 109.47100 * 23.19208 * 1 2 3 23 23 H 1.08995 * 109.47571 * 143.19865 * 1 2 3 24 24 H 1.08003 * 120.37141 * 0.05029 * 3 2 1 25 25 H 1.08002 * 120.37604 * 180.02562 * 6 4 3 26 26 H 1.08992 * 109.47113 * 270.40246 * 8 7 6 27 27 H 1.09002 * 109.47332 * 30.40444 * 8 7 6 28 28 H 1.09003 * 109.47424 * 150.40446 * 8 7 6 29 29 H 1.08998 * 109.46858 * 56.79876 * 12 10 9 30 30 H 1.08999 * 109.46997 * 176.79750 * 12 10 9 31 31 H 1.08997 * 109.47085 * 296.79605 * 12 10 9 32 32 H 0.97002 * 119.99674 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1754 1.1740 0.0000 4 6 3.5901 1.1640 -0.0006 5 8 4.2213 2.2109 -0.0001 6 6 4.2594 -0.0826 -0.0016 7 6 3.5332 -1.2216 -0.0027 8 6 4.2366 -2.5543 -0.0032 9 7 2.1777 -1.1785 -0.0005 10 6 1.4213 -2.4331 -0.0067 11 1 0.3748 -2.2253 -0.2298 12 6 1.5276 -3.0995 1.3665 13 6 1.9855 -3.3546 -1.0573 14 1 2.8239 -3.0376 -1.6598 15 6 1.4313 -4.6025 -1.2493 16 7 0.4107 -4.9886 -0.5152 17 14 2.1310 -5.7449 -2.5509 18 1 3.1983 -6.5848 -1.9504 19 1 1.0504 -6.6180 -3.0757 20 1 2.7004 -4.9402 -3.6616 21 1 -0.3633 -0.1217 1.0204 22 1 -0.3633 0.9447 -0.4047 23 1 -0.3634 -0.8228 -0.6156 24 1 1.6358 2.1096 0.0008 25 1 5.3387 -0.1230 -0.0017 26 1 4.4130 -2.8716 -1.0309 27 1 5.1899 -2.4623 0.5173 28 1 3.6158 -3.2932 0.5036 29 1 1.1722 -2.4108 2.1330 30 1 0.9188 -4.0035 1.3797 31 1 2.5675 -3.3588 1.5650 32 1 0.0210 -5.8666 -0.6500 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086895375.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:50 Heat of formation + Delta-G solvation = -4.278562 kcal Electronic energy + Delta-G solvation = -15477.030920 eV Core-core repulsion = 13017.210616 eV Total energy + Delta-G solvation = -2459.820303 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.66332 -37.32655 -34.40671 -33.51069 -31.65433 -29.14321 -28.21646 -26.46214 -25.55423 -22.15581 -21.61010 -20.06621 -17.38498 -16.77323 -15.71736 -14.92773 -14.73340 -14.67123 -13.71324 -13.45586 -12.98056 -12.84028 -12.68110 -12.60200 -12.21092 -11.92211 -11.78498 -11.58384 -11.27694 -11.05906 -10.93532 -10.72743 -10.29966 -10.15993 -9.28932 -8.79666 -8.55708 -8.55098 -7.15038 -6.48127 -4.56664 1.94674 2.16145 3.05487 3.14626 3.16587 3.45694 4.08460 4.53441 4.84346 4.93503 5.29105 5.51689 5.71929 5.75084 5.80709 5.93317 6.08809 6.16301 6.30051 6.31530 6.39881 6.47522 6.55466 6.73626 6.79388 7.09648 7.21444 7.31966 7.44395 7.55724 7.74175 8.00548 8.43426 8.95601 9.09567 10.57206 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035566 B = 0.009766 C = 0.008672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.077262 B = 2866.448438 C = 3227.985802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.178 3.822 3 C -0.321 4.321 4 C 0.392 3.608 5 O -0.574 6.574 6 C -0.330 4.330 7 C 0.206 3.794 8 C -0.128 4.128 9 N -0.444 5.444 10 C 0.228 3.772 11 H 0.072 0.928 12 C -0.161 4.161 13 C -0.546 4.546 14 H 0.076 0.924 15 C 0.072 3.928 16 N -0.883 5.883 17 Si 0.902 3.098 18 H -0.275 1.275 19 H -0.283 1.283 20 H -0.271 1.271 21 H 0.081 0.919 22 H 0.081 0.919 23 H 0.089 0.911 24 H 0.133 0.867 25 H 0.133 0.867 26 H 0.088 0.912 27 H 0.060 0.940 28 H 0.112 0.888 29 H 0.019 0.981 30 H 0.102 0.898 31 H 0.049 0.951 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.821 0.247 1.525 1.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.066 3.934 3 C -0.345 4.345 4 C 0.290 3.710 5 O -0.466 6.466 6 C -0.355 4.355 7 C 0.094 3.906 8 C -0.184 4.184 9 N -0.128 5.128 10 C 0.129 3.871 11 H 0.089 0.911 12 C -0.219 4.219 13 C -0.583 4.583 14 H 0.094 0.906 15 C -0.132 4.132 16 N -0.519 5.519 17 Si 0.729 3.271 18 H -0.201 1.201 19 H -0.208 1.208 20 H -0.196 1.196 21 H 0.100 0.900 22 H 0.100 0.900 23 H 0.107 0.893 24 H 0.151 0.849 25 H 0.151 0.849 26 H 0.106 0.894 27 H 0.079 0.921 28 H 0.130 0.870 29 H 0.038 0.962 30 H 0.120 0.880 31 H 0.067 0.933 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.777 0.387 1.558 1.783 hybrid contribution 0.220 -0.709 -0.707 1.025 sum -0.557 -0.322 0.851 1.067 Atomic orbital electron populations 1.21133 0.89009 1.04356 1.03804 1.20435 0.94667 0.85761 0.92563 1.22072 0.97012 0.96555 1.18904 1.17097 0.88736 0.89102 0.76067 1.90684 1.70305 1.35102 1.50517 1.22093 1.00789 0.92868 1.19703 1.20421 0.82781 0.97349 0.90007 1.21613 0.99189 0.93294 1.04341 1.44065 1.05202 1.08042 1.55477 1.19789 0.93348 0.78073 0.95844 0.91074 1.22370 1.02007 1.02451 0.95029 1.21407 1.18200 0.99850 1.18885 0.90646 1.24838 0.94504 0.97734 0.96144 1.69839 1.22394 1.20775 1.38930 0.86405 0.78901 0.80411 0.81427 1.20109 1.20836 1.19559 0.89999 0.89976 0.89268 0.84910 0.84927 0.89408 0.92082 0.87024 0.96196 0.87954 0.93263 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.82 9.22 36.01 0.33 -1.49 16 2 C 0.18 3.25 6.65 -82.05 -0.55 2.71 16 3 C -0.32 -6.29 9.59 -39.47 -0.38 -6.67 16 4 C 0.39 8.80 6.77 -37.11 -0.25 8.55 16 5 O -0.57 -14.63 17.90 4.69 0.08 -14.55 16 6 C -0.33 -6.74 9.61 -39.46 -0.38 -7.12 16 7 C 0.21 4.01 6.08 -82.04 -0.50 3.51 16 8 C -0.13 -2.23 7.97 36.00 0.29 -1.94 16 9 N -0.44 -8.72 2.55 -102.44 -0.26 -8.98 16 10 C 0.23 4.70 2.35 -69.08 -0.16 4.53 16 11 H 0.07 1.51 5.27 -51.93 -0.27 1.23 16 12 C -0.16 -3.17 8.92 37.16 0.33 -2.84 16 13 C -0.55 -12.23 6.29 -34.44 -0.22 -12.44 16 14 H 0.08 1.71 5.26 -52.48 -0.28 1.43 16 15 C 0.07 1.66 5.30 -17.82 -0.09 1.57 16 16 N -0.88 -21.02 11.35 55.43 0.63 -20.39 16 17 Si 0.90 18.44 29.54 -169.99 -5.02 13.42 16 18 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 19 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 21 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 22 H 0.08 1.00 8.00 -51.93 -0.42 0.58 16 23 H 0.09 1.36 6.13 -51.93 -0.32 1.04 16 24 H 0.13 2.36 8.03 -52.48 -0.42 1.94 16 25 H 0.13 2.52 8.06 -52.49 -0.42 2.09 16 26 H 0.09 1.53 6.62 -51.93 -0.34 1.19 16 27 H 0.06 0.90 8.07 -51.93 -0.42 0.48 16 28 H 0.11 2.06 3.50 -51.93 -0.18 1.88 16 29 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.10 2.21 6.16 -51.93 -0.32 1.89 16 31 H 0.05 0.94 5.38 -51.93 -0.28 0.66 16 32 H 0.27 6.19 8.31 -40.82 -0.34 5.85 16 LS Contribution 256.48 15.07 3.87 3.87 Total: -1.00 -27.34 256.48 -5.93 -33.27 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -3.65 Total: 4.99 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -1.58 Total: -11.63 kcal Atomic # 7 Polarization: -29.74 SS G_CDS: 0.37 Total: -29.37 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: 0.08 Total: -14.55 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.02 Total: 13.42 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -27.34 -5.93 -33.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086895375.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.990 kcal (2) G-P(sol) polarization free energy of solvation -27.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds