Wall clock time and date at job start Mon Mar 30 2020 04:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35894 * 117.00322 * 2 1 4 4 C 1.38758 * 120.05544 * 0.02850 * 3 2 1 5 5 C 1.38125 * 119.94310 * 179.97438 * 4 3 2 6 6 C 1.38278 * 120.05758 * 359.97438 * 5 4 3 7 7 C 1.38243 * 120.11263 * 359.74878 * 6 5 4 8 8 C 1.38167 * 120.05613 * 0.51040 * 7 6 5 9 9 C 1.50694 * 120.02996 * 179.77143 * 8 7 6 10 10 H 1.08998 * 109.47127 * 215.41482 * 9 8 7 11 11 C 1.52997 * 109.47453 * 95.41563 * 9 8 7 12 12 N 1.46501 * 109.47270 * 335.41086 * 9 8 7 13 13 C 1.36930 * 120.00477 * 276.99468 * 12 9 8 14 14 H 1.08002 * 119.99718 * 359.97438 * 13 12 9 15 15 C 1.38810 * 120.00162 * 179.97438 * 13 12 9 16 16 N 1.31619 * 120.00053 * 359.72891 * 15 13 12 17 17 Si 1.86800 * 119.99906 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47418 * 179.72787 * 17 15 13 19 19 H 1.48500 * 109.47220 * 299.72794 * 17 15 13 20 20 H 1.48504 * 109.47087 * 59.72746 * 17 15 13 21 21 H 1.08994 * 109.47247 * 180.02562 * 1 2 3 22 22 H 1.09006 * 109.46489 * 299.99905 * 1 2 3 23 23 H 1.08994 * 109.47201 * 59.99640 * 1 2 3 24 24 H 1.08003 * 120.02715 * 359.95290 * 4 3 2 25 25 H 1.08005 * 119.96913 * 179.97438 * 5 4 3 26 26 H 1.07999 * 119.94416 * 179.97438 * 6 5 4 27 27 H 1.08002 * 119.97567 * 180.24792 * 7 6 5 28 28 H 1.08994 * 109.47416 * 59.99735 * 11 9 8 29 29 H 1.09005 * 109.47434 * 179.97438 * 11 9 8 30 30 H 1.09010 * 109.47078 * 299.99772 * 11 9 8 31 31 H 0.97005 * 119.99623 * 96.99184 * 12 9 8 32 32 H 0.96993 * 119.99968 * 0.26919 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 0.0006 5 6 1.9210 3.6047 0.0011 6 6 3.3020 3.6757 0.0016 7 6 4.0560 2.5170 0.0068 8 6 3.4312 1.2847 0.0009 9 6 4.2537 0.0221 0.0013 10 1 3.7530 -0.7380 -0.5984 11 6 4.4117 -0.4833 1.4368 12 7 5.5752 0.2999 -0.5668 13 6 5.7498 0.3032 -1.9250 14 1 4.9133 0.1005 -2.5774 15 6 7.0018 0.5669 -2.4632 16 7 8.0200 0.8191 -1.6683 17 14 7.2400 0.5706 -4.3159 18 1 8.6567 0.8837 -4.6323 19 1 6.8946 -0.7664 -4.8621 20 1 6.3579 1.5976 -4.9264 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3632 0.5139 0.8901 23 1 -0.3633 0.5139 -0.8899 24 1 0.2129 2.3204 0.0003 25 1 1.3341 4.5114 0.0012 26 1 3.7923 4.6379 0.0016 27 1 5.1345 2.5750 0.0112 28 1 3.4285 -0.6900 1.8594 29 1 5.0063 -1.3969 1.4370 30 1 4.9125 0.2768 2.0365 31 1 6.3266 0.4816 0.0192 32 1 7.8964 0.8168 -0.7063 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088162757.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:28 Heat of formation + Delta-G solvation = -2.144240 kcal Electronic energy + Delta-G solvation = -15063.754022 eV Core-core repulsion = 12604.026269 eV Total energy + Delta-G solvation = -2459.727752 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.84948 -37.16451 -35.43765 -32.45745 -29.70874 -29.55401 -28.03963 -26.99485 -23.49882 -22.88694 -21.54085 -19.95101 -17.64712 -17.29708 -15.84743 -15.55001 -15.35823 -14.42380 -13.96579 -13.84884 -13.54742 -13.32014 -12.93233 -12.51236 -11.89517 -11.55746 -11.51461 -11.13736 -10.85326 -10.79691 -10.74209 -10.36998 -10.19358 -9.92178 -9.14491 -8.91886 -8.28489 -7.67661 -7.01888 -6.04977 -3.05339 1.86263 1.91704 3.55564 3.58987 3.59813 3.76182 4.27382 4.71837 5.07107 5.19331 5.23037 5.28429 5.50848 5.53804 5.63623 5.67927 5.84027 5.90717 6.03026 6.10840 6.30517 6.36697 6.54582 6.64471 6.73003 6.83706 6.98098 7.23136 7.37930 7.80057 7.90060 8.80709 9.26796 10.13073 10.28548 11.43252 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.028902 B = 0.008610 C = 0.008221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.568935 B = 3251.285950 C = 3405.039004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.313 6.313 3 C 0.117 3.883 4 C -0.218 4.218 5 C -0.100 4.100 6 C -0.162 4.162 7 C -0.050 4.050 8 C -0.108 4.108 9 C 0.217 3.783 10 H 0.062 0.938 11 C -0.146 4.146 12 N -0.731 5.731 13 C -0.324 4.324 14 H 0.063 0.937 15 C -0.045 4.045 16 N -0.946 5.946 17 Si 1.077 2.923 18 H -0.285 1.285 19 H -0.296 1.296 20 H -0.296 1.296 21 H 0.094 0.906 22 H 0.049 0.951 23 H 0.050 0.950 24 H 0.118 0.882 25 H 0.114 0.886 26 H 0.115 0.885 27 H 0.134 0.866 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.367 0.633 32 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.975 1.765 5.208 15.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.227 6.227 3 C 0.072 3.928 4 C -0.237 4.237 5 C -0.118 4.118 6 C -0.181 4.181 7 C -0.068 4.068 8 C -0.112 4.112 9 C 0.106 3.894 10 H 0.080 0.920 11 C -0.204 4.204 12 N -0.372 5.372 13 C -0.455 4.455 14 H 0.081 0.919 15 C -0.242 4.242 16 N -0.591 5.591 17 Si 0.908 3.092 18 H -0.211 1.211 19 H -0.223 1.223 20 H -0.223 1.223 21 H 0.112 0.888 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.136 0.864 25 H 0.132 0.868 26 H 0.133 0.867 27 H 0.151 0.849 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.201 0.799 32 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.924 1.720 3.814 13.584 hybrid contribution -1.366 0.161 1.262 1.867 sum -14.290 1.881 5.077 15.281 Atomic orbital electron populations 1.22950 0.79569 1.03262 1.00800 1.86093 1.20301 1.27255 1.89018 1.18940 0.91991 0.83732 0.98182 1.21049 0.99120 0.92652 1.10837 1.20746 0.94654 0.96413 1.00029 1.21059 0.93779 0.98441 1.04789 1.20972 1.00811 0.90536 0.94508 1.20657 0.90163 0.98792 1.01590 1.18989 0.86364 0.91021 0.92982 0.92014 1.21950 1.00976 1.00774 0.96679 1.42494 1.04768 1.85419 1.04554 1.20025 0.97061 1.45346 0.83063 0.91892 1.25706 0.91548 1.00173 1.06776 1.70888 1.31578 1.52566 1.04118 0.83276 0.75754 0.75857 0.74269 1.21076 1.22316 1.22340 0.88753 0.93212 0.93134 0.86427 0.86799 0.86656 0.84869 0.92720 0.92492 0.93248 0.79938 0.93451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 9.81 101.05 0.99 1.33 16 2 O -0.31 -5.22 9.65 -19.41 -0.19 -5.40 16 3 C 0.12 2.12 6.66 -39.21 -0.26 1.86 16 4 C -0.22 -3.43 9.04 -39.43 -0.36 -3.79 16 5 C -0.10 -1.56 10.04 -39.61 -0.40 -1.95 16 6 C -0.16 -2.81 10.04 -39.56 -0.40 -3.21 16 7 C -0.05 -1.01 9.32 -39.61 -0.37 -1.38 16 8 C -0.11 -2.21 5.01 -104.48 -0.52 -2.74 16 9 C 0.22 4.70 2.82 -69.09 -0.19 4.50 16 10 H 0.06 1.43 7.67 -51.93 -0.40 1.03 16 11 C -0.15 -2.65 9.35 37.16 0.35 -2.30 16 12 N -0.73 -18.57 3.86 -54.56 -0.21 -18.78 16 13 C -0.32 -9.24 9.90 -15.06 -0.15 -9.39 16 14 H 0.06 1.82 7.83 -52.49 -0.41 1.41 16 15 C -0.04 -1.31 5.50 -17.43 -0.10 -1.41 16 16 N -0.95 -29.28 13.70 55.49 0.76 -28.52 16 17 Si 1.08 26.50 29.92 -169.99 -5.09 21.42 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.30 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.30 -7.02 7.11 56.52 0.40 -6.62 16 21 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 22 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 23 H 0.05 0.53 7.66 -51.93 -0.40 0.14 16 24 H 0.12 1.50 6.30 -52.48 -0.33 1.17 16 25 H 0.11 1.41 8.06 -52.48 -0.42 0.99 16 26 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 27 H 0.13 2.95 7.25 -52.49 -0.38 2.57 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 31 H 0.37 9.49 6.61 -40.82 -0.27 9.22 16 32 H 0.25 7.72 6.77 -40.82 -0.28 7.44 16 LS Contribution 272.39 15.07 4.10 4.10 Total: -1.00 -32.01 272.39 -6.22 -38.22 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -4.19 Total: 7.45 kcal Atomic # 6 Polarization: -17.09 SS G_CDS: -1.41 Total: -18.49 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: 0.55 Total: -47.30 kcal Atomic # 8 Polarization: -5.22 SS G_CDS: -0.19 Total: -5.40 kcal Atomic # 14 Polarization: 26.50 SS G_CDS: -5.09 Total: 21.42 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -32.01 -6.22 -38.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088162757.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.080 kcal (2) G-P(sol) polarization free energy of solvation -32.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds