Wall clock time and date at job start Mon Mar 30 2020 02:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50695 * 109.47078 * 2 1 4 4 C 1.38286 * 119.94608 * 270.01992 * 3 2 1 5 5 C 1.38128 * 120.05727 * 179.97438 * 4 3 2 6 6 C 1.38751 * 119.94393 * 359.77553 * 5 4 3 7 7 O 1.35898 * 120.05647 * 180.27312 * 6 5 4 8 8 C 1.38709 * 119.88860 * 0.47496 * 6 5 4 9 9 C 1.50703 * 120.02948 * 179.79316 * 8 6 5 10 10 H 1.08998 * 109.47145 * 39.72782 * 9 8 6 11 11 N 1.46900 * 109.47047 * 159.73006 * 9 8 6 12 12 C 1.50700 * 109.47148 * 279.72761 * 9 8 6 13 13 H 1.08002 * 119.99770 * 0.02562 * 12 9 8 14 14 C 1.37871 * 120.00083 * 179.97438 * 12 9 8 15 15 N 1.31514 * 120.00147 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 120.00278 * 180.02562 * 14 12 9 17 17 H 1.48494 * 109.47228 * 179.97438 * 16 14 12 18 18 H 1.48501 * 109.46793 * 300.00001 * 16 14 12 19 19 H 1.48500 * 109.47000 * 60.00094 * 16 14 12 20 20 C 1.38171 * 119.94450 * 359.52440 * 8 6 5 21 21 H 1.08998 * 109.47190 * 299.99712 * 1 2 3 22 22 H 1.08995 * 109.47314 * 60.00077 * 1 2 3 23 23 H 1.09007 * 109.46957 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47125 * 239.99735 * 2 1 3 25 25 H 1.09009 * 109.47403 * 119.99922 * 2 1 3 26 26 H 1.07998 * 119.97015 * 359.97438 * 4 3 2 27 27 H 1.08002 * 120.02720 * 180.02562 * 5 4 3 28 28 H 0.96702 * 114.00225 * 270.20866 * 7 6 5 29 29 H 1.00907 * 110.99867 * 296.04432 * 11 9 8 30 30 H 1.00896 * 111.00376 * 59.99771 * 11 9 8 31 31 H 0.97005 * 119.99661 * 359.97438 * 15 14 12 32 32 H 1.07998 * 119.97433 * 180.24966 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2620 2.0717 -1.1982 5 6 2.7219 3.3742 -1.2009 6 6 2.9490 4.0310 0.0000 7 8 3.3962 5.3143 0.0000 8 6 2.7228 3.3741 1.2006 9 6 2.9728 4.0829 2.5068 10 1 2.6376 5.1171 2.4290 11 7 2.2317 3.4073 3.5802 12 6 4.4468 4.0548 2.8195 13 1 5.1338 3.5724 2.1400 14 6 4.9183 4.6459 3.9724 15 7 4.0818 5.2338 4.7995 16 14 6.7455 4.6118 4.3596 17 1 6.9919 5.3111 5.6461 18 1 7.2026 3.2029 4.4659 19 1 7.4943 5.2946 3.2742 20 6 2.2627 2.0713 1.1979 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8934 -0.5139 0.8900 26 1 2.0816 1.5613 -2.1327 27 1 2.9007 3.8823 -2.1370 28 1 4.3598 5.3950 -0.0019 29 1 1.2363 3.4688 3.4265 30 1 2.5245 2.4462 3.6724 31 1 3.1330 5.2519 4.5982 32 1 2.0826 1.5607 2.1324 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095770277.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:38 Heat of formation + Delta-G solvation = -56.544535 kcal Electronic energy + Delta-G solvation = -15010.483330 eV Core-core repulsion = 12548.396604 eV Total energy + Delta-G solvation = -2462.086726 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.96055 -37.92644 -36.94796 -34.23005 -33.48794 -30.85347 -29.58728 -27.63523 -24.77182 -24.52968 -22.46924 -21.29697 -19.30789 -18.75429 -17.11027 -16.89249 -16.28903 -15.96803 -15.57904 -15.17059 -14.84212 -14.70309 -14.08583 -13.89371 -13.79869 -13.40928 -12.87181 -12.63328 -12.47018 -12.39818 -11.94096 -11.82124 -11.73033 -11.28519 -10.88623 -10.49945 -9.70096 -9.37598 -9.21043 -8.38811 -6.26059 0.33996 0.47545 1.54933 1.62643 1.81522 2.60557 2.73631 3.30580 3.50779 3.86952 3.92801 4.05794 4.15655 4.31462 4.47483 4.52889 4.63853 4.67554 5.00867 5.01869 5.05100 5.08961 5.21124 5.36412 5.44168 5.61452 5.70318 5.90498 6.00613 6.22076 6.64632 6.74147 6.89093 6.99059 7.66594 8.96255 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.032306 B = 0.008582 C = 0.007802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.492537 B = 3261.796694 C = 3587.903735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.079 4.079 3 C -0.090 4.090 4 C -0.118 4.118 5 C -0.144 4.144 6 C 0.075 3.925 7 O -0.510 6.510 8 C -0.122 4.122 9 C 0.248 3.752 10 H 0.003 0.997 11 N -0.836 5.836 12 C -0.609 4.609 13 H 0.036 0.964 14 C -0.011 4.011 15 N -0.920 5.920 16 Si 1.111 2.889 17 H -0.287 1.287 18 H -0.276 1.276 19 H -0.271 1.271 20 C -0.126 4.126 21 H 0.041 0.959 22 H 0.057 0.943 23 H 0.076 0.924 24 H 0.091 0.909 25 H 0.070 0.930 26 H 0.155 0.845 27 H 0.143 0.857 28 H 0.396 0.604 29 H 0.316 0.684 30 H 0.331 0.669 31 H 0.276 0.724 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.596 -9.727 -11.960 15.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 C -0.090 4.090 4 C -0.136 4.136 5 C -0.163 4.163 6 C 0.030 3.970 7 O -0.321 6.321 8 C -0.124 4.124 9 C 0.139 3.861 10 H 0.020 0.980 11 N -0.365 5.365 12 C -0.648 4.648 13 H 0.055 0.945 14 C -0.215 4.215 15 N -0.555 5.555 16 Si 0.934 3.066 17 H -0.213 1.213 18 H -0.202 1.202 19 H -0.197 1.197 20 C -0.144 4.144 21 H 0.061 0.939 22 H 0.076 0.924 23 H 0.095 0.905 24 H 0.109 0.891 25 H 0.088 0.912 26 H 0.173 0.827 27 H 0.161 0.839 28 H 0.253 0.747 29 H 0.127 0.873 30 H 0.145 0.855 31 H 0.088 0.912 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.764 -8.560 -10.344 13.708 hybrid contribution -1.024 -0.694 -1.508 1.950 sum -3.788 -9.254 -11.852 15.507 Atomic orbital electron populations 1.21724 0.93959 1.02582 1.01699 1.20560 0.96706 0.90696 1.03660 1.20192 0.98862 0.97621 0.92304 1.21122 1.00190 0.93831 0.98476 1.21600 1.01985 0.95582 0.97105 1.18633 1.01287 0.84638 0.92445 1.84653 1.28058 1.22946 1.96455 1.21623 0.97748 0.95601 0.97456 1.17835 0.93969 0.91234 0.83101 0.97965 1.59199 1.06877 1.20542 1.49925 1.21849 0.91253 1.41840 1.09821 0.94540 1.27015 1.09458 0.92210 0.92791 1.70666 1.06379 1.40469 1.37965 0.83027 0.70339 0.76973 0.76262 1.21311 1.20207 1.19673 1.20845 1.01407 0.93541 0.98618 0.93949 0.92374 0.90477 0.89081 0.91180 0.82715 0.83879 0.74670 0.87280 0.85542 0.91223 0.86523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.89 71.98 0.71 -2.01 16 2 C -0.08 -1.71 6.06 29.85 0.18 -1.53 16 3 C -0.09 -2.66 5.13 -19.85 -0.10 -2.76 16 4 C -0.12 -3.28 9.69 22.25 0.22 -3.06 16 5 C -0.14 -4.64 9.99 22.37 0.22 -4.41 16 6 C 0.07 3.04 6.67 22.51 0.15 3.19 16 7 O -0.51 -21.20 12.73 -92.41 -1.18 -22.38 16 8 C -0.12 -5.35 5.03 -19.77 -0.10 -5.45 16 9 C 0.25 12.87 2.13 43.42 0.09 12.97 16 10 H 0.00 0.15 7.71 -2.39 -0.02 0.14 16 11 N -0.84 -40.05 7.27 -174.95 -1.27 -41.32 16 12 C -0.61 -34.29 8.71 25.60 0.22 -34.07 16 13 H 0.04 2.05 7.74 -2.91 -0.02 2.03 16 14 C -0.01 -0.65 5.39 84.65 0.46 -0.19 16 15 N -0.92 -57.26 13.51 21.45 0.29 -56.97 16 16 Si 1.11 50.73 29.90 68.60 2.05 52.78 16 17 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 18 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 19 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 20 C -0.13 -4.67 8.90 22.26 0.20 -4.47 16 21 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 22 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 24 H 0.09 1.57 8.08 -2.39 -0.02 1.55 16 25 H 0.07 1.52 8.08 -2.38 -0.02 1.50 16 26 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 27 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 28 H 0.40 14.18 9.06 -74.06 -0.67 13.51 16 29 H 0.32 13.52 9.06 -89.69 -0.81 12.71 16 30 H 0.33 15.03 7.28 -89.70 -0.65 14.38 16 31 H 0.28 17.57 6.39 -92.70 -0.59 16.98 16 32 H 0.12 4.21 6.25 -2.91 -0.02 4.19 16 Total: -1.00 -68.62 272.53 1.33 -67.28 By element: Atomic # 1 Polarization: 43.20 SS G_CDS: -0.81 Total: 42.39 kcal Atomic # 6 Polarization: -44.04 SS G_CDS: 2.25 Total: -41.79 kcal Atomic # 7 Polarization: -97.31 SS G_CDS: -0.98 Total: -98.29 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -1.18 Total: -22.38 kcal Atomic # 14 Polarization: 50.73 SS G_CDS: 2.05 Total: 52.78 kcal Total: -68.62 1.33 -67.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095770277.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.740 kcal (2) G-P(sol) polarization free energy of solvation -68.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds