Wall clock time and date at job start Mon Mar 30 2020 02:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50694 * 109.46959 * 2 1 4 4 C 1.38290 * 119.97245 * 269.97600 * 3 2 1 5 5 C 1.38252 * 120.11161 * 179.72720 * 4 3 2 6 6 C 1.38166 * 120.05044 * 0.55393 * 5 4 3 7 7 C 1.50701 * 120.02426 * 179.74564 * 6 5 4 8 8 H 1.09002 * 109.47060 * 144.72797 * 7 6 5 9 9 N 1.46901 * 109.46921 * 24.72616 * 7 6 5 10 10 C 1.50699 * 109.47269 * 264.72651 * 7 6 5 11 11 H 1.08000 * 119.99792 * 0.02562 * 10 7 6 12 12 C 1.37878 * 119.99902 * 179.97438 * 10 7 6 13 13 N 1.31515 * 120.00126 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 119.99745 * 180.02562 * 12 10 7 15 15 H 1.48496 * 109.47319 * 60.00570 * 14 12 10 16 16 H 1.48503 * 109.46734 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47266 * 300.00384 * 14 12 10 18 18 C 1.38706 * 119.94572 * 359.47659 * 6 5 4 19 19 O 1.35903 * 120.05629 * 180.23072 * 18 6 5 20 20 C 1.38122 * 119.97239 * 90.00906 * 3 2 1 21 21 H 1.08993 * 109.47358 * 59.99394 * 1 2 3 22 22 H 1.09000 * 109.47009 * 180.02562 * 1 2 3 23 23 H 1.09010 * 109.46329 * 299.99344 * 1 2 3 24 24 H 1.09009 * 109.46319 * 240.00099 * 2 1 3 25 25 H 1.08993 * 109.47358 * 120.00606 * 2 1 3 26 26 H 1.08003 * 119.94534 * 0.03048 * 4 3 2 27 27 H 1.07997 * 119.97117 * 180.27970 * 5 4 3 28 28 H 1.00901 * 110.99547 * 176.04411 * 9 7 6 29 29 H 1.00898 * 111.00245 * 299.99784 * 9 7 6 30 30 H 0.96999 * 120.00073 * 179.97438 * 13 12 10 31 31 H 0.96697 * 114.00311 * 89.98895 * 19 18 6 32 32 H 1.08004 * 120.02846 * 0.02562 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2631 2.0720 -1.1980 5 6 2.7185 3.3773 -1.2013 6 6 2.9551 4.0306 -0.0071 7 6 3.4570 5.4516 -0.0115 8 1 3.0230 5.9928 0.8292 9 7 3.0671 6.1047 -1.2682 10 6 4.9590 5.4542 0.1111 11 1 5.4965 4.5203 0.1844 12 6 5.6472 6.6489 0.1286 13 7 4.9927 7.7861 0.0388 14 14 7.5090 6.6521 0.2798 15 1 8.1000 5.9146 -0.8656 16 1 8.0035 8.0524 0.2756 17 1 7.9037 5.9920 1.5502 18 6 2.7250 3.3794 1.1958 19 8 2.9526 4.0215 2.3718 20 6 2.2625 2.0713 1.1965 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3632 0.5138 0.8902 24 1 1.8933 -0.5139 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 2.0825 1.5616 -2.1325 27 1 2.8936 3.8852 -2.1382 28 1 3.3358 7.0773 -1.2688 29 1 3.4574 5.6213 -2.0632 30 1 5.4768 8.6266 0.0515 31 1 2.1857 4.5021 2.7123 32 1 2.0830 1.5620 2.1319 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095783169.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:50 Heat of formation + Delta-G solvation = -35.249497 kcal Electronic energy + Delta-G solvation = -14867.019972 eV Core-core repulsion = 12405.856668 eV Total energy + Delta-G solvation = -2461.163304 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.32625 -36.33139 -35.07256 -32.96883 -31.13708 -29.30888 -28.32071 -25.91919 -23.84504 -21.99782 -21.44520 -19.65942 -17.28236 -16.48192 -15.70422 -15.34674 -14.73148 -14.31820 -13.86991 -13.65937 -13.30510 -12.90717 -12.71880 -12.26405 -11.91485 -11.51002 -11.32439 -11.13777 -10.95055 -10.82673 -10.74933 -10.54127 -10.03331 -9.93517 -9.34759 -8.62269 -8.10450 -7.71296 -7.18689 -6.04773 -4.19014 1.94476 2.04840 3.27958 3.31950 3.36628 4.26583 4.42811 4.88258 5.09579 5.17718 5.22068 5.49047 5.57204 5.67211 5.80016 5.87615 5.94011 6.05345 6.26757 6.30488 6.54808 6.66642 6.69087 7.03975 7.12130 7.20335 7.53689 7.74653 7.79488 8.12379 8.41970 8.70047 8.94851 9.10824 9.50719 10.93609 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.042386 B = 0.007426 C = 0.007229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.443854 B = 3769.765372 C = 3872.170327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.078 4.078 3 C -0.100 4.100 4 C -0.132 4.132 5 C -0.097 4.097 6 C -0.055 4.055 7 C 0.246 3.754 8 H 0.049 0.951 9 N -0.852 5.852 10 C -0.531 4.531 11 H 0.053 0.947 12 C 0.065 3.935 13 N -0.897 5.897 14 Si 0.898 3.102 15 H -0.277 1.277 16 H -0.286 1.286 17 H -0.276 1.276 18 C 0.100 3.900 19 O -0.487 6.487 20 C -0.149 4.149 21 H 0.055 0.945 22 H 0.051 0.949 23 H 0.054 0.946 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.112 0.888 27 H 0.124 0.876 28 H 0.356 0.644 29 H 0.311 0.689 30 H 0.265 0.735 31 H 0.378 0.622 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.951 -10.272 -0.426 12.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.100 4.100 4 C -0.150 4.150 5 C -0.116 4.116 6 C -0.056 4.056 7 C 0.136 3.864 8 H 0.067 0.933 9 N -0.382 5.382 10 C -0.571 4.571 11 H 0.071 0.929 12 C -0.137 4.137 13 N -0.537 5.537 14 Si 0.725 3.275 15 H -0.203 1.203 16 H -0.212 1.212 17 H -0.201 1.201 18 C 0.055 3.945 19 O -0.296 6.296 20 C -0.167 4.167 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.073 0.927 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.130 0.870 27 H 0.142 0.858 28 H 0.172 0.828 29 H 0.120 0.880 30 H 0.075 0.925 31 H 0.232 0.768 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.114 -10.463 -0.255 12.655 hybrid contribution 1.738 0.457 0.132 1.802 sum -5.375 -10.006 -0.124 11.359 Atomic orbital electron populations 1.21746 0.95277 1.00989 1.02204 1.20432 0.95736 0.93215 1.02118 1.19470 1.01791 0.95859 0.92863 1.20921 1.02018 0.95257 0.96796 1.20878 0.98817 0.93586 0.98280 1.20848 0.94385 0.98730 0.91607 1.17818 0.92702 0.85220 0.90639 0.93321 1.59598 1.65401 1.09065 1.04174 1.21682 0.92080 0.92629 1.50660 0.92871 1.24990 0.98762 0.95387 0.94541 1.69726 1.35710 0.97392 1.50881 0.86564 0.85204 0.76878 0.78825 1.20302 1.21210 1.20147 1.18306 0.99644 0.91084 0.85457 1.84891 1.39729 1.69022 1.35910 1.21095 1.02826 0.95214 0.97595 0.92583 0.92977 0.92714 0.91529 0.91658 0.87021 0.85802 0.82789 0.87959 0.92512 0.76789 0.86693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.89 37.16 0.37 -1.20 16 2 C -0.08 -0.96 6.06 -27.88 -0.17 -1.13 16 3 C -0.10 -1.60 5.13 -104.65 -0.54 -2.14 16 4 C -0.13 -2.23 9.70 -39.56 -0.38 -2.61 16 5 C -0.10 -1.92 9.27 -39.60 -0.37 -2.29 16 6 C -0.05 -1.22 5.01 -104.47 -0.52 -1.74 16 7 C 0.25 6.24 2.67 -70.02 -0.19 6.05 16 8 H 0.05 1.35 7.69 -51.93 -0.40 0.95 16 9 N -0.85 -20.37 8.78 -6.65 -0.06 -20.43 16 10 C -0.53 -14.79 8.71 -34.44 -0.30 -15.09 16 11 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 12 C 0.06 1.79 5.38 -17.82 -0.10 1.70 16 13 N -0.90 -25.09 11.54 55.43 0.64 -24.45 16 14 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 C 0.10 2.06 6.68 -39.22 -0.26 1.80 16 19 O -0.49 -9.86 12.64 -19.44 -0.25 -10.11 16 20 C -0.15 -2.62 9.64 -39.43 -0.38 -3.00 16 21 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 22 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 24 H 0.07 0.75 8.09 -51.92 -0.42 0.33 16 25 H 0.06 0.75 8.08 -51.93 -0.42 0.34 16 26 H 0.11 1.58 8.06 -52.48 -0.42 1.16 16 27 H 0.12 2.37 6.29 -52.49 -0.33 2.04 16 28 H 0.36 9.11 7.08 -39.29 -0.28 8.84 16 29 H 0.31 7.04 7.21 -39.29 -0.28 6.76 16 30 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.38 5.82 9.06 45.56 0.41 6.23 16 32 H 0.12 1.78 8.06 -52.48 -0.42 1.36 16 LS Contribution 272.04 15.07 4.10 4.10 Total: -1.00 -29.73 272.04 -6.80 -36.53 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -3.37 Total: 17.40 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: -2.84 Total: -19.65 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: 0.58 Total: -44.89 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: -0.25 Total: -10.11 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -29.73 -6.80 -36.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095783169.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.277 kcal (2) G-P(sol) polarization free energy of solvation -29.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds