Wall clock time and date at job start Mon Mar 30 2020 02:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50694 * 109.46959 * 2 1 4 4 C 1.38290 * 119.97245 * 269.97600 * 3 2 1 5 5 C 1.38252 * 120.11161 * 179.72720 * 4 3 2 6 6 C 1.38166 * 120.05044 * 0.55393 * 5 4 3 7 7 C 1.50701 * 120.02426 * 179.74564 * 6 5 4 8 8 H 1.09002 * 109.47060 * 144.72797 * 7 6 5 9 9 N 1.46901 * 109.46921 * 24.72616 * 7 6 5 10 10 C 1.50699 * 109.47269 * 264.72651 * 7 6 5 11 11 H 1.08000 * 119.99792 * 0.02562 * 10 7 6 12 12 C 1.37878 * 119.99902 * 179.97438 * 10 7 6 13 13 N 1.31515 * 120.00126 * 0.02562 * 12 10 7 14 14 Si 1.86803 * 119.99745 * 180.02562 * 12 10 7 15 15 H 1.48496 * 109.47319 * 60.00570 * 14 12 10 16 16 H 1.48503 * 109.46734 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47266 * 300.00384 * 14 12 10 18 18 C 1.38706 * 119.94572 * 359.47659 * 6 5 4 19 19 O 1.35903 * 120.05629 * 180.23072 * 18 6 5 20 20 C 1.38122 * 119.97239 * 90.00906 * 3 2 1 21 21 H 1.08993 * 109.47358 * 59.99394 * 1 2 3 22 22 H 1.09000 * 109.47009 * 180.02562 * 1 2 3 23 23 H 1.09010 * 109.46329 * 299.99344 * 1 2 3 24 24 H 1.09009 * 109.46319 * 240.00099 * 2 1 3 25 25 H 1.08993 * 109.47358 * 120.00606 * 2 1 3 26 26 H 1.08003 * 119.94534 * 0.03048 * 4 3 2 27 27 H 1.07997 * 119.97117 * 180.27970 * 5 4 3 28 28 H 1.00901 * 110.99547 * 176.04411 * 9 7 6 29 29 H 1.00898 * 111.00245 * 299.99784 * 9 7 6 30 30 H 0.96999 * 120.00073 * 179.97438 * 13 12 10 31 31 H 0.96697 * 114.00311 * 89.98895 * 19 18 6 32 32 H 1.08004 * 120.02846 * 0.02562 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2631 2.0720 -1.1980 5 6 2.7185 3.3773 -1.2013 6 6 2.9551 4.0306 -0.0071 7 6 3.4570 5.4516 -0.0115 8 1 3.0230 5.9928 0.8292 9 7 3.0671 6.1047 -1.2682 10 6 4.9590 5.4542 0.1111 11 1 5.4965 4.5203 0.1844 12 6 5.6472 6.6489 0.1286 13 7 4.9927 7.7861 0.0388 14 14 7.5090 6.6521 0.2798 15 1 8.1000 5.9146 -0.8656 16 1 8.0035 8.0524 0.2756 17 1 7.9037 5.9920 1.5502 18 6 2.7250 3.3794 1.1958 19 8 2.9526 4.0215 2.3718 20 6 2.2625 2.0713 1.1965 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3632 0.5138 0.8902 24 1 1.8933 -0.5139 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 2.0825 1.5616 -2.1325 27 1 2.8936 3.8852 -2.1382 28 1 3.3358 7.0773 -1.2688 29 1 3.4574 5.6213 -2.0632 30 1 5.4768 8.6266 0.0515 31 1 2.1857 4.5021 2.7123 32 1 2.0830 1.5620 2.1319 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095783169.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:49 Heat of formation + Delta-G solvation = -56.304809 kcal Electronic energy + Delta-G solvation = -14867.932999 eV Core-core repulsion = 12405.856668 eV Total energy + Delta-G solvation = -2462.076331 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.80447 -37.76289 -36.87759 -34.47319 -32.93602 -30.75497 -29.80709 -27.87222 -25.28886 -23.42577 -22.92199 -21.21884 -18.80069 -18.56009 -17.33668 -16.84697 -16.41505 -15.95641 -15.39232 -14.95085 -14.65771 -14.52390 -14.08211 -13.80142 -13.47535 -13.29940 -12.86485 -12.75146 -12.56083 -12.35542 -12.15605 -11.89413 -11.76698 -11.65511 -10.97773 -10.71609 -9.55093 -9.35425 -9.08159 -8.12362 -6.36970 0.49760 0.59639 1.34740 1.36274 1.44573 2.35168 2.88718 3.03862 3.49635 3.97856 4.09329 4.20297 4.40553 4.42648 4.60417 4.71538 4.79056 4.83417 5.05988 5.14353 5.16611 5.24253 5.39830 5.47341 5.57912 5.66530 5.77112 5.93848 6.05943 6.15729 6.62834 6.89826 6.99655 7.08901 7.37441 8.81443 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.042386 B = 0.007426 C = 0.007229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.443854 B = 3769.765372 C = 3872.170327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.076 4.076 3 C -0.087 4.087 4 C -0.129 4.129 5 C -0.108 4.108 6 C -0.094 4.094 7 C 0.253 3.747 8 H 0.012 0.988 9 N -0.841 5.841 10 C -0.549 4.549 11 H 0.035 0.965 12 C 0.022 3.978 13 N -0.916 5.916 14 Si 0.956 3.044 15 H -0.271 1.271 16 H -0.276 1.276 17 H -0.280 1.280 18 C 0.082 3.918 19 O -0.507 6.507 20 C -0.150 4.150 21 H 0.052 0.948 22 H 0.075 0.925 23 H 0.048 0.952 24 H 0.084 0.916 25 H 0.077 0.923 26 H 0.145 0.855 27 H 0.123 0.877 28 H 0.345 0.655 29 H 0.318 0.682 30 H 0.268 0.732 31 H 0.394 0.606 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.213 -12.462 -0.880 14.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 C -0.087 4.087 4 C -0.146 4.146 5 C -0.126 4.126 6 C -0.096 4.096 7 C 0.143 3.857 8 H 0.030 0.970 9 N -0.370 5.370 10 C -0.589 4.589 11 H 0.053 0.947 12 C -0.178 4.178 13 N -0.556 5.556 14 Si 0.782 3.218 15 H -0.197 1.197 16 H -0.201 1.201 17 H -0.205 1.205 18 C 0.037 3.963 19 O -0.318 6.318 20 C -0.168 4.168 21 H 0.071 0.929 22 H 0.094 0.906 23 H 0.067 0.933 24 H 0.102 0.898 25 H 0.095 0.905 26 H 0.163 0.837 27 H 0.141 0.859 28 H 0.159 0.841 29 H 0.128 0.872 30 H 0.077 0.923 31 H 0.250 0.750 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.394 -12.659 -0.714 14.678 hybrid contribution 1.750 1.074 0.286 2.073 sum -5.644 -11.585 -0.428 12.894 Atomic orbital electron populations 1.21730 0.93944 1.02481 1.01841 1.20537 0.96720 0.90440 1.03650 1.19986 0.99279 0.97578 0.91850 1.21258 1.00635 0.94035 0.98711 1.20975 0.99326 0.95027 0.97266 1.20715 0.97670 0.97612 0.93554 1.17543 0.91359 0.87142 0.89672 0.96972 1.59553 1.65048 1.08265 1.04145 1.21872 0.93690 0.92067 1.51240 0.94671 1.25692 1.02822 0.95066 0.94177 1.69818 1.37091 0.97709 1.50946 0.85645 0.80370 0.77241 0.78547 1.19664 1.20141 1.20536 1.18576 1.00497 0.92358 0.84883 1.84818 1.41373 1.69534 1.36034 1.21340 1.02128 0.93945 0.99398 0.92851 0.90612 0.93259 0.89773 0.90460 0.83693 0.85940 0.84069 0.87181 0.92297 0.74979 0.84481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.89 71.98 0.71 -1.81 16 2 C -0.08 -1.56 6.06 29.85 0.18 -1.38 16 3 C -0.09 -2.55 5.13 -19.88 -0.10 -2.65 16 4 C -0.13 -4.04 9.70 22.29 0.22 -3.82 16 5 C -0.11 -4.21 9.27 22.26 0.21 -4.01 16 6 C -0.09 -4.30 5.01 -19.77 -0.10 -4.40 16 7 C 0.25 13.32 2.67 43.42 0.12 13.44 16 8 H 0.01 0.72 7.69 -2.39 -0.02 0.71 16 9 N -0.84 -41.40 8.78 -174.95 -1.54 -42.94 16 10 C -0.55 -31.46 8.71 25.60 0.22 -31.24 16 11 H 0.03 2.09 7.74 -2.91 -0.02 2.07 16 12 C 0.02 1.25 5.38 84.65 0.46 1.70 16 13 N -0.92 -52.09 11.54 21.45 0.25 -51.84 16 14 Si 0.96 44.73 29.54 68.60 2.03 46.76 16 15 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 16 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 17 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 18 C 0.08 3.39 6.68 22.50 0.15 3.54 16 19 O -0.51 -21.07 12.64 -92.46 -1.17 -22.24 16 20 C -0.15 -5.02 9.64 22.37 0.22 -4.81 16 21 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 22 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 24 H 0.08 1.48 8.09 -2.38 -0.02 1.46 16 25 H 0.08 1.44 8.08 -2.39 -0.02 1.43 16 26 H 0.15 3.55 8.06 -2.91 -0.02 3.52 16 27 H 0.12 4.68 6.29 -2.91 -0.02 4.66 16 28 H 0.34 18.20 7.08 -89.69 -0.63 17.57 16 29 H 0.32 14.72 7.21 -89.70 -0.65 14.07 16 30 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 31 H 0.39 12.66 9.06 -74.06 -0.67 11.99 16 32 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -64.60 272.04 1.04 -63.56 By element: Atomic # 1 Polarization: 42.94 SS G_CDS: -0.81 Total: 42.13 kcal Atomic # 6 Polarization: -37.70 SS G_CDS: 2.27 Total: -35.43 kcal Atomic # 7 Polarization: -93.49 SS G_CDS: -1.29 Total: -94.78 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -1.17 Total: -22.24 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -64.60 1.04 -63.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095783169.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.254 kcal (2) G-P(sol) polarization free energy of solvation -64.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds