Wall clock time and date at job start Mon Mar 30 2020 04:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.46896 * 2 1 4 4 N 1.46906 * 109.47310 * 119.99713 * 2 1 3 5 5 C 1.50693 * 109.47375 * 239.99775 * 2 1 3 6 6 C 1.38168 * 120.03195 * 264.97620 * 5 2 1 7 7 C 1.38237 * 120.05838 * 179.97438 * 6 5 2 8 8 C 1.50706 * 119.94647 * 179.97438 * 7 6 5 9 9 C 1.50697 * 109.46720 * 90.00208 * 8 7 6 10 10 H 1.07997 * 120.00836 * 0.02562 * 9 8 7 11 11 C 1.37879 * 119.99604 * 180.02562 * 9 8 7 12 12 N 1.31512 * 120.00325 * 359.97438 * 11 9 8 13 13 Si 1.86809 * 119.99913 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46727 * 59.99760 * 13 11 9 15 15 H 1.48499 * 109.46863 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47018 * 300.00100 * 13 11 9 17 17 C 1.38290 * 120.11494 * 359.76939 * 7 6 5 18 18 C 1.38125 * 120.05209 * 0.51379 * 17 7 6 19 19 C 1.38710 * 120.03041 * 84.99841 * 5 2 1 20 20 O 1.35905 * 120.05218 * 359.97438 * 19 5 2 21 21 H 1.09003 * 109.46896 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47008 * 300.00205 * 1 2 3 23 23 H 1.08992 * 109.47092 * 60.00188 * 1 2 3 24 24 H 1.00896 * 110.99609 * 296.04750 * 4 2 1 25 25 H 1.00900 * 110.99962 * 60.00035 * 4 2 1 26 26 H 1.08006 * 119.96904 * 0.02562 * 6 5 2 27 27 H 1.08996 * 109.47215 * 210.00429 * 8 7 6 28 28 H 1.09001 * 109.46603 * 330.00438 * 8 7 6 29 29 H 0.97004 * 119.99966 * 179.97438 * 12 11 9 30 30 H 1.08004 * 119.97799 * 180.25141 * 17 7 6 31 31 H 1.08002 * 120.03152 * 179.74558 * 18 17 7 32 32 H 0.96695 * 113.99923 * 269.97824 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0324 -0.7104 -1.2304 6 6 2.3617 -2.0509 -1.1689 7 6 2.8221 -2.7032 -2.2973 8 6 3.1811 -4.1652 -2.2273 9 6 1.9662 -4.9967 -2.5494 10 1 1.0281 -4.5148 -2.7821 11 6 2.0523 -6.3728 -2.5472 12 7 3.1947 -6.9597 -2.2644 13 14 0.5466 -7.4035 -2.9472 14 1 0.0719 -7.0759 -4.3156 15 1 0.9003 -8.8441 -2.8780 16 1 -0.5291 -7.1097 -1.9665 17 6 2.9498 -2.0177 -3.4915 18 6 2.6275 -0.6761 -3.5568 19 6 2.1651 -0.0191 -2.4256 20 8 1.8418 1.2994 -2.4887 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8899 24 1 1.7503 -0.1989 2.0372 25 1 1.6962 -1.6479 1.2229 26 1 2.2585 -2.5897 -0.2385 27 1 3.9702 -4.3805 -2.9476 28 1 3.5302 -4.4058 -1.2231 29 1 3.2552 -7.9279 -2.2624 30 1 3.3059 -2.5305 -4.3728 31 1 2.7313 -0.1400 -4.4887 32 1 0.9188 1.4673 -2.7230 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104456263.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:17:05 Heat of formation + Delta-G solvation = -57.133239 kcal Electronic energy + Delta-G solvation = -14727.015715 eV Core-core repulsion = 12264.903460 eV Total energy + Delta-G solvation = -2462.112254 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.95579 -37.83229 -36.95427 -35.10665 -32.31758 -31.22909 -29.58663 -28.31794 -25.09672 -24.60096 -22.49041 -20.99187 -19.25208 -18.49913 -17.39620 -16.94434 -16.46028 -16.05822 -15.49949 -14.88656 -14.83593 -14.38520 -14.36471 -14.00139 -13.55917 -13.44959 -13.08518 -12.78378 -12.57442 -12.54402 -12.35547 -12.13660 -11.50308 -11.39766 -11.16977 -10.60434 -9.78907 -9.55671 -9.14039 -8.19477 -6.33680 0.45872 0.52778 1.39406 1.41999 1.50385 2.38811 2.83886 3.10625 3.40384 3.64206 3.81217 4.07250 4.25324 4.31613 4.38993 4.60197 4.67080 4.79836 4.97007 5.05506 5.10670 5.21248 5.34655 5.39337 5.51630 5.62162 5.74178 6.00003 6.05092 6.19353 6.24885 6.62630 6.78704 6.93909 7.34824 8.89319 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.031094 B = 0.007498 C = 0.006916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.285124 B = 3733.644313 C = 4047.566038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.137 3.863 3 H 0.095 0.905 4 N -0.853 5.853 5 C -0.103 4.103 6 C -0.104 4.104 7 C -0.071 4.071 8 C 0.058 3.942 9 C -0.528 4.528 10 H 0.055 0.945 11 C 0.004 3.996 12 N -0.930 5.930 13 Si 0.965 3.035 14 H -0.268 1.268 15 H -0.281 1.281 16 H -0.267 1.267 17 C -0.125 4.125 18 C -0.140 4.140 19 C 0.085 3.915 20 O -0.497 6.497 21 H 0.044 0.956 22 H 0.077 0.923 23 H 0.069 0.931 24 H 0.354 0.646 25 H 0.342 0.658 26 H 0.116 0.884 27 H 0.002 0.998 28 H 0.002 0.998 29 H 0.266 0.734 30 H 0.118 0.882 31 H 0.146 0.854 32 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.959 14.368 2.323 16.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.026 3.974 3 H 0.113 0.887 4 N -0.385 5.385 5 C -0.104 4.104 6 C -0.122 4.122 7 C -0.071 4.071 8 C 0.021 3.979 9 C -0.565 4.565 10 H 0.074 0.926 11 C -0.194 4.194 12 N -0.570 5.570 13 Si 0.789 3.211 14 H -0.193 1.193 15 H -0.206 1.206 16 H -0.191 1.191 17 C -0.143 4.143 18 C -0.159 4.159 19 C 0.040 3.960 20 O -0.308 6.308 21 H 0.063 0.937 22 H 0.096 0.904 23 H 0.088 0.912 24 H 0.168 0.832 25 H 0.156 0.844 26 H 0.134 0.866 27 H 0.020 0.980 28 H 0.020 0.980 29 H 0.074 0.926 30 H 0.136 0.864 31 H 0.164 0.836 32 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -5.563 14.436 2.217 15.629 hybrid contribution -1.736 -1.261 -0.145 2.150 sum -7.299 13.175 2.073 15.204 Atomic orbital electron populations 1.22510 0.95300 1.01984 1.03466 1.20125 0.93094 0.97266 0.86931 0.88667 1.58875 1.68058 1.06966 1.04598 1.20247 1.01042 0.93303 0.95776 1.20695 0.99883 0.93850 0.97815 1.20433 0.96424 0.96368 0.93905 1.18075 0.95922 0.88088 0.95782 1.21326 0.96300 0.91438 1.47483 0.92644 1.25941 0.99245 0.99294 0.94918 1.70080 1.26856 1.10347 1.49736 0.85500 0.79132 0.77257 0.79175 1.19271 1.20617 1.19148 1.20993 1.01540 0.94311 0.97429 1.21476 1.01591 0.93848 0.98959 1.18081 1.02078 0.83700 0.92124 1.84743 1.34496 1.19248 1.92358 0.93656 0.90381 0.91205 0.83164 0.84425 0.86572 0.97972 0.97952 0.92555 0.86356 0.83603 0.74032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.52 9.46 71.98 0.68 -2.84 16 2 C 0.14 3.48 3.32 44.17 0.15 3.63 16 3 H 0.10 2.35 7.69 -2.39 -0.02 2.33 16 4 N -0.85 -21.38 8.83 -171.79 -1.52 -22.89 16 5 C -0.10 -3.37 5.07 -19.77 -0.10 -3.47 16 6 C -0.10 -4.15 8.92 22.25 0.20 -3.95 16 7 C -0.07 -3.22 5.07 -19.85 -0.10 -3.32 16 8 C 0.06 3.18 5.10 29.10 0.15 3.32 16 9 C -0.53 -30.17 9.09 25.60 0.23 -29.94 16 10 H 0.06 3.10 7.74 -2.91 -0.02 3.07 16 11 C 0.00 0.24 5.46 84.66 0.46 0.70 16 12 N -0.93 -56.35 13.29 21.45 0.28 -56.07 16 13 Si 0.97 44.03 29.54 68.60 2.03 46.05 16 14 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 15 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 16 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 17 C -0.12 -4.96 9.69 22.26 0.22 -4.74 16 18 C -0.14 -4.60 9.99 22.37 0.22 -4.37 16 19 C 0.08 2.62 6.68 22.51 0.15 2.77 16 20 O -0.50 -11.91 12.64 -92.48 -1.17 -13.08 16 21 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 22 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.35 6.69 9.07 -89.70 -0.81 5.88 16 25 H 0.34 8.96 7.21 -89.69 -0.65 8.32 16 26 H 0.12 4.65 6.29 -2.91 -0.02 4.63 16 27 H 0.00 0.11 8.09 -2.39 -0.02 0.10 16 28 H 0.00 0.13 8.08 -2.39 -0.02 0.11 16 29 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 30 H 0.12 4.64 8.06 -2.91 -0.02 4.61 16 31 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 32 H 0.40 5.68 9.06 -74.06 -0.67 5.01 16 Total: -1.00 -67.15 275.54 0.90 -66.25 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: -0.98 Total: 21.94 kcal Atomic # 6 Polarization: -44.46 SS G_CDS: 2.26 Total: -42.20 kcal Atomic # 7 Polarization: -77.73 SS G_CDS: -1.23 Total: -78.96 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: -1.17 Total: -13.08 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -67.15 0.90 -66.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104456263.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.117 kcal (2) G-P(sol) polarization free energy of solvation -67.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds