Wall clock time and date at job start Mon Mar 30 2020 02:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50702 * 109.46861 * 2 1 4 4 C 1.38755 * 120.02630 * 90.00396 * 3 2 1 5 5 O 1.35905 * 120.05599 * 0.02562 * 4 3 2 6 6 C 1.38706 * 119.88849 * 179.97438 * 4 3 2 7 7 C 1.38162 * 119.94729 * 359.97438 * 6 4 3 8 8 C 1.38247 * 120.05352 * 359.97438 * 7 6 4 9 9 C 1.38123 * 120.03154 * 270.26933 * 3 2 1 10 10 C 1.50696 * 119.97059 * 0.02562 * 9 3 2 11 11 H 1.09001 * 109.47188 * 325.26931 * 10 9 3 12 12 N 1.46905 * 109.47070 * 205.27033 * 10 9 3 13 13 C 1.50707 * 109.47392 * 85.27137 * 10 9 3 14 14 H 1.07997 * 119.99751 * 0.02562 * 13 10 9 15 15 C 1.37872 * 119.99795 * 179.97438 * 13 10 9 16 16 N 1.31510 * 120.00531 * 0.02562 * 15 13 10 17 17 Si 1.86808 * 119.99674 * 179.97438 * 15 13 10 18 18 H 1.48504 * 109.46840 * 90.00331 * 17 15 13 19 19 H 1.48495 * 109.47133 * 210.00541 * 17 15 13 20 20 H 1.48495 * 109.46904 * 330.00462 * 17 15 13 21 21 H 1.08997 * 109.47671 * 299.99816 * 1 2 3 22 22 H 1.09005 * 109.47423 * 60.00113 * 1 2 3 23 23 H 1.09000 * 109.46895 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46931 * 240.00553 * 2 1 3 25 25 H 1.08991 * 109.47096 * 120.00275 * 2 1 3 26 26 H 0.96704 * 113.99927 * 269.98167 * 5 4 3 27 27 H 1.08008 * 120.02457 * 179.97438 * 6 4 3 28 28 H 1.07998 * 119.97579 * 180.02562 * 7 6 4 29 29 H 1.08002 * 119.94131 * 179.97438 * 8 7 6 30 30 H 1.00898 * 110.99875 * 176.04197 * 12 10 9 31 31 H 1.00896 * 110.99722 * 299.99995 * 12 10 9 32 32 H 0.97001 * 120.00416 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2637 2.0755 1.2013 5 8 2.0384 1.4362 2.3793 6 6 2.7265 3.3830 1.1980 7 6 2.9564 4.0303 -0.0008 8 6 2.7260 3.3755 -1.1964 9 6 2.2574 2.0745 -1.1958 10 6 1.9999 1.3664 -2.5009 11 1 2.2477 0.3101 -2.3962 12 7 2.8326 1.9626 -3.5540 13 6 0.5456 1.5070 -2.8704 14 1 -0.1250 2.0548 -2.2250 15 6 0.0716 0.9373 -4.0330 16 7 0.8883 0.2707 -4.8192 17 14 -1.7311 1.1110 -4.4907 18 1 -1.9183 2.3364 -5.3085 19 1 -2.1599 -0.0763 -5.2728 20 1 -2.5481 1.2111 -3.2548 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5138 0.8899 26 1 1.1402 1.5455 2.7206 27 1 2.9071 3.8948 2.1318 28 1 3.3171 5.0482 -0.0039 29 1 2.9059 3.8833 -2.1325 30 1 2.7265 1.4638 -4.4247 31 1 2.6217 2.9424 -3.6705 32 1 0.5548 -0.1305 -5.6370 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104485462.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:54 Heat of formation + Delta-G solvation = -52.075493 kcal Electronic energy + Delta-G solvation = -15324.377010 eV Core-core repulsion = 12862.484076 eV Total energy + Delta-G solvation = -2461.892934 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.91283 -38.02658 -36.12735 -34.74024 -33.30617 -30.25225 -29.74108 -28.00185 -24.84898 -24.56822 -22.13058 -21.18661 -18.75769 -18.46362 -17.47455 -16.87191 -16.56336 -15.73301 -15.57764 -14.90873 -14.69067 -14.51040 -13.89066 -13.70649 -13.37150 -13.12946 -12.94086 -12.65180 -12.63777 -12.41908 -12.07735 -11.88271 -11.81497 -11.53268 -10.90123 -10.61994 -9.43683 -9.28063 -9.12359 -8.08479 -6.30935 0.51226 0.63396 1.36526 1.40017 1.48349 2.37299 2.91867 3.08840 3.46214 4.01832 4.12743 4.30542 4.33415 4.54311 4.67917 4.74782 4.76322 4.87387 5.02056 5.11499 5.27120 5.36885 5.45423 5.59455 5.63191 5.66198 5.75821 5.98799 6.15283 6.18154 6.68891 6.94504 6.97435 7.13356 7.42304 8.86222 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.030877 B = 0.010244 C = 0.008896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.616217 B = 2732.781341 C = 3146.625024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.069 4.069 3 C -0.126 4.126 4 C 0.096 3.904 5 O -0.502 6.502 6 C -0.164 4.164 7 C -0.110 4.110 8 C -0.134 4.134 9 C -0.044 4.044 10 C 0.245 3.755 11 H 0.018 0.982 12 N -0.847 5.847 13 C -0.534 4.534 14 H 0.048 0.952 15 C 0.024 3.976 16 N -0.917 5.917 17 Si 0.949 3.051 18 H -0.277 1.277 19 H -0.285 1.285 20 H -0.270 1.270 21 H 0.059 0.941 22 H 0.053 0.947 23 H 0.057 0.943 24 H 0.048 0.952 25 H 0.074 0.926 26 H 0.401 0.599 27 H 0.147 0.853 28 H 0.150 0.850 29 H 0.122 0.878 30 H 0.345 0.655 31 H 0.318 0.682 32 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.460 4.612 9.808 10.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 C -0.127 4.127 4 C 0.052 3.948 5 O -0.314 6.314 6 C -0.182 4.182 7 C -0.128 4.128 8 C -0.152 4.152 9 C -0.045 4.045 10 C 0.135 3.865 11 H 0.036 0.964 12 N -0.376 5.376 13 C -0.573 4.573 14 H 0.066 0.934 15 C -0.176 4.176 16 N -0.557 5.557 17 Si 0.776 3.224 18 H -0.203 1.203 19 H -0.211 1.211 20 H -0.195 1.195 21 H 0.078 0.922 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.067 0.933 25 H 0.092 0.908 26 H 0.259 0.741 27 H 0.165 0.835 28 H 0.167 0.833 29 H 0.139 0.861 30 H 0.160 0.840 31 H 0.129 0.871 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.751 4.115 10.057 10.892 hybrid contribution -2.283 0.064 -1.156 2.560 sum -1.532 4.179 8.901 9.952 Atomic orbital electron populations 1.21728 0.94363 1.01655 1.02199 1.20245 0.96793 0.92391 1.01227 1.20165 1.02320 0.97746 0.92420 1.18299 1.00966 0.91165 0.84412 1.84708 1.37107 1.74334 1.35210 1.21477 1.03647 0.93682 0.99425 1.21238 0.99633 1.00637 0.91244 1.21117 1.00689 0.94580 0.98860 1.20147 0.94604 0.94755 0.94981 1.17820 0.90161 0.92498 0.86038 0.96421 1.59539 1.58991 1.06199 1.12894 1.21800 0.95487 1.33913 1.06121 0.93370 1.25643 1.01220 0.94303 0.96429 1.69836 1.36359 1.35866 1.13614 0.85688 0.81049 0.77474 0.78232 1.20325 1.21074 1.19483 0.92154 0.92750 0.92391 0.93335 0.90784 0.74096 0.83499 0.83262 0.86052 0.84029 0.87132 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.10 9.89 71.98 0.71 -4.38 16 2 C -0.07 -2.66 5.43 29.85 0.16 -2.50 16 3 C -0.13 -4.98 5.15 -19.77 -0.10 -5.08 16 4 C 0.10 3.23 6.68 22.51 0.15 3.38 16 5 O -0.50 -14.16 12.55 -92.48 -1.16 -15.32 16 6 C -0.16 -4.92 9.99 22.36 0.22 -4.70 16 7 C -0.11 -3.40 10.04 22.25 0.22 -3.18 16 8 C -0.13 -5.13 9.27 22.28 0.21 -4.92 16 9 C -0.04 -1.93 4.99 -19.88 -0.10 -2.03 16 10 C 0.24 12.19 2.45 43.42 0.11 12.30 16 11 H 0.02 1.01 6.15 -2.39 -0.01 1.00 16 12 N -0.85 -40.70 8.78 -174.94 -1.54 -42.23 16 13 C -0.53 -27.76 6.93 25.60 0.18 -27.58 16 14 H 0.05 2.55 7.14 -2.91 -0.02 2.53 16 15 C 0.02 1.26 5.38 84.65 0.46 1.71 16 16 N -0.92 -50.08 11.54 21.44 0.25 -49.84 16 17 Si 0.95 42.08 29.54 68.60 2.03 44.11 16 18 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 20 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 21 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 22 H 0.05 2.31 5.49 -2.38 -0.01 2.30 16 23 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.05 2.13 6.03 -2.38 -0.01 2.12 16 25 H 0.07 2.55 7.53 -2.39 -0.02 2.54 16 26 H 0.40 7.57 9.06 -74.05 -0.67 6.90 16 27 H 0.15 3.45 8.06 -2.91 -0.02 3.42 16 28 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 29 H 0.12 4.53 6.28 -2.91 -0.02 4.51 16 30 H 0.35 17.81 7.08 -89.70 -0.63 17.17 16 31 H 0.32 14.32 7.20 -89.70 -0.65 13.67 16 32 H 0.27 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -59.07 262.60 1.01 -58.06 By element: Atomic # 1 Polarization: 42.98 SS G_CDS: -0.79 Total: 42.20 kcal Atomic # 6 Polarization: -39.19 SS G_CDS: 2.22 Total: -36.98 kcal Atomic # 7 Polarization: -90.78 SS G_CDS: -1.29 Total: -92.07 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -1.16 Total: -15.32 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -59.07 1.01 -58.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104485462.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.986 kcal (2) G-P(sol) polarization free energy of solvation -59.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds