Wall clock time and date at job start Mon Mar 30 2020 03:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46900 * 109.46794 * 2 1 4 4 C 1.52994 * 109.46963 * 120.00467 * 2 1 3 5 5 O 1.42904 * 109.47074 * 294.46135 * 4 2 1 6 6 C 1.50699 * 109.46958 * 240.00304 * 2 1 3 7 7 C 1.37636 * 120.12631 * 111.48468 * 6 2 1 8 8 C 1.38618 * 120.25096 * 179.97438 * 7 6 2 9 9 C 1.38657 * 120.49725 * 359.97438 * 8 7 6 10 10 C 1.37596 * 120.24868 * 0.02562 * 9 8 7 11 11 C 1.40699 * 120.12917 * 291.73784 * 6 2 1 12 12 C 1.41390 * 120.24278 * 0.02562 * 11 6 2 13 13 H 1.07998 * 120.00475 * 42.55408 * 12 11 6 14 14 C 1.39953 * 119.99901 * 222.55522 * 12 11 6 15 15 N 1.30814 * 119.99893 * 7.58133 * 14 12 11 16 16 Si 1.86797 * 119.99723 * 187.58149 * 14 12 11 17 17 H 1.48495 * 109.47301 * 59.99913 * 16 14 12 18 18 H 1.48501 * 109.46875 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47329 * 299.99640 * 16 14 12 20 20 H 1.09002 * 109.47161 * 172.11397 * 1 2 3 21 21 H 1.08997 * 109.47193 * 292.11647 * 1 2 3 22 22 H 1.09004 * 109.47439 * 52.11174 * 1 2 3 23 23 H 1.00905 * 111.00032 * 179.97438 * 3 2 1 24 24 H 1.00896 * 111.00753 * 303.95229 * 3 2 1 25 25 H 1.09001 * 109.47560 * 54.46552 * 4 2 1 26 26 H 1.09002 * 109.46860 * 174.46710 * 4 2 1 27 27 H 0.96700 * 114.00295 * 179.97438 * 5 4 2 28 28 H 1.08007 * 119.87870 * 359.97424 * 7 6 2 29 29 H 1.07994 * 119.75450 * 180.02562 * 8 7 6 30 30 H 1.08001 * 119.87661 * 180.02562 * 9 8 7 31 31 H 1.08003 * 120.12769 * 179.97438 * 10 9 8 32 32 H 0.97004 * 120.00107 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 2.0399 -0.7213 1.2491 5 8 1.6727 0.0231 2.4124 6 6 2.0323 -0.7103 -1.2305 7 6 2.6736 -0.0040 -2.2225 8 6 3.1372 -0.6548 -3.3552 9 6 2.9615 -2.0223 -3.5025 10 6 2.3232 -2.7486 -2.5235 11 6 1.8428 -2.0973 -1.3721 12 6 1.1802 -2.8323 -0.3623 13 1 0.2925 -2.4307 0.1037 14 6 1.6747 -4.0803 0.0336 15 7 2.8271 -4.5011 -0.4204 16 14 0.6890 -5.1449 1.2102 17 1 -0.6316 -5.4572 0.6073 18 1 1.4258 -6.4077 1.4706 19 1 0.4897 -4.4162 2.4886 20 1 -0.3633 -1.0180 -0.1410 21 1 -0.3633 0.3869 0.9520 22 1 -0.3634 0.6311 -0.8111 23 1 3.0283 1.4120 0.0004 24 1 1.6442 1.9014 -0.7813 25 1 1.5980 -1.7164 1.3001 26 1 3.1255 -0.8079 1.2010 27 1 1.9638 -0.3766 3.2434 28 1 2.8163 1.0615 -2.1181 29 1 3.6396 -0.0928 -4.1285 30 1 3.3270 -2.5193 -4.3889 31 1 2.1871 -3.8136 -2.6404 32 1 3.1700 -5.3659 -0.1457 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104497126.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:49 Heat of formation + Delta-G solvation = -29.839990 kcal Electronic energy + Delta-G solvation = -15581.260899 eV Core-core repulsion = 13120.332169 eV Total energy + Delta-G solvation = -2460.928730 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.77756 -36.18258 -34.14410 -33.65020 -30.25857 -28.79258 -27.94515 -25.45549 -25.36537 -21.26493 -20.86143 -18.57825 -17.48785 -16.38883 -15.38945 -15.11111 -14.84253 -14.36601 -13.81654 -13.17466 -12.79074 -12.68153 -12.55656 -12.04538 -11.63844 -11.49266 -11.24171 -11.12957 -10.99212 -10.57287 -10.31488 -9.92651 -9.67951 -9.47375 -9.28514 -8.87369 -7.95094 -7.50904 -7.26125 -6.72288 -4.43231 2.71335 2.81294 3.05692 3.08744 3.12786 3.93388 4.62130 5.04628 5.30652 5.52256 5.86603 6.00666 6.01024 6.19253 6.27575 6.48505 6.56821 6.69129 6.73378 6.93346 6.97470 7.06994 7.11973 7.28563 7.48867 7.65822 7.81748 7.90098 8.02714 8.12950 8.21326 8.45248 8.51569 8.82435 8.86438 10.27549 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.021617 B = 0.015095 C = 0.009937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.977975 B = 1854.520393 C = 2816.981771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.189 3.811 3 N -0.831 5.831 4 C 0.079 3.921 5 O -0.570 6.570 6 C -0.203 4.203 7 C -0.105 4.105 8 C -0.219 4.219 9 C -0.114 4.114 10 C -0.141 4.141 11 C 0.129 3.871 12 C -0.485 4.485 13 H 0.089 0.911 14 C 0.076 3.924 15 N -0.813 5.813 16 Si 0.900 3.100 17 H -0.265 1.265 18 H -0.280 1.280 19 H -0.265 1.265 20 H 0.074 0.926 21 H 0.056 0.944 22 H 0.039 0.961 23 H 0.333 0.667 24 H 0.329 0.671 25 H 0.093 0.907 26 H 0.027 0.973 27 H 0.360 0.640 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.126 2.700 1.333 3.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.097 3.903 3 N -0.360 5.360 4 C 0.002 3.998 5 O -0.373 6.373 6 C -0.206 4.206 7 C -0.124 4.124 8 C -0.238 4.238 9 C -0.132 4.132 10 C -0.160 4.160 11 C 0.126 3.874 12 C -0.516 4.516 13 H 0.107 0.893 14 C -0.139 4.139 15 N -0.440 5.440 16 Si 0.725 3.275 17 H -0.189 1.189 18 H -0.205 1.205 19 H -0.190 1.190 20 H 0.092 0.908 21 H 0.075 0.925 22 H 0.058 0.942 23 H 0.145 0.855 24 H 0.142 0.858 25 H 0.111 0.889 26 H 0.046 0.954 27 H 0.204 0.796 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.125 0.875 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.607 2.969 1.605 3.738 hybrid contribution 0.601 -1.283 -0.190 1.429 sum -1.007 1.685 1.415 2.420 Atomic orbital electron populations 1.21867 0.94408 1.02330 1.00635 1.19147 0.94453 0.85851 0.90878 1.59013 1.13089 1.13802 1.50051 1.22635 0.97525 0.96045 0.83636 1.86501 1.81784 1.53219 1.15802 1.20595 1.06977 0.95866 0.97171 1.20407 0.99875 0.97340 0.94766 1.20425 1.09429 0.94703 0.99272 1.20743 1.00124 0.94038 0.98321 1.21264 1.02424 0.99071 0.93279 1.17368 0.88970 0.89853 0.91160 1.19517 1.11755 1.01430 1.18879 0.89330 1.25761 0.94410 0.97206 0.96520 1.69744 1.16102 1.19459 1.38697 0.86490 0.80643 0.79354 0.81001 1.18923 1.20494 1.18962 0.90762 0.92514 0.94182 0.85526 0.85847 0.88931 0.95441 0.79572 0.89300 0.89312 0.89253 0.87502 0.91069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 8.53 37.16 0.32 -2.37 16 2 C 0.19 3.91 0.72 -132.76 -0.10 3.81 16 3 N -0.83 -15.41 7.94 -0.20 0.00 -15.41 16 4 C 0.08 1.65 5.56 37.15 0.21 1.86 16 5 O -0.57 -10.88 12.85 -35.23 -0.45 -11.34 16 6 C -0.20 -4.61 4.80 -103.91 -0.50 -5.11 16 7 C -0.11 -2.26 9.05 -39.66 -0.36 -2.62 16 8 C -0.22 -4.73 10.05 -39.29 -0.39 -5.13 16 9 C -0.11 -2.58 10.02 -39.66 -0.40 -2.98 16 10 C -0.14 -3.51 8.63 -38.87 -0.34 -3.84 16 11 C 0.13 3.20 5.19 -106.83 -0.55 2.65 16 12 C -0.48 -11.81 5.27 -37.74 -0.20 -12.01 16 13 H 0.09 2.09 4.65 -52.49 -0.24 1.85 16 14 C 0.08 1.83 5.25 -17.34 -0.09 1.74 16 15 N -0.81 -20.47 11.67 55.55 0.65 -19.83 16 16 Si 0.90 18.19 29.57 -169.99 -5.03 13.16 16 17 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 18 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 19 H -0.26 -5.26 7.11 56.52 0.40 -4.85 16 20 H 0.07 1.54 5.07 -51.93 -0.26 1.27 16 21 H 0.06 1.11 7.65 -51.93 -0.40 0.71 16 22 H 0.04 0.75 8.13 -51.93 -0.42 0.32 16 23 H 0.33 6.00 8.46 -39.29 -0.33 5.67 16 24 H 0.33 5.62 7.87 -39.29 -0.31 5.31 16 25 H 0.09 2.07 4.79 -51.93 -0.25 1.82 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.36 5.25 9.12 45.56 0.42 5.67 16 28 H 0.09 1.67 6.23 -52.48 -0.33 1.34 16 29 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 31 H 0.11 2.74 7.18 -52.48 -0.38 2.36 16 32 H 0.28 6.53 8.30 -40.82 -0.34 6.20 16 LS Contribution 258.11 15.07 3.89 3.89 Total: -1.00 -26.90 258.11 -6.25 -33.15 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: -2.91 Total: 20.38 kcal Atomic # 6 Polarization: -21.60 SS G_CDS: -2.40 Total: -24.00 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.65 Total: -35.23 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: -0.45 Total: -11.34 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.16 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -26.90 -6.25 -33.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104497126.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.308 kcal (2) G-P(sol) polarization free energy of solvation -26.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds