Wall clock time and date at job start Mon Mar 30 2020 03:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46897 * 109.46693 * 2 1 4 4 C 1.52993 * 109.47245 * 239.99964 * 2 1 3 5 5 O 1.42899 * 109.47331 * 66.28219 * 4 2 1 6 6 C 1.50704 * 109.46831 * 119.99643 * 2 1 3 7 7 C 1.37632 * 120.12623 * 232.06357 * 6 2 1 8 8 C 1.38614 * 120.24708 * 180.26253 * 7 6 2 9 9 C 1.38661 * 120.49941 * 359.74090 * 8 7 6 10 10 C 1.37592 * 120.24865 * 0.02562 * 9 8 7 11 11 C 1.40694 * 120.12669 * 51.81516 * 6 2 1 12 12 C 1.41397 * 120.24414 * 0.02562 * 11 6 2 13 13 H 1.07999 * 119.99660 * 48.28534 * 12 11 6 14 14 C 1.39945 * 120.00409 * 228.55785 * 12 11 6 15 15 N 1.30828 * 119.99610 * 358.80842 * 14 12 11 16 16 Si 1.86796 * 120.00433 * 178.80838 * 14 12 11 17 17 H 1.48507 * 109.46846 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47412 * 119.99798 * 16 14 12 19 19 H 1.48496 * 109.47077 * 240.00388 * 16 14 12 20 20 H 1.08995 * 109.47492 * 289.44343 * 1 2 3 21 21 H 1.09000 * 109.46849 * 49.45208 * 1 2 3 22 22 H 1.09004 * 109.46822 * 169.44858 * 1 2 3 23 23 H 1.00906 * 111.00010 * 179.97438 * 3 2 1 24 24 H 1.00901 * 111.00647 * 303.95426 * 3 2 1 25 25 H 1.09000 * 109.47292 * 186.27848 * 4 2 1 26 26 H 1.08996 * 109.47613 * 306.27977 * 4 2 1 27 27 H 0.96704 * 114.00704 * 179.97438 * 5 4 2 28 28 H 1.08004 * 119.88289 * 359.97438 * 7 6 2 29 29 H 1.08000 * 119.75400 * 179.76470 * 8 7 6 30 30 H 1.07997 * 119.87162 * 180.02562 * 9 8 7 31 31 H 1.07999 * 120.12763 * 180.02562 * 10 9 8 32 32 H 0.96995 * 119.99637 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 1.6880 0.0321 -2.4113 6 6 2.0323 -0.7104 1.2306 7 6 2.9526 -0.1009 2.0527 8 6 3.4203 -0.7542 3.1823 9 6 2.9642 -2.0244 3.5001 10 6 2.0407 -2.6509 2.6952 11 6 1.5584 -1.9969 1.5461 12 6 0.6095 -2.6310 0.7113 13 1 0.7638 -2.6593 -0.3572 14 6 -0.5326 -3.2167 1.2691 15 7 -0.7107 -3.1981 2.5651 16 14 -1.8027 -4.0251 0.1633 17 1 -1.3698 -3.9119 -1.2527 18 1 -1.9357 -5.4585 0.5277 19 1 -3.1124 -3.3468 0.3357 20 1 -0.3634 0.3421 0.9690 21 1 -0.3633 0.6681 -0.7809 22 1 -0.3633 -1.0103 -0.1882 23 1 3.0283 1.4120 0.0004 24 1 1.6441 1.9014 -0.7813 25 1 3.1243 -0.8196 -1.1948 26 1 1.5879 -1.7113 -1.3072 27 1 1.9807 -0.3667 -3.2423 28 1 3.3152 0.8882 1.8145 29 1 4.1453 -0.2700 3.8198 30 1 3.3351 -2.5239 4.3829 31 1 1.6864 -3.6401 2.9448 32 1 -1.5020 -3.6044 2.9517 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104497131.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:53 Heat of formation + Delta-G solvation = -30.050046 kcal Electronic energy + Delta-G solvation = -15553.559305 eV Core-core repulsion = 13092.621466 eV Total energy + Delta-G solvation = -2460.937839 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.72442 -36.50691 -34.13850 -33.53189 -30.12927 -28.93040 -27.70420 -25.60037 -25.23694 -21.32342 -20.80907 -18.53510 -17.55044 -16.70292 -15.52650 -14.94117 -14.59198 -14.23876 -13.91760 -13.58138 -13.12816 -12.56779 -12.15774 -11.96906 -11.57335 -11.37952 -11.21125 -10.93413 -10.82411 -10.67756 -10.33299 -10.20150 -9.53271 -9.45701 -9.31491 -8.92769 -8.03164 -7.38336 -7.06937 -6.57509 -4.34257 2.78113 2.93121 3.11933 3.14814 3.20085 4.03148 4.67491 4.80223 5.33740 5.48204 5.74555 5.87016 6.06903 6.20558 6.28525 6.44598 6.47805 6.62413 6.94339 6.98532 7.14426 7.19173 7.37856 7.45190 7.59826 7.68407 7.93824 7.96323 7.99676 8.10165 8.19896 8.33329 8.59562 8.92858 8.98297 10.43972 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.021239 B = 0.015011 C = 0.009792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.020383 B = 1864.878240 C = 2858.879329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.192 3.808 3 N -0.835 5.835 4 C 0.041 3.959 5 O -0.578 6.578 6 C -0.158 4.158 7 C -0.089 4.089 8 C -0.218 4.218 9 C -0.117 4.117 10 C -0.138 4.138 11 C 0.126 3.874 12 C -0.487 4.487 13 H 0.080 0.920 14 C 0.078 3.922 15 N -0.821 5.821 16 Si 0.898 3.102 17 H -0.263 1.263 18 H -0.276 1.276 19 H -0.275 1.275 20 H 0.049 0.951 21 H 0.032 0.968 22 H 0.091 0.909 23 H 0.329 0.671 24 H 0.337 0.663 25 H 0.032 0.968 26 H 0.070 0.930 27 H 0.369 0.631 28 H 0.101 0.899 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.102 1.981 -5.494 6.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.100 3.900 3 N -0.364 5.364 4 C -0.038 4.038 5 O -0.383 6.383 6 C -0.160 4.160 7 C -0.108 4.108 8 C -0.237 4.237 9 C -0.135 4.135 10 C -0.157 4.157 11 C 0.124 3.876 12 C -0.519 4.519 13 H 0.098 0.902 14 C -0.135 4.135 15 N -0.450 5.450 16 Si 0.724 3.276 17 H -0.187 1.187 18 H -0.201 1.201 19 H -0.200 1.200 20 H 0.069 0.931 21 H 0.051 0.949 22 H 0.109 0.891 23 H 0.141 0.859 24 H 0.149 0.851 25 H 0.051 0.949 26 H 0.088 0.912 27 H 0.214 0.786 28 H 0.119 0.881 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.125 0.875 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.286 2.375 -4.149 5.299 hybrid contribution 0.026 -1.052 -1.556 1.879 sum 2.312 1.323 -5.705 6.296 Atomic orbital electron populations 1.21837 0.93247 1.03440 1.00179 1.19148 0.95638 0.85679 0.89560 1.59042 1.12696 1.13998 1.50622 1.23422 0.97669 0.96631 0.86074 1.86384 1.82724 1.52707 1.16477 1.19692 1.03257 0.94952 0.98116 1.20484 0.97196 0.98068 0.95008 1.20536 1.05893 0.97095 1.00161 1.20771 0.98802 0.95420 0.98513 1.21278 0.97098 0.99729 0.97618 1.17370 0.89333 0.89090 0.91832 1.19349 1.04474 1.33601 0.94451 0.90197 1.25642 0.98876 0.93971 0.95051 1.69742 1.27069 1.37018 1.11133 0.86422 0.80820 0.79274 0.81115 1.18721 1.20145 1.20022 0.93140 0.94882 0.89087 0.85873 0.85063 0.94947 0.91246 0.78550 0.88089 0.89282 0.89308 0.87528 0.91430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.82 7.94 37.16 0.29 -2.53 16 2 C 0.19 3.96 0.76 -132.75 -0.10 3.86 16 3 N -0.83 -15.26 7.95 -0.19 0.00 -15.26 16 4 C 0.04 0.76 5.85 37.15 0.22 0.98 16 5 O -0.58 -9.31 12.71 -35.23 -0.45 -9.76 16 6 C -0.16 -3.69 4.79 -103.91 -0.50 -4.19 16 7 C -0.09 -1.98 9.19 -39.66 -0.36 -2.35 16 8 C -0.22 -4.80 10.05 -39.29 -0.39 -5.20 16 9 C -0.12 -2.68 10.02 -39.66 -0.40 -3.08 16 10 C -0.14 -3.48 8.64 -38.88 -0.34 -3.82 16 11 C 0.13 3.18 5.16 -106.83 -0.55 2.63 16 12 C -0.49 -12.12 5.24 -37.74 -0.20 -12.32 16 13 H 0.08 1.92 4.78 -52.49 -0.25 1.66 16 14 C 0.08 1.95 5.28 -17.34 -0.09 1.86 16 15 N -0.82 -21.52 11.78 55.55 0.65 -20.87 16 16 Si 0.90 18.89 29.56 -169.99 -5.02 13.87 16 17 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 18 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 19 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 20 H 0.05 1.18 8.10 -51.93 -0.42 0.76 16 21 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 22 H 0.09 2.09 5.03 -51.93 -0.26 1.82 16 23 H 0.33 5.56 7.69 -39.29 -0.30 5.26 16 24 H 0.34 5.76 8.32 -39.29 -0.33 5.44 16 25 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 1.38 5.10 -51.93 -0.26 1.11 16 27 H 0.37 4.20 9.12 45.56 0.42 4.62 16 28 H 0.10 2.03 6.31 -52.48 -0.33 1.70 16 29 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 30 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 31 H 0.11 2.78 7.41 -52.49 -0.39 2.39 16 32 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 LS Contribution 258.73 15.07 3.90 3.90 Total: -1.00 -27.52 258.73 -6.29 -33.81 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: -2.95 Total: 18.47 kcal Atomic # 6 Polarization: -21.74 SS G_CDS: -2.42 Total: -24.16 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.65 Total: -36.13 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -0.45 Total: -9.76 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.02 Total: 13.87 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -27.52 -6.29 -33.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104497131.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.762 kcal (2) G-P(sol) polarization free energy of solvation -27.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds