Wall clock time and date at job start Mon Mar 30 2020 03:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46897 * 109.46693 * 2 1 4 4 C 1.52993 * 109.47245 * 239.99964 * 2 1 3 5 5 O 1.42899 * 109.47331 * 66.28219 * 4 2 1 6 6 C 1.50704 * 109.46831 * 119.99643 * 2 1 3 7 7 C 1.37632 * 120.12623 * 232.06357 * 6 2 1 8 8 C 1.38614 * 120.24708 * 180.26253 * 7 6 2 9 9 C 1.38661 * 120.49941 * 359.74090 * 8 7 6 10 10 C 1.37592 * 120.24865 * 0.02562 * 9 8 7 11 11 C 1.40694 * 120.12669 * 51.81516 * 6 2 1 12 12 C 1.41397 * 120.24414 * 0.02562 * 11 6 2 13 13 H 1.07999 * 119.99660 * 48.28534 * 12 11 6 14 14 C 1.39945 * 120.00409 * 228.55785 * 12 11 6 15 15 N 1.30828 * 119.99610 * 358.80842 * 14 12 11 16 16 Si 1.86796 * 120.00433 * 178.80838 * 14 12 11 17 17 H 1.48507 * 109.46846 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47412 * 119.99798 * 16 14 12 19 19 H 1.48496 * 109.47077 * 240.00388 * 16 14 12 20 20 H 1.08995 * 109.47492 * 289.44343 * 1 2 3 21 21 H 1.09000 * 109.46849 * 49.45208 * 1 2 3 22 22 H 1.09004 * 109.46822 * 169.44858 * 1 2 3 23 23 H 1.00906 * 111.00010 * 179.97438 * 3 2 1 24 24 H 1.00901 * 111.00647 * 303.95426 * 3 2 1 25 25 H 1.09000 * 109.47292 * 186.27848 * 4 2 1 26 26 H 1.08996 * 109.47613 * 306.27977 * 4 2 1 27 27 H 0.96704 * 114.00704 * 179.97438 * 5 4 2 28 28 H 1.08004 * 119.88289 * 359.97438 * 7 6 2 29 29 H 1.08000 * 119.75400 * 179.76470 * 8 7 6 30 30 H 1.07997 * 119.87162 * 180.02562 * 9 8 7 31 31 H 1.07999 * 120.12763 * 180.02562 * 10 9 8 32 32 H 0.96995 * 119.99637 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 1.6880 0.0321 -2.4113 6 6 2.0323 -0.7104 1.2306 7 6 2.9526 -0.1009 2.0527 8 6 3.4203 -0.7542 3.1823 9 6 2.9642 -2.0244 3.5001 10 6 2.0407 -2.6509 2.6952 11 6 1.5584 -1.9969 1.5461 12 6 0.6095 -2.6310 0.7113 13 1 0.7638 -2.6593 -0.3572 14 6 -0.5326 -3.2167 1.2691 15 7 -0.7107 -3.1981 2.5651 16 14 -1.8027 -4.0251 0.1633 17 1 -1.3698 -3.9119 -1.2527 18 1 -1.9357 -5.4585 0.5277 19 1 -3.1124 -3.3468 0.3357 20 1 -0.3634 0.3421 0.9690 21 1 -0.3633 0.6681 -0.7809 22 1 -0.3633 -1.0103 -0.1882 23 1 3.0283 1.4120 0.0004 24 1 1.6441 1.9014 -0.7813 25 1 3.1243 -0.8196 -1.1948 26 1 1.5879 -1.7113 -1.3072 27 1 1.9807 -0.3667 -3.2423 28 1 3.3152 0.8882 1.8145 29 1 4.1453 -0.2700 3.8198 30 1 3.3351 -2.5239 4.3829 31 1 1.6864 -3.6401 2.9448 32 1 -1.5020 -3.6044 2.9517 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104497131.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:52 Heat of formation + Delta-G solvation = -49.801130 kcal Electronic energy + Delta-G solvation = -15554.415776 eV Core-core repulsion = 13092.621466 eV Total energy + Delta-G solvation = -2461.794310 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.40670 -38.03807 -35.63790 -35.37301 -31.90101 -30.68177 -29.37894 -27.27588 -26.95293 -23.05117 -22.64123 -20.20396 -19.29073 -18.16643 -17.24605 -16.55746 -16.22617 -15.83736 -15.44968 -15.25631 -14.86830 -14.31941 -13.88669 -13.59681 -13.22335 -13.10834 -12.95027 -12.63045 -12.54682 -12.32555 -12.02772 -11.90087 -11.32952 -11.19321 -10.85557 -10.69349 -9.51812 -9.18717 -8.89679 -8.42988 -6.25065 0.99436 1.11841 1.40048 1.47607 1.52164 2.27851 2.91239 3.35351 3.68589 3.84022 4.19847 4.30968 4.44929 4.51907 4.69955 4.74307 4.81640 4.93706 5.23620 5.26655 5.31247 5.38062 5.54084 5.69533 5.78930 5.97985 6.13803 6.22256 6.39103 6.55975 6.70721 6.82265 6.90591 7.08361 7.10289 8.60355 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.021239 B = 0.015011 C = 0.009792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.020383 B = 1864.878240 C = 2858.879329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.191 3.809 3 N -0.833 5.833 4 C 0.055 3.945 5 O -0.580 6.580 6 C -0.165 4.165 7 C -0.097 4.097 8 C -0.215 4.215 9 C -0.124 4.124 10 C -0.164 4.164 11 C 0.097 3.903 12 C -0.495 4.495 13 H 0.085 0.915 14 C 0.036 3.964 15 N -0.862 5.862 16 Si 0.959 3.041 17 H -0.253 1.253 18 H -0.273 1.273 19 H -0.275 1.275 20 H 0.023 0.977 21 H 0.049 0.951 22 H 0.076 0.924 23 H 0.340 0.660 24 H 0.346 0.654 25 H 0.039 0.961 26 H 0.053 0.947 27 H 0.392 0.608 28 H 0.125 0.875 29 H 0.121 0.879 30 H 0.110 0.890 31 H 0.085 0.915 32 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.799 2.998 -6.680 8.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.098 3.902 3 N -0.363 5.363 4 C -0.025 4.025 5 O -0.387 6.387 6 C -0.167 4.167 7 C -0.115 4.115 8 C -0.234 4.234 9 C -0.142 4.142 10 C -0.183 4.183 11 C 0.095 3.905 12 C -0.527 4.527 13 H 0.103 0.897 14 C -0.173 4.173 15 N -0.492 5.492 16 Si 0.782 3.218 17 H -0.177 1.177 18 H -0.198 1.198 19 H -0.201 1.201 20 H 0.042 0.958 21 H 0.067 0.933 22 H 0.095 0.905 23 H 0.153 0.847 24 H 0.160 0.840 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.242 0.758 28 H 0.143 0.857 29 H 0.139 0.861 30 H 0.128 0.872 31 H 0.103 0.897 32 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.007 3.397 -5.366 7.027 hybrid contribution -0.098 -1.283 -1.176 1.743 sum 2.909 2.115 -6.542 7.466 Atomic orbital electron populations 1.21717 0.94409 1.02722 0.99072 1.19018 0.94681 0.86876 0.89588 1.58925 1.13532 1.12602 1.51271 1.23038 0.97689 0.95510 0.86238 1.86324 1.82876 1.52525 1.16993 1.20015 1.02933 0.94464 0.99239 1.20836 0.96813 0.99030 0.94800 1.20935 1.05693 0.96512 1.00255 1.21037 0.98200 0.96111 0.98896 1.21271 0.98686 0.99436 0.98949 1.17680 0.90122 0.90335 0.92371 1.19545 1.04673 1.33820 0.94710 0.89706 1.26384 1.00575 0.94307 0.96081 1.69841 1.27904 1.38637 1.12798 0.85489 0.78256 0.78244 0.79812 1.17664 1.19824 1.20060 0.95818 0.93252 0.90549 0.84708 0.84011 0.94231 0.92889 0.75846 0.85711 0.86141 0.87210 0.89719 0.91357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.22 7.94 71.98 0.57 -4.64 16 2 C 0.19 7.58 0.76 2.78 0.00 7.58 16 3 N -0.83 -28.29 7.95 -154.52 -1.23 -29.51 16 4 C 0.05 1.92 5.85 71.98 0.42 2.34 16 5 O -0.58 -16.90 12.71 -148.98 -1.89 -18.79 16 6 C -0.16 -7.54 4.79 -19.41 -0.09 -7.64 16 7 C -0.10 -4.10 9.19 22.22 0.20 -3.90 16 8 C -0.22 -9.03 10.05 22.46 0.23 -8.80 16 9 C -0.12 -5.64 10.02 22.22 0.22 -5.42 16 10 C -0.16 -8.45 8.64 22.73 0.20 -8.26 16 11 C 0.10 4.95 5.16 -21.29 -0.11 4.84 16 12 C -0.50 -25.01 5.24 23.46 0.12 -24.89 16 13 H 0.09 4.09 4.78 -2.91 -0.01 4.07 16 14 C 0.04 1.83 5.28 85.26 0.45 2.28 16 15 N -0.86 -46.55 11.78 21.83 0.26 -46.29 16 16 Si 0.96 39.08 29.56 68.60 2.03 41.11 16 17 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 18 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 19 H -0.28 -11.13 7.11 99.48 0.71 -10.43 16 20 H 0.02 1.09 8.10 -2.39 -0.02 1.07 16 21 H 0.05 1.89 8.07 -2.39 -0.02 1.87 16 22 H 0.08 3.49 5.03 -2.38 -0.01 3.48 16 23 H 0.34 10.39 7.69 -89.69 -0.69 9.70 16 24 H 0.35 10.81 8.32 -89.69 -0.75 10.07 16 25 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.05 2.05 5.10 -2.39 -0.01 2.03 16 27 H 0.39 7.60 9.12 -74.05 -0.68 6.93 16 28 H 0.13 4.63 6.31 -2.91 -0.02 4.62 16 29 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 30 H 0.11 4.39 8.06 -2.91 -0.02 4.36 16 31 H 0.08 4.62 7.41 -2.91 -0.02 4.60 16 32 H 0.28 13.91 8.30 -92.71 -0.77 13.14 16 Total: -1.00 -58.62 258.73 0.43 -58.19 By element: Atomic # 1 Polarization: 42.74 SS G_CDS: -0.94 Total: 41.80 kcal Atomic # 6 Polarization: -48.71 SS G_CDS: 2.21 Total: -46.50 kcal Atomic # 7 Polarization: -74.83 SS G_CDS: -0.97 Total: -75.80 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -1.89 Total: -18.79 kcal Atomic # 14 Polarization: 39.08 SS G_CDS: 2.03 Total: 41.11 kcal Total: -58.62 0.43 -58.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104497131.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.388 kcal (2) G-P(sol) polarization free energy of solvation -58.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds