Wall clock time and date at job start Mon Mar 30 2020 02:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50705 * 109.46741 * 2 1 4 4 C 1.38755 * 120.02158 * 270.01983 * 3 2 1 5 5 O 1.35900 * 120.05917 * 359.95514 * 4 3 2 6 6 C 1.38710 * 119.88523 * 179.97438 * 4 3 2 7 7 C 1.38164 * 119.94587 * 359.97438 * 6 4 3 8 8 C 1.38244 * 120.05469 * 359.74162 * 7 6 4 9 9 C 1.38120 * 120.03155 * 89.99854 * 3 2 1 10 10 C 1.50694 * 119.97243 * 359.97438 * 9 3 2 11 11 H 1.09003 * 109.47002 * 40.00107 * 10 9 3 12 12 N 1.46897 * 109.47522 * 159.99996 * 10 9 3 13 13 C 1.50700 * 109.47550 * 280.00165 * 10 9 3 14 14 H 1.08002 * 119.99365 * 335.25350 * 13 10 9 15 15 C 1.37876 * 120.00609 * 155.25155 * 13 10 9 16 16 N 1.31521 * 119.99480 * 6.87289 * 15 13 10 17 17 Si 1.86797 * 120.00261 * 186.87517 * 15 13 10 18 18 H 1.48502 * 109.47098 * 180.02562 * 17 15 13 19 19 H 1.48505 * 109.46753 * 299.99737 * 17 15 13 20 20 H 1.48501 * 109.47506 * 60.00060 * 17 15 13 21 21 H 1.09003 * 109.47388 * 299.99943 * 1 2 3 22 22 H 1.09000 * 109.47475 * 60.01064 * 1 2 3 23 23 H 1.09006 * 109.46994 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47588 * 239.99415 * 2 1 3 25 25 H 1.09006 * 109.47010 * 119.99456 * 2 1 3 26 26 H 0.96699 * 113.99810 * 90.00439 * 5 4 3 27 27 H 1.08003 * 120.03013 * 180.02562 * 6 4 3 28 28 H 1.08000 * 119.97676 * 180.02562 * 7 6 4 29 29 H 1.08002 * 119.94787 * 180.25172 * 8 7 6 30 30 H 1.00905 * 110.99840 * 66.71133 * 12 10 9 31 31 H 1.00899 * 111.00679 * 190.66601 * 12 10 9 32 32 H 0.96998 * 120.00218 * 355.33496 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.2632 2.0756 -1.2014 5 8 2.0378 1.4363 -2.3793 6 6 2.7250 3.3835 -1.1981 7 6 2.9533 4.0313 0.0007 8 6 2.7168 3.3788 1.1963 9 6 2.2626 2.0726 1.1958 10 6 2.0109 1.3625 2.5009 11 1 2.3456 0.3282 2.4221 12 7 2.7515 2.0363 3.5758 13 6 0.5367 1.3911 2.8123 14 1 -0.0876 2.1692 2.3984 15 6 -0.0151 0.4241 3.6256 16 7 0.7625 -0.4421 4.2379 17 14 -1.8669 0.3441 3.8576 18 1 -2.2031 -0.7760 4.7727 19 1 -2.3480 1.6217 4.4420 20 1 -2.5215 0.1235 2.5430 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.1395 1.5452 -2.7202 27 1 2.9052 3.8955 -2.1319 28 1 3.3124 5.0499 0.0039 29 1 2.8919 3.8882 2.1324 30 1 2.3852 2.9616 3.7423 31 1 2.7421 1.4860 4.4215 32 1 1.7169 -0.4439 4.0650 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104501587.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:58 Heat of formation + Delta-G solvation = -55.407137 kcal Electronic energy + Delta-G solvation = -15429.547756 eV Core-core repulsion = 12967.510351 eV Total energy + Delta-G solvation = -2462.037405 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.98674 -38.15591 -36.36820 -34.73492 -33.38925 -30.40961 -29.79968 -27.59813 -24.81176 -24.65985 -22.26754 -21.37717 -19.18634 -18.49769 -17.70524 -16.93167 -16.10581 -15.77550 -15.69035 -15.07612 -14.60815 -14.56740 -14.18946 -14.02651 -13.65069 -13.11097 -12.82194 -12.67963 -12.43848 -12.20620 -12.05543 -11.94106 -11.57410 -11.40219 -10.93133 -10.68406 -9.57304 -9.34207 -9.19635 -8.51762 -6.33188 0.45471 0.57131 1.51209 1.55524 1.74680 2.51522 2.85290 3.16642 3.40456 3.94918 4.03143 4.14750 4.25673 4.44872 4.62943 4.65546 4.68711 4.77556 4.86860 5.05980 5.15305 5.27322 5.33507 5.56247 5.61196 5.67168 5.83626 5.98807 6.08688 6.12366 6.56315 6.59726 6.84423 6.91096 7.42072 8.75533 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029939 B = 0.011002 C = 0.009229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.008437 B = 2544.298623 C = 3033.039196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.064 4.064 3 C -0.123 4.123 4 C 0.096 3.904 5 O -0.502 6.502 6 C -0.163 4.163 7 C -0.110 4.110 8 C -0.135 4.135 9 C -0.042 4.042 10 C 0.227 3.773 11 H 0.023 0.977 12 N -0.845 5.845 13 C -0.601 4.601 14 H 0.038 0.962 15 C -0.009 4.009 16 N -0.930 5.930 17 Si 1.095 2.905 18 H -0.288 1.288 19 H -0.276 1.276 20 H -0.268 1.268 21 H 0.062 0.938 22 H 0.060 0.940 23 H 0.051 0.949 24 H 0.071 0.929 25 H 0.040 0.960 26 H 0.402 0.598 27 H 0.148 0.852 28 H 0.151 0.849 29 H 0.124 0.876 30 H 0.329 0.671 31 H 0.325 0.675 32 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.341 6.147 -9.586 11.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.101 4.101 3 C -0.124 4.124 4 C 0.051 3.949 5 O -0.314 6.314 6 C -0.181 4.181 7 C -0.128 4.128 8 C -0.153 4.153 9 C -0.043 4.043 10 C 0.118 3.882 11 H 0.040 0.960 12 N -0.372 5.372 13 C -0.640 4.640 14 H 0.056 0.944 15 C -0.210 4.210 16 N -0.567 5.567 17 Si 0.919 3.081 18 H -0.214 1.214 19 H -0.201 1.201 20 H -0.193 1.193 21 H 0.081 0.919 22 H 0.079 0.921 23 H 0.070 0.930 24 H 0.090 0.910 25 H 0.058 0.942 26 H 0.259 0.741 27 H 0.166 0.834 28 H 0.169 0.831 29 H 0.142 0.858 30 H 0.141 0.859 31 H 0.136 0.864 32 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.303 5.105 -9.220 10.543 hybrid contribution -0.079 0.602 -0.013 0.607 sum -0.382 5.707 -9.233 10.861 Atomic orbital electron populations 1.21779 0.94349 1.01435 1.02686 1.20164 0.96918 0.92427 1.00615 1.20131 1.02095 0.97677 0.92539 1.18303 1.00979 0.91210 0.84376 1.84705 1.37107 1.74379 1.35178 1.21490 1.03531 0.93568 0.99522 1.21254 0.99576 1.00707 0.91227 1.21132 1.00757 0.94434 0.98965 1.20018 0.94834 0.94806 0.94662 1.17990 0.91489 0.92094 0.86656 0.95970 1.59517 1.59856 1.06769 1.11052 1.22424 0.94437 1.13790 1.33392 0.94362 1.26852 1.09315 0.92409 0.92417 1.70947 1.06608 1.39153 1.40013 0.83213 0.71048 0.76591 0.77259 1.21403 1.20116 1.19325 0.91912 0.92130 0.93012 0.91038 0.94171 0.74054 0.83383 0.83144 0.85825 0.85939 0.86419 0.92970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.53 9.83 71.98 0.71 -4.82 16 2 C -0.06 -2.57 5.31 29.85 0.16 -2.41 16 3 C -0.12 -4.98 5.14 -19.77 -0.10 -5.08 16 4 C 0.10 3.27 6.68 22.51 0.15 3.42 16 5 O -0.50 -14.48 12.55 -92.42 -1.16 -15.64 16 6 C -0.16 -4.89 9.99 22.36 0.22 -4.67 16 7 C -0.11 -3.38 10.04 22.25 0.22 -3.16 16 8 C -0.13 -5.09 9.27 22.28 0.21 -4.88 16 9 C -0.04 -1.84 5.06 -19.88 -0.10 -1.94 16 10 C 0.23 11.03 2.01 43.42 0.09 11.11 16 11 H 0.02 1.23 5.28 -2.39 -0.01 1.22 16 12 N -0.85 -37.93 8.53 -174.97 -1.49 -39.43 16 13 C -0.60 -30.92 5.84 25.60 0.15 -30.77 16 14 H 0.04 2.03 7.80 -2.91 -0.02 2.01 16 15 C -0.01 -0.48 5.37 84.65 0.46 -0.03 16 16 N -0.93 -52.96 13.63 21.45 0.29 -52.67 16 17 Si 1.10 47.82 29.91 68.60 2.05 49.88 16 18 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 19 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 20 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 21 H 0.06 2.79 5.38 -2.39 -0.01 2.78 16 22 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 23 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 24 H 0.07 2.60 7.53 -2.39 -0.02 2.58 16 25 H 0.04 1.85 6.12 -2.38 -0.01 1.84 16 26 H 0.40 7.85 9.06 -74.06 -0.67 7.18 16 27 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 28 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 29 H 0.12 4.51 6.42 -2.91 -0.02 4.50 16 30 H 0.33 13.92 7.61 -89.69 -0.68 13.23 16 31 H 0.33 15.22 8.48 -89.69 -0.76 14.46 16 32 H 0.26 14.99 6.24 -92.71 -0.58 14.41 16 Total: -1.00 -60.36 262.81 1.09 -59.26 By element: Atomic # 1 Polarization: 42.58 SS G_CDS: -0.76 Total: 41.82 kcal Atomic # 6 Polarization: -45.39 SS G_CDS: 2.16 Total: -43.23 kcal Atomic # 7 Polarization: -90.89 SS G_CDS: -1.20 Total: -92.09 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -1.16 Total: -15.64 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.05 Total: 49.88 kcal Total: -60.36 1.09 -59.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104501587.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.857 kcal (2) G-P(sol) polarization free energy of solvation -60.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds